RNA–Protein interactions for RNA: ENST00000528851.5

MS4A6A-208, Transcript of membrane spanning 4-domains A6A, human

TSL 1 (best) BASIC

Gene MS4A6A, Length 1,806 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MS4A6A-208	ENST00000528851	AEBP2	Q6ZN18	517 aa	Predicted RBP	21.26	■□□□□ 0.99
MS4A6A-208	ENST00000528851	CHIC1	Q5VXU3	224 aa		20.06	■□□□□ 0.8
MS4A6A-208	ENST00000528851	NISCH	Q9Y2I1	1504 aa		18.56	■□□□□ 0.56
MS4A6A-208	ENST00000528851	SENP3	Q9H4L4	574 aa	Predicted RBP	18.41	■□□□□ 0.54
MS4A6A-208	ENST00000528851	PHF23	Q9BUL5	403 aa	Predicted RBP	18	■□□□□ 0.47
MS4A6A-208	ENST00000528851	FOXD1	Q16676	465 aa		17.1	■□□□□ 0.33
MS4A6A-208	ENST00000528851	POTED	Q86YR6	584 aa		16.75	■□□□□ 0.27
MS4A6A-208	ENST00000528851	CCDC180	Q9P1Z9	1646 aa		16.4	■□□□□ 0.22
MS4A6A-208	ENST00000528851	MSH5	O43196	834 aa		16.36	■□□□□ 0.21
MS4A6A-208	ENST00000528851	ABCC9	O60706	1549 aa		16.03	■□□□□ 0.16
MS4A6A-208	ENST00000528851	PIAS4	Q8N2W9	510 aa	Predicted RBP	15.87	■□□□□ 0.13
MS4A6A-208	ENST00000528851	PLPPR3	Q6T4P5	718 aa		15.62	■□□□□ 0.09
MS4A6A-208	ENST00000528851	DCAF8L2	P0C7V8	631 aa		15.56	■□□□□ 0.08
MS4A6A-208	ENST00000528851	PPP6R1	Q9UPN7	881 aa		15.49	■□□□□ 0.07
MS4A6A-208	ENST00000528851	NACAD	O15069	1562 aa		15.48	■□□□□ 0.07
MS4A6A-208	ENST00000528851	RB1CC1	Q8TDY2	1594 aa		15.45	■□□□□ 0.06
MS4A6A-208	ENST00000528851	MYO15B	Q96JP2	1530 aa		15.45	■□□□□ 0.06
MS4A6A-208	ENST00000528851	ZCCHC6	Q5VYS8	1495 aa	Known RBP	15.44	■□□□□ 0.06
MS4A6A-208	ENST00000528851	ADRA2B	P18089	450 aa		15.43	■□□□□ 0.06
MS4A6A-208	ENST00000528851	DCAF1	Q9Y4B6	1507 aa		15.39	■□□□□ 0.05
MS4A6A-208	ENST00000528851	PABPN1	Q86U42	306 aa	Known RBP eCLIP	15.06	■□□□□ 0
MS4A6A-208	ENST00000528851	UNC13A	Q9UPW8	1703 aa		14.96	□□□□□ -0.01
MS4A6A-208	ENST00000528851	BICRA	Q9NZM4	1560 aa		14.95	□□□□□ -0.02
MS4A6A-208	ENST00000528851	SCRIB	Q14160	1630 aa		14.94	□□□□□ -0.02
MS4A6A-208	ENST00000528851	SHROOM4	Q9ULL8	1493 aa		14.87	□□□□□ -0.03
MS4A6A-208	ENST00000528851	DNAJC5B	Q9UF47	199 aa		14.73	□□□□□ -0.05
MS4A6A-208	ENST00000528851	EIF4G1	Q04637	1599 aa	Known RBP	14.56	□□□□□ -0.08
MS4A6A-208	ENST00000528851	DMRT2	Q9Y5R5	561 aa		14.49	□□□□□ -0.09
MS4A6A-208	ENST00000528851	CC2D2A	Q9P2K1	1620 aa		14.48	□□□□□ -0.09
MS4A6A-208	ENST00000528851	CECR2	Q9BXF3	1484 aa		14.44	□□□□□ -0.1
MS4A6A-208	ENST00000528851	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	14.37	□□□□□ -0.11
MS4A6A-208	ENST00000528851	SCAF1	Q9H7N4	1312 aa	Known RBP	14.35	□□□□□ -0.11
MS4A6A-208	ENST00000528851	NCAPD3	P42695	1498 aa		14.33	□□□□□ -0.12
MS4A6A-208	ENST00000528851	SMARCA4	P51532	1647 aa		14.33	□□□□□ -0.12
MS4A6A-208	ENST00000528851	ATAD2B	Q9ULI0	1458 aa		14.3	□□□□□ -0.12
MS4A6A-208	ENST00000528851	MAPK8IP2	Q13387	824 aa	Predicted RBP	14.29	□□□□□ -0.12
MS4A6A-208	ENST00000528851	CACNB1	Q02641	598 aa	Predicted RBP	14.28	□□□□□ -0.12
MS4A6A-208	ENST00000528851	SMARCA2	P51531	1590 aa		14.27	□□□□□ -0.12
MS4A6A-208	ENST00000528851	MROH2B	Q7Z745	1585 aa		14.27	□□□□□ -0.12
MS4A6A-208	ENST00000528851	PEG3	Q9GZU2	1588 aa		14.23	□□□□□ -0.13
MS4A6A-208	ENST00000528851	RSF1	Q96T23	1441 aa	Predicted RBP	14.18	□□□□□ -0.14
MS4A6A-208	ENST00000528851	HMGXB3	Q12766	1538 aa		14.18	□□□□□ -0.14
MS4A6A-208	ENST00000528851	BAZ1B	Q9UIG0	1483 aa	Known RBP	14.17	□□□□□ -0.14
MS4A6A-208	ENST00000528851	WIZ	O95785	1651 aa		14.08	□□□□□ -0.16
MS4A6A-208	ENST00000528851	TOP2A	P11388	1531 aa	Known RBP	13.97	□□□□□ -0.17
MS4A6A-208	ENST00000528851	CADPS	Q9ULU8	1353 aa		13.92	□□□□□ -0.18
MS4A6A-208	ENST00000528851	SUPT5H	O00267	1087 aa	Known RBP	13.9	□□□□□ -0.18
MS4A6A-208	ENST00000528851	NES	P48681	1621 aa		13.87	□□□□□ -0.19
MS4A6A-208	ENST00000528851	LAMC3	Q9Y6N6	1575 aa		13.87	□□□□□ -0.19
MS4A6A-208	ENST00000528851	CCDC88B	A6NC98	1476 aa		13.85	□□□□□ -0.19
MS4A6A-208	ENST00000528851	PDS5B	Q9NTI5	1447 aa		13.85	□□□□□ -0.19
MS4A6A-208	ENST00000528851	RNF39	Q9H2S5	420 aa		13.83	□□□□□ -0.2
MS4A6A-208	ENST00000528851	ERCC6	Q03468	1493 aa		13.82	□□□□□ -0.2
MS4A6A-208	ENST00000528851	CFTR	P13569	1480 aa		13.82	□□□□□ -0.2
MS4A6A-208	ENST00000528851	DCAF8L1	A6NGE4	600 aa		13.81	□□□□□ -0.2
MS4A6A-208	ENST00000528851	HOXD11	P31277	338 aa	Predicted RBP	13.75	□□□□□ -0.21
MS4A6A-208	ENST00000528851	FANCD2	Q9BXW9	1451 aa		13.7	□□□□□ -0.22
MS4A6A-208	ENST00000528851	CUX2	O14529	1486 aa		13.68	□□□□□ -0.22
MS4A6A-208	ENST00000528851	C1QBP	Q07021	282 aa	Known RBP	13.68	□□□□□ -0.22
MS4A6A-208	ENST00000528851	CEP164	Q9UPV0	1460 aa		13.67	□□□□□ -0.22
MS4A6A-208	ENST00000528851	MRC2	Q9UBG0	1479 aa		13.64	□□□□□ -0.23
MS4A6A-208	ENST00000528851	KIF21A	Q7Z4S6	1674 aa		13.63	□□□□□ -0.23
MS4A6A-208	ENST00000528851	THOC2	Q8NI27	1593 aa	Known RBP	13.6	□□□□□ -0.23
MS4A6A-208	ENST00000528851	WDR62	O43379	1518 aa		13.57	□□□□□ -0.24
MS4A6A-208	ENST00000528851	ABCC8	Q09428	1581 aa		13.56	□□□□□ -0.24
MS4A6A-208	ENST00000528851	PPP4R3CP	Q6ZMV5	832 aa		13.55	□□□□□ -0.24
MS4A6A-208	ENST00000528851	PRDM2	Q13029	1718 aa		13.55	□□□□□ -0.24
MS4A6A-208	ENST00000528851	URB2	Q14146	1524 aa	Known RBP	13.54	□□□□□ -0.24
MS4A6A-208	ENST00000528851	RNF216	Q9NWF9	866 aa	Predicted RBP	13.51	□□□□□ -0.25
MS4A6A-208	ENST00000528851	CNKSR2	Q8WXI2	1034 aa		13.49	□□□□□ -0.25
MS4A6A-208	ENST00000528851	TOPBP1	Q92547	1522 aa		13.48	□□□□□ -0.25
MS4A6A-208	ENST00000528851	DNMBP	Q6XZF7	1577 aa		13.44	□□□□□ -0.26
MS4A6A-208	ENST00000528851	IFT140	Q96RY7	1462 aa		13.42	□□□□□ -0.26
MS4A6A-208	ENST00000528851	SOGA1	O94964	1423 aa		13.38	□□□□□ -0.27
MS4A6A-208	ENST00000528851	WRN	Q14191	1432 aa	Predicted RBP eCLIP	13.37	□□□□□ -0.27
MS4A6A-208	ENST00000528851	CUX1	P39880	1505 aa		13.37	□□□□□ -0.27
MS4A6A-208	ENST00000528851	POLA1	P09884	1462 aa	Predicted RBP	13.36	□□□□□ -0.27
MS4A6A-208	ENST00000528851	FGD5	Q6ZNL6	1462 aa		13.34	□□□□□ -0.27
MS4A6A-208	ENST00000528851	RAD54L2	Q9Y4B4	1467 aa		13.32	□□□□□ -0.28
MS4A6A-208	ENST00000528851	ZNF608	Q9ULD9	1512 aa	Predicted RBP	13.3	□□□□□ -0.28
MS4A6A-208	ENST00000528851	TARBP1	Q13395	1621 aa	Known RBP	13.29	□□□□□ -0.28
MS4A6A-208	ENST00000528851	TOP2B	Q02880	1626 aa		13.28	□□□□□ -0.28
MS4A6A-208	ENST00000528851	DNAJC5	Q9H3Z4	198 aa		13.28	□□□□□ -0.28
MS4A6A-208	ENST00000528851	TDRD9	Q8NDG6	1382 aa	Known RBP	13.28	□□□□□ -0.28
MS4A6A-208	ENST00000528851	AQR	O60306	1485 aa	Known RBP eCLIP	13.27	□□□□□ -0.29
MS4A6A-208	ENST00000528851	BIVM-ERCC5	R4GMW8	1640 aa		13.25	□□□□□ -0.29
MS4A6A-208	ENST00000528851	SYNJ1	O43426	1573 aa		13.25	□□□□□ -0.29
MS4A6A-208	ENST00000528851	ABCA10	Q8WWZ4	1543 aa		13.24	□□□□□ -0.29
MS4A6A-208	ENST00000528851	WDR97	A6NE52	1622 aa		13.23	□□□□□ -0.29
MS4A6A-208	ENST00000528851	OSCAR	Q8IYS5	282 aa		13.23	□□□□□ -0.29
MS4A6A-208	ENST00000528851	GAPVD1	Q14C86	1478 aa		13.19	□□□□□ -0.3
MS4A6A-208	ENST00000528851	EIF4G3	O43432	1585 aa	Known RBP	13.19	□□□□□ -0.3
MS4A6A-208	ENST00000528851	GRIN2B	Q13224	1484 aa		13.18	□□□□□ -0.3
MS4A6A-208	ENST00000528851	TRIM41	Q8WV44	630 aa		13.16	□□□□□ -0.3
MS4A6A-208	ENST00000528851	CHMP7	Q8WUX9	453 aa	Predicted RBP	13.16	□□□□□ -0.3
MS4A6A-208	ENST00000528851	FBLN2	P98095	1184 aa		13.14	□□□□□ -0.31
MS4A6A-208	ENST00000528851	MAGI1	Q96QZ7	1491 aa	Predicted RBP	13.13	□□□□□ -0.31
MS4A6A-208	ENST00000528851	SNAPC4	Q5SXM2	1469 aa		13.11	□□□□□ -0.31
MS4A6A-208	ENST00000528851	KIF27	Q86VH2	1401 aa		13.11	□□□□□ -0.31
MS4A6A-208	ENST00000528851	ABCA5	Q8WWZ7	1642 aa		13.11	□□□□□ -0.31

Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms