RNA–Protein interactions for RNA: ENST00000537641.5

CPSF7-218, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 5

Gene CPSF7, Length 1,728 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-218ENST00000537641 NISCHQ9Y2I1 1504 aa25.24■■□□□ 1.63
CPSF7-218ENST00000537641 CCDC180Q9P1Z9 1646 aa21.8■■□□□ 1.08
CPSF7-218ENST00000537641 ZCCHC6Q5VYS8 1495 aaKnown RBP21.32■■□□□ 1
CPSF7-218ENST00000537641 SHROOM4Q9ULL8 1493 aa20.98■□□□□ 0.95
CPSF7-218ENST00000537641 DCAF1Q9Y4B6 1507 aa20.87■□□□□ 0.93
CPSF7-218ENST00000537641 DCAF8L2P0C7V8 631 aa20.64■□□□□ 0.89
CPSF7-218ENST00000537641 SUPT5HO00267 1087 aaKnown RBP20.56■□□□□ 0.88
CPSF7-218ENST00000537641 MYO15BQ96JP2 1530 aa20.41■□□□□ 0.86
CPSF7-218ENST00000537641 CHIC1Q5VXU3 224 aa20.27■□□□□ 0.83
CPSF7-218ENST00000537641 HRCP23327 699 aa20.19■□□□□ 0.82
CPSF7-218ENST00000537641 NACADO15069 1562 aa20.14■□□□□ 0.81
CPSF7-218ENST00000537641 SCRIBQ14160 1630 aa20.12■□□□□ 0.81
CPSF7-218ENST00000537641 ABCC9O60706 1549 aa20.1■□□□□ 0.81
CPSF7-218ENST00000537641 RB1CC1Q8TDY2 1594 aa19.85■□□□□ 0.77
CPSF7-218ENST00000537641 PCGF6Q9BYE7 350 aa19.83■□□□□ 0.77
CPSF7-218ENST00000537641 RSF1Q96T23 1441 aaPredicted RBP19.78■□□□□ 0.76
CPSF7-218ENST00000537641 CECR2Q9BXF3 1484 aa19.57■□□□□ 0.72
CPSF7-218ENST00000537641 UNC13AQ9UPW8 1703 aa19.56■□□□□ 0.72
CPSF7-218ENST00000537641 TRIM26Q12899 539 aaPredicted RBP19.54■□□□□ 0.72
CPSF7-218ENST00000537641 LOC105371045A0A1W2PR82 267 aa19.54■□□□□ 0.72
CPSF7-218ENST00000537641 MROH2BQ7Z745 1585 aa19.53■□□□□ 0.72
CPSF7-218ENST00000537641 PPARGC1BQ86YN6 1023 aaKnown RBP19.52■□□□□ 0.72
CPSF7-218ENST00000537641 BAZ1AQ9NRL2 1556 aaPredicted RBP19.46■□□□□ 0.71
CPSF7-218ENST00000537641 WIZO95785 1651 aa19.44■□□□□ 0.7
CPSF7-218ENST00000537641 ZEB1P37275 1124 aaPredicted RBP19.36■□□□□ 0.69
CPSF7-218ENST00000537641 SMARCA4P51532 1647 aa19.32■□□□□ 0.68
CPSF7-218ENST00000537641 BICRAQ9NZM4 1560 aa19.25■□□□□ 0.67
CPSF7-218ENST00000537641 TRIM41Q8WV44 630 aa19.23■□□□□ 0.67
CPSF7-218ENST00000537641 TOP2AP11388 1531 aaKnown RBP19.22■□□□□ 0.67
CPSF7-218ENST00000537641 EIF4G1Q04637 1599 aaKnown RBP19.16■□□□□ 0.66
CPSF7-218ENST00000537641 SMARCA2P51531 1590 aa19.07■□□□□ 0.64
CPSF7-218ENST00000537641 PEG3Q9GZU2 1588 aa19.05■□□□□ 0.64
CPSF7-218ENST00000537641 PABPN1Q86U42 306 aaKnown RBP eCLIP19.03■□□□□ 0.64
CPSF7-218ENST00000537641 CCDC88BA6NC98 1476 aa19.02■□□□□ 0.64
CPSF7-218ENST00000537641 FAM9AQ8IZU1 332 aaPredicted RBP18.94■□□□□ 0.62
CPSF7-218ENST00000537641 PELP1Q8IZL8 1130 aaKnown RBP18.92■□□□□ 0.62
CPSF7-218ENST00000537641 ATAD2BQ9ULI0 1458 aa18.83■□□□□ 0.6
CPSF7-218ENST00000537641 ABCC8Q09428 1581 aa18.82■□□□□ 0.6
CPSF7-218ENST00000537641 BAZ1BQ9UIG0 1483 aaKnown RBP18.76■□□□□ 0.59
CPSF7-218ENST00000537641 WRNQ14191 1432 aaPredicted RBP eCLIP18.75■□□□□ 0.59
CPSF7-218ENST00000537641 SCAF1Q9H7N4 1312 aaKnown RBP18.71■□□□□ 0.59
CPSF7-218ENST00000537641 EHMT2Q96KQ7 1210 aa18.66■□□□□ 0.58
CPSF7-218ENST00000537641 EEA1Q15075 1411 aa18.63■□□□□ 0.57
CPSF7-218ENST00000537641 HMGXB3Q12766 1538 aa18.61■□□□□ 0.57
CPSF7-218ENST00000537641 CCER1Q8TC90 406 aaPredicted RBP18.59■□□□□ 0.57
CPSF7-218ENST00000537641 CEP162Q5TB80 1403 aa18.58■□□□□ 0.56
CPSF7-218ENST00000537641 TNIKQ9UKE5 1360 aa18.57■□□□□ 0.56
CPSF7-218ENST00000537641 NCAPD3P42695 1498 aa18.56■□□□□ 0.56
CPSF7-218ENST00000537641 SOGA1O94964 1423 aa18.55■□□□□ 0.56
CPSF7-218ENST00000537641 SYNJ1O43426 1573 aa18.55■□□□□ 0.56
CPSF7-218ENST00000537641 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.54■□□□□ 0.56
CPSF7-218ENST00000537641 ACIN1Q9UKV3 1341 aaKnown RBP18.51■□□□□ 0.55
CPSF7-218ENST00000537641 RUSC2Q8N2Y8 1516 aa18.46■□□□□ 0.55
CPSF7-218ENST00000537641 CSRNP3Q8WYN3 585 aa18.45■□□□□ 0.54
CPSF7-218ENST00000537641 GOLGA3Q08378 1498 aa18.45■□□□□ 0.54
CPSF7-218ENST00000537641 TOP2BQ02880 1626 aa18.43■□□□□ 0.54
CPSF7-218ENST00000537641 BIVM-ERCC5R4GMW8 1640 aa18.41■□□□□ 0.54
CPSF7-218ENST00000537641 CENPBP07199 599 aaPredicted RBP18.41■□□□□ 0.54
CPSF7-218ENST00000537641 DIEXFQ68CQ4 756 aaKnown RBP18.41■□□□□ 0.54
CPSF7-218ENST00000537641 KIF21BO75037 1637 aa18.4■□□□□ 0.54
CPSF7-218ENST00000537641 NEUROD1Q13562 356 aa18.37■□□□□ 0.53
CPSF7-218ENST00000537641 PRDM2Q13029 1718 aa18.36■□□□□ 0.53
CPSF7-218ENST00000537641 CEP164Q9UPV0 1460 aa18.35■□□□□ 0.53
CPSF7-218ENST00000537641 CFTRP13569 1480 aa18.31■□□□□ 0.52
CPSF7-218ENST00000537641 UBTFP17480 764 aaKnown RBP18.27■□□□□ 0.52
CPSF7-218ENST00000537641 ZNF316A6NFI3 1004 aaPredicted RBP18.26■□□□□ 0.51
CPSF7-218ENST00000537641 CUX1P39880 1505 aa18.23■□□□□ 0.51
CPSF7-218ENST00000537641 CC2D2AQ9P2K1 1620 aa18.22■□□□□ 0.51
CPSF7-218ENST00000537641 GTF3C3Q9Y5Q9 886 aa18.21■□□□□ 0.51
CPSF7-218ENST00000537641 VPS8Q8N3P4 1428 aa18.19■□□□□ 0.5
CPSF7-218ENST00000537641 TTBK1Q5TCY1 1321 aaPredicted RBP18.19■□□□□ 0.5
CPSF7-218ENST00000537641 CLIP1P30622 1438 aa18.17■□□□□ 0.5
CPSF7-218ENST00000537641 RAPGEF2Q9Y4G8 1499 aa18.16■□□□□ 0.5
CPSF7-218ENST00000537641 ERICH3Q5RHP9 1530 aa18.16■□□□□ 0.5
CPSF7-218ENST00000537641 MYT1Q01538 1121 aa18.12■□□□□ 0.49
CPSF7-218ENST00000537641 CADPSQ9ULU8 1353 aa18.11■□□□□ 0.49
CPSF7-218ENST00000537641 PRXQ9BXM0 1461 aa18.1■□□□□ 0.49
CPSF7-218ENST00000537641 KIF27Q86VH2 1401 aa18.08■□□□□ 0.48
CPSF7-218ENST00000537641 CLSPNQ9HAW4 1339 aa17.99■□□□□ 0.47
CPSF7-218ENST00000537641 APLP2Q06481 763 aa17.98■□□□□ 0.47
CPSF7-218ENST00000537641 HNRNPUL2Q1KMD3 747 aaKnown RBP17.98■□□□□ 0.47
CPSF7-218ENST00000537641 FANCD2Q9BXW9 1451 aa17.95■□□□□ 0.46
CPSF7-218ENST00000537641 FGD5Q6ZNL6 1462 aa17.94■□□□□ 0.46
CPSF7-218ENST00000537641 MIER1Q8N108 512 aa17.92■□□□□ 0.46
CPSF7-218ENST00000537641 CUX2O14529 1486 aa17.92■□□□□ 0.46
CPSF7-218ENST00000537641 DNMBPQ6XZF7 1577 aa17.91■□□□□ 0.46
CPSF7-218ENST00000537641 ARAP1Q96P48 1450 aa17.89■□□□□ 0.45
CPSF7-218ENST00000537641 LAMC3Q9Y6N6 1575 aa17.88■□□□□ 0.45
CPSF7-218ENST00000537641 YTHDC1Q96MU7 727 aaKnown RBP17.87■□□□□ 0.45
CPSF7-218ENST00000537641 IGF1RP08069 1367 aa17.85■□□□□ 0.45
CPSF7-218ENST00000537641 DHX57Q6P158 1386 aaKnown RBP17.85■□□□□ 0.45
CPSF7-218ENST00000537641 RRBP1Q9P2E9 1410 aaKnown RBP17.82■□□□□ 0.44
CPSF7-218ENST00000537641 TOPBP1Q92547 1522 aa17.82■□□□□ 0.44
CPSF7-218ENST00000537641 NESP48681 1621 aa17.82■□□□□ 0.44
CPSF7-218ENST00000537641 RANGAP1P46060 587 aaPredicted RBP17.81■□□□□ 0.44
CPSF7-218ENST00000537641 ABCA10Q8WWZ4 1543 aa17.79■□□□□ 0.44
CPSF7-218ENST00000537641 ARHGAP35Q9NRY4 1499 aa17.78■□□□□ 0.44
CPSF7-218ENST00000537641 POLA1P09884 1462 aaPredicted RBP17.77■□□□□ 0.44
CPSF7-218ENST00000537641 CARMIL1Q5VZK9 1371 aa17.77■□□□□ 0.44
CPSF7-218ENST00000537641 WDR97A6NE52 1622 aa17.74■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms