RNA–Protein interactions for RNA: ENST00000533728.1

CHKA-207, Transcript of choline kinase alpha, humanhuman

TSL 2

Gene CHKA, Length 662 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHKA-207ENST00000533728 NISCHQ9Y2I1 1504 aa21.45■■□□□ 1.02
CHKA-207ENST00000533728 DNAJC5BQ9UF47 199 aa20.83■□□□□ 0.93
CHKA-207ENST00000533728 ABCC9O60706 1549 aa20.82■□□□□ 0.92
CHKA-207ENST00000533728 DNAJC5Q9H3Z4 198 aa20.25■□□□□ 0.83
CHKA-207ENST00000533728 CCDC180Q9P1Z9 1646 aa19.38■□□□□ 0.69
CHKA-207ENST00000533728 RB1CC1Q8TDY2 1594 aa19.17■□□□□ 0.66
CHKA-207ENST00000533728 PABPN1Q86U42 306 aaKnown RBP eCLIP19.12■□□□□ 0.657e-8■□□□□ 9.5
CHKA-207ENST00000533728 CECR2Q9BXF3 1484 aa18.91■□□□□ 0.62
CHKA-207ENST00000533728 UNC13AQ9UPW8 1703 aa18.8■□□□□ 0.6
CHKA-207ENST00000533728 TRIM41Q8WV44 630 aa18.77■□□□□ 0.6
CHKA-207ENST00000533728 CC2D2AQ9P2K1 1620 aa18.74■□□□□ 0.59
CHKA-207ENST00000533728 NACADO15069 1562 aa18.65■□□□□ 0.58
CHKA-207ENST00000533728 BICRAQ9NZM4 1560 aa18.65■□□□□ 0.58
CHKA-207ENST00000533728 CUX2O14529 1486 aa18.57■□□□□ 0.56
CHKA-207ENST00000533728 EIF4G1Q04637 1599 aaKnown RBP18.33■□□□□ 0.52
CHKA-207ENST00000533728 SHROOM4Q9ULL8 1493 aa18.24■□□□□ 0.51
CHKA-207ENST00000533728 DCAF8L2P0C7V8 631 aa18.22■□□□□ 0.51
CHKA-207ENST00000533728 ERCC6Q03468 1493 aa18.1■□□□□ 0.49
CHKA-207ENST00000533728 AEBP2Q6ZN18 517 aaPredicted RBP18.1■□□□□ 0.49
CHKA-207ENST00000533728 MYO15BQ96JP2 1530 aa17.93■□□□□ 0.46
CHKA-207ENST00000533728 ZCCHC6Q5VYS8 1495 aaKnown RBP17.91■□□□□ 0.46
CHKA-207ENST00000533728 DCAF1Q9Y4B6 1507 aa17.88■□□□□ 0.45
CHKA-207ENST00000533728 ILDR1Q86SU0 546 aaPredicted RBP17.63■□□□□ 0.41
CHKA-207ENST00000533728 SCRIBQ14160 1630 aa17.61■□□□□ 0.41
CHKA-207ENST00000533728 THOC2Q8NI27 1593 aaKnown RBP17.6■□□□□ 0.41
CHKA-207ENST00000533728 TRHP20396 242 aaPredicted RBP17.47■□□□□ 0.39
CHKA-207ENST00000533728 BAZ1AQ9NRL2 1556 aaPredicted RBP17.46■□□□□ 0.39
CHKA-207ENST00000533728 OSCARQ8IYS5 282 aa17.45■□□□□ 0.38
CHKA-207ENST00000533728 NESP48681 1621 aa17.45■□□□□ 0.38
CHKA-207ENST00000533728 RIMBP3CA6NJZ7 1639 aa17.44■□□□□ 0.38
CHKA-207ENST00000533728 RIMBP3BA6NNM3 1639 aa17.44■□□□□ 0.38
CHKA-207ENST00000533728 RIMBP3Q9UFD9 1639 aa17.44■□□□□ 0.38
CHKA-207ENST00000533728 SMARCA2P51531 1590 aa17.36■□□□□ 0.37
CHKA-207ENST00000533728 KIF21AQ7Z4S6 1674 aa17.23■□□□□ 0.35
CHKA-207ENST00000533728 NCAPD3P42695 1498 aa17.21■□□□□ 0.35
CHKA-207ENST00000533728 ARHGEF11O15085 1522 aa17.21■□□□□ 0.34
CHKA-207ENST00000533728 CYB5RLQ6IPT4 315 aa17.15■□□□□ 0.34
CHKA-207ENST00000533728 LAMC3Q9Y6N6 1575 aa17.11■□□□□ 0.33
CHKA-207ENST00000533728 PDS5BQ9NTI5 1447 aa17.04■□□□□ 0.32
CHKA-207ENST00000533728 WDR62O43379 1518 aa17■□□□□ 0.31
CHKA-207ENST00000533728 MRC2Q9UBG0 1479 aa16.99■□□□□ 0.31
CHKA-207ENST00000533728 HMGXB3Q12766 1538 aa16.97■□□□□ 0.31
CHKA-207ENST00000533728 ATAD2BQ9ULI0 1458 aa16.95■□□□□ 0.3
CHKA-207ENST00000533728 ARAP1Q96P48 1450 aa16.93■□□□□ 0.3
CHKA-207ENST00000533728 BAZ1BQ9UIG0 1483 aaKnown RBP16.73■□□□□ 0.27
CHKA-207ENST00000533728 SUPT5HO00267 1087 aaKnown RBP16.7■□□□□ 0.26
CHKA-207ENST00000533728 LMTK3Q96Q04 1460 aa16.67■□□□□ 0.26
CHKA-207ENST00000533728 SMARCA4P51532 1647 aa16.64■□□□□ 0.25
CHKA-207ENST00000533728 CEP164Q9UPV0 1460 aa16.62■□□□□ 0.25
CHKA-207ENST00000533728 RSF1Q96T23 1441 aaPredicted RBP16.62■□□□□ 0.25
CHKA-207ENST00000533728 CADPSQ9ULU8 1353 aa16.61■□□□□ 0.25
CHKA-207ENST00000533728 SOCS7O14512 581 aa16.59■□□□□ 0.25
CHKA-207ENST00000533728 FBXO41Q8TF61 875 aa16.59■□□□□ 0.25
CHKA-207ENST00000533728 KDM4FA0A1W2PPD8 638 aa16.58■□□□□ 0.24
CHKA-207ENST00000533728 PEG3Q9GZU2 1588 aa16.57■□□□□ 0.24
CHKA-207ENST00000533728 ERCC6L2Q5T890 1561 aa16.56■□□□□ 0.24
CHKA-207ENST00000533728 CHD1O14646 1710 aa16.53■□□□□ 0.24
CHKA-207ENST00000533728 MROH2BQ7Z745 1585 aa16.49■□□□□ 0.23
CHKA-207ENST00000533728 ZNF608Q9ULD9 1512 aaPredicted RBP16.45■□□□□ 0.22
CHKA-207ENST00000533728 FANCD2Q9BXW9 1451 aa16.45■□□□□ 0.22
CHKA-207ENST00000533728 URB2Q14146 1524 aaKnown RBP16.41■□□□□ 0.22
CHKA-207ENST00000533728 HECW2Q9P2P5 1572 aa16.4■□□□□ 0.22
CHKA-207ENST00000533728 ILDR2Q71H61 639 aa16.4■□□□□ 0.22
CHKA-207ENST00000533728 WIZO95785 1651 aa16.34■□□□□ 0.21
CHKA-207ENST00000533728 IFT140Q96RY7 1462 aa16.34■□□□□ 0.21
CHKA-207ENST00000533728 EIF4G3O43432 1585 aaKnown RBP16.33■□□□□ 0.2
CHKA-207ENST00000533728 FBLN2P98095 1184 aa16.32■□□□□ 0.2
CHKA-207ENST00000533728 CHIC1Q5VXU3 224 aa16.3■□□□□ 0.2
CHKA-207ENST00000533728 KIF13AQ9H1H9 1805 aa16.29■□□□□ 0.2
CHKA-207ENST00000533728 DISP3Q9P2K9 1392 aa16.25■□□□□ 0.19
CHKA-207ENST00000533728 CLASP1Q7Z460 1538 aa16.24■□□□□ 0.19
CHKA-207ENST00000533728 GAPVD1Q14C86 1478 aa16.2■□□□□ 0.18
CHKA-207ENST00000533728 TOP2AP11388 1531 aaKnown RBP16.19■□□□□ 0.18
CHKA-207ENST00000533728 SYNJ2O15056 1496 aa16.18■□□□□ 0.18
CHKA-207ENST00000533728 KDM6BO15054 1643 aa16.13■□□□□ 0.17
CHKA-207ENST00000533728 ADGRL1O94910 1474 aa16.12■□□□□ 0.17
CHKA-207ENST00000533728 SYNJ1O43426 1573 aa16.12■□□□□ 0.17
CHKA-207ENST00000533728 AQRO60306 1485 aaKnown RBP eCLIP16.11■□□□□ 0.178e-9■■■■■ 46
CHKA-207ENST00000533728 CFTRP13569 1480 aa16.11■□□□□ 0.17
CHKA-207ENST00000533728 PRDM2Q13029 1718 aa16■□□□□ 0.15
CHKA-207ENST00000533728 TOPBP1Q92547 1522 aa15.97■□□□□ 0.15
CHKA-207ENST00000533728 SPATA31D1Q6ZQQ2 1576 aa15.96■□□□□ 0.15
CHKA-207ENST00000533728 FAM69CQ0P6D2 419 aa15.96■□□□□ 0.15
CHKA-207ENST00000533728 TARBP1Q13395 1621 aaKnown RBP15.96■□□□□ 0.15
CHKA-207ENST00000533728 CCDC88BA6NC98 1476 aa15.95■□□□□ 0.14
CHKA-207ENST00000533728 CHMP7Q8WUX9 453 aaPredicted RBP15.94■□□□□ 0.14
CHKA-207ENST00000533728 SNAPC4Q5SXM2 1469 aa15.91■□□□□ 0.14
CHKA-207ENST00000533728 ABCC10Q5T3U5 1492 aa15.91■□□□□ 0.14
CHKA-207ENST00000533728 TSPOAP1O95153 1857 aa15.91■□□□□ 0.14
CHKA-207ENST00000533728 DIP2BQ9P265 1576 aa15.85■□□□□ 0.13
CHKA-207ENST00000533728 ABCC8Q09428 1581 aa15.83■□□□□ 0.13
CHKA-207ENST00000533728 MAGI1Q96QZ7 1491 aaPredicted RBP15.81■□□□□ 0.12
CHKA-207ENST00000533728 DNMBPQ6XZF7 1577 aa15.79■□□□□ 0.12
CHKA-207ENST00000533728 TDRD9Q8NDG6 1382 aaKnown RBP15.76■□□□□ 0.11
CHKA-207ENST00000533728 MAPKBP1O60336 1514 aa15.73■□□□□ 0.11
CHKA-207ENST00000533728 TOP2BQ02880 1626 aa15.71■□□□□ 0.11
CHKA-207ENST00000533728 POLA1P09884 1462 aaPredicted RBP15.71■□□□□ 0.1
CHKA-207ENST00000533728 CEP170Q5SW79 1584 aa15.7■□□□□ 0.1
CHKA-207ENST00000533728 WDR97A6NE52 1622 aa15.69■□□□□ 0.1
CHKA-207ENST00000533728 CERKQ8TCT0 537 aa15.68■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms