RNA–Protein interactions for RNA: ENST00000535871.1

CDCA3-205, Transcript of cell division cycle associated 3, humanhuman

TSL 5

Gene CDCA3, Length 454 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDCA3-205ENST00000535871 NISCHQ9Y2I1 1504 aa15.11■□□□□ 0.01
CDCA3-205ENST00000535871 CHIC1Q5VXU3 224 aa14.96□□□□□ -0.01
CDCA3-205ENST00000535871 AEBP2Q6ZN18 517 aaPredicted RBP14.62□□□□□ -0.07
CDCA3-205ENST00000535871 CCDC180Q9P1Z9 1646 aa13.32□□□□□ -0.28
CDCA3-205ENST00000535871 PHF23Q9BUL5 403 aaPredicted RBP13.2□□□□□ -0.3
CDCA3-205ENST00000535871 ZCCHC6Q5VYS8 1495 aaKnown RBP12.67□□□□□ -0.38
CDCA3-205ENST00000535871 DCAF1Q9Y4B6 1507 aa12.65□□□□□ -0.38
CDCA3-205ENST00000535871 MYO15BQ96JP2 1530 aa12.61□□□□□ -0.39
CDCA3-205ENST00000535871 ABCC9O60706 1549 aa12.5□□□□□ -0.41
CDCA3-205ENST00000535871 PLPPR3Q6T4P5 718 aa12.47□□□□□ -0.41
CDCA3-205ENST00000535871 NACADO15069 1562 aa12.46□□□□□ -0.42
CDCA3-205ENST00000535871 SENP3Q9H4L4 574 aaPredicted RBP12.34□□□□□ -0.43
CDCA3-205ENST00000535871 RB1CC1Q8TDY2 1594 aa12.34□□□□□ -0.43
CDCA3-205ENST00000535871 DCAF8L2P0C7V8 631 aa12.26□□□□□ -0.45
CDCA3-205ENST00000535871 SHROOM4Q9ULL8 1493 aa12.02□□□□□ -0.49
CDCA3-205ENST00000535871 SCRIBQ14160 1630 aa12□□□□□ -0.49
CDCA3-205ENST00000535871 UNC13AQ9UPW8 1703 aa11.95□□□□□ -0.5
CDCA3-205ENST00000535871 BICRAQ9NZM4 1560 aa11.88□□□□□ -0.51
CDCA3-205ENST00000535871 BAZ1AQ9NRL2 1556 aaPredicted RBP11.71□□□□□ -0.53
CDCA3-205ENST00000535871 PABPN1Q86U42 306 aaKnown RBP eCLIP11.7□□□□□ -0.54
CDCA3-205ENST00000535871 EHMT2Q96KQ7 1210 aa11.69□□□□□ -0.54
CDCA3-205ENST00000535871 ADRA2BP18089 450 aa11.64□□□□□ -0.55
CDCA3-205ENST00000535871 CECR2Q9BXF3 1484 aa11.63□□□□□ -0.55
CDCA3-205ENST00000535871 RSF1Q96T23 1441 aaPredicted RBP11.62□□□□□ -0.55
CDCA3-205ENST00000535871 SMARCA4P51532 1647 aa11.61□□□□□ -0.55
CDCA3-205ENST00000535871 PEG3Q9GZU2 1588 aa11.6□□□□□ -0.55
CDCA3-205ENST00000535871 KCNA4P22459 653 aa11.59□□□□□ -0.55
CDCA3-205ENST00000535871 MROH2BQ7Z745 1585 aa11.58□□□□□ -0.56
CDCA3-205ENST00000535871 EIF4G1Q04637 1599 aaKnown RBP11.56□□□□□ -0.56
CDCA3-205ENST00000535871 SMARCA2P51531 1590 aa11.54□□□□□ -0.56
CDCA3-205ENST00000535871 ATAD2BQ9ULI0 1458 aa11.49□□□□□ -0.57
CDCA3-205ENST00000535871 NCAPD3P42695 1498 aa11.48□□□□□ -0.57
CDCA3-205ENST00000535871 HMGXB3Q12766 1538 aa11.46□□□□□ -0.57
CDCA3-205ENST00000535871 SUPT5HO00267 1087 aaKnown RBP11.44□□□□□ -0.58
CDCA3-205ENST00000535871 WIZO95785 1651 aa11.43□□□□□ -0.58
CDCA3-205ENST00000535871 PPP6R1Q9UPN7 881 aa11.43□□□□□ -0.58
CDCA3-205ENST00000535871 TOP2AP11388 1531 aaKnown RBP11.43□□□□□ -0.58
CDCA3-205ENST00000535871 CC2D2AQ9P2K1 1620 aa11.38□□□□□ -0.59
CDCA3-205ENST00000535871 BAZ1BQ9UIG0 1483 aaKnown RBP11.38□□□□□ -0.59
CDCA3-205ENST00000535871 FOXD1Q16676 465 aa11.34□□□□□ -0.59
CDCA3-205ENST00000535871 CCDC88BA6NC98 1476 aa11.25□□□□□ -0.61
CDCA3-205ENST00000535871 SLC4A1APQ9BWU0 796 aaKnown RBP11.19□□□□□ -0.62
CDCA3-205ENST00000535871 CFTRP13569 1480 aa11.15□□□□□ -0.62
CDCA3-205ENST00000535871 CSRNP3Q8WYN3 585 aa11.15□□□□□ -0.62
CDCA3-205ENST00000535871 CADPSQ9ULU8 1353 aa11.13□□□□□ -0.63
CDCA3-205ENST00000535871 DNAJC5BQ9UF47 199 aa11.12□□□□□ -0.63
CDCA3-205ENST00000535871 LAMC3Q9Y6N6 1575 aa11.11□□□□□ -0.63
CDCA3-205ENST00000535871 PPP4R3CPQ6ZMV5 832 aa11.08□□□□□ -0.64
CDCA3-205ENST00000535871 PRDM2Q13029 1718 aa11.07□□□□□ -0.64
CDCA3-205ENST00000535871 PDS5BQ9NTI5 1447 aa11.02□□□□□ -0.64
CDCA3-205ENST00000535871 NCBP3Q53F19 620 aaKnown RBP11.01□□□□□ -0.65
CDCA3-205ENST00000535871 ABCC8Q09428 1581 aa10.97□□□□□ -0.65
CDCA3-205ENST00000535871 FANCD2Q9BXW9 1451 aa10.96□□□□□ -0.65
CDCA3-205ENST00000535871 WRNQ14191 1432 aaPredicted RBP eCLIP10.95□□□□□ -0.66
CDCA3-205ENST00000535871 CEP164Q9UPV0 1460 aa10.93□□□□□ -0.66
CDCA3-205ENST00000535871 NESP48681 1621 aa10.91□□□□□ -0.66
CDCA3-205ENST00000535871 PIAS4Q8N2W9 510 aaPredicted RBP10.91□□□□□ -0.66
CDCA3-205ENST00000535871 TOP2BQ02880 1626 aa10.91□□□□□ -0.66
CDCA3-205ENST00000535871 BIVM-ERCC5R4GMW8 1640 aa10.9□□□□□ -0.66
CDCA3-205ENST00000535871 TRIM41Q8WV44 630 aa10.89□□□□□ -0.67
CDCA3-205ENST00000535871 DNMBPQ6XZF7 1577 aa10.86□□□□□ -0.67
CDCA3-205ENST00000535871 EEA1Q15075 1411 aa10.84□□□□□ -0.67
CDCA3-205ENST00000535871 CUX1P39880 1505 aa10.84□□□□□ -0.67
CDCA3-205ENST00000535871 MRC2Q9UBG0 1479 aa10.84□□□□□ -0.67
CDCA3-205ENST00000535871 SYNJ1O43426 1573 aa10.84□□□□□ -0.67
CDCA3-205ENST00000535871 TOPBP1Q92547 1522 aa10.82□□□□□ -0.68
CDCA3-205ENST00000535871 KIF21AQ7Z4S6 1674 aa10.82□□□□□ -0.68
CDCA3-205ENST00000535871 WDR62O43379 1518 aa10.81□□□□□ -0.68
CDCA3-205ENST00000535871 NPM3O75607 178 aaKnown RBP10.81□□□□□ -0.68
CDCA3-205ENST00000535871 ERCC6Q03468 1493 aa10.8□□□□□ -0.68
CDCA3-205ENST00000535871 URB2Q14146 1524 aaKnown RBP10.79□□□□□ -0.68
CDCA3-205ENST00000535871 WDR97A6NE52 1622 aa10.76□□□□□ -0.69
CDCA3-205ENST00000535871 POLA1P09884 1462 aaPredicted RBP10.75□□□□□ -0.69
CDCA3-205ENST00000535871 FGD5Q6ZNL6 1462 aa10.75□□□□□ -0.69
CDCA3-205ENST00000535871 ABCA10Q8WWZ4 1543 aa10.75□□□□□ -0.69
CDCA3-205ENST00000535871 THOC2Q8NI27 1593 aaKnown RBP10.75□□□□□ -0.69
CDCA3-205ENST00000535871 SOGA1O94964 1423 aa10.72□□□□□ -0.69
CDCA3-205ENST00000535871 KIF27Q86VH2 1401 aa10.72□□□□□ -0.69
CDCA3-205ENST00000535871 IFT140Q96RY7 1462 aa10.72□□□□□ -0.69
CDCA3-205ENST00000535871 TARBP1Q13395 1621 aaKnown RBP10.69□□□□□ -0.7
CDCA3-205ENST00000535871 CUX2O14529 1486 aa10.68□□□□□ -0.7
CDCA3-205ENST00000535871 ZBTB22O15209 634 aa10.65□□□□□ -0.7
CDCA3-205ENST00000535871 ERICH3Q5RHP9 1530 aa10.64□□□□□ -0.71
CDCA3-205ENST00000535871 ABCA5Q8WWZ7 1642 aa10.63□□□□□ -0.71
CDCA3-205ENST00000535871 RAD54L2Q9Y4B4 1467 aa10.62□□□□□ -0.71
CDCA3-205ENST00000535871 IGF1RP08069 1367 aa10.62□□□□□ -0.71
CDCA3-205ENST00000535871 KIF21BO75037 1637 aa10.62□□□□□ -0.71
CDCA3-205ENST00000535871 PRXQ9BXM0 1461 aa10.61□□□□□ -0.71
CDCA3-205ENST00000535871 CNKSR2Q8WXI2 1034 aa10.61□□□□□ -0.71
CDCA3-205ENST00000535871 GAPVD1Q14C86 1478 aa10.61□□□□□ -0.71
CDCA3-205ENST00000535871 CUL7Q14999 1698 aa10.6□□□□□ -0.71
CDCA3-205ENST00000535871 GRIN2BQ13224 1484 aa10.59□□□□□ -0.71
CDCA3-205ENST00000535871 RUSC2Q8N2Y8 1516 aa10.58□□□□□ -0.72
CDCA3-205ENST00000535871 GOLGA3Q08378 1498 aa10.56□□□□□ -0.72
CDCA3-205ENST00000535871 MAGI1Q96QZ7 1491 aaPredicted RBP10.55□□□□□ -0.72
CDCA3-205ENST00000535871 CARMIL1Q5VZK9 1371 aa10.55□□□□□ -0.72
CDCA3-205ENST00000535871 TDRD9Q8NDG6 1382 aaKnown RBP10.55□□□□□ -0.72
CDCA3-205ENST00000535871 SCAF1Q9H7N4 1312 aaKnown RBP10.55□□□□□ -0.72
CDCA3-205ENST00000535871 RAPGEF2Q9Y4G8 1499 aa10.55□□□□□ -0.72
CDCA3-205ENST00000535871 FHAD1B1AJZ9 1412 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms