RNA–Protein interactions for RNA: ENST00000521944.1

TRAPPC9-212, Transcript of trafficking protein particle complex 9, humanhuman

TSL 3

Gene TRAPPC9, Length 492 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC9-212ENST00000521944 AEBP2Q6ZN18 517 aaPredicted RBP25.97■■□□□ 1.75
TRAPPC9-212ENST00000521944 CHIC1Q5VXU3 224 aa25.35■■□□□ 1.65
TRAPPC9-212ENST00000521944 NISCHQ9Y2I1 1504 aa23.32■■□□□ 1.32
TRAPPC9-212ENST00000521944 SENP3Q9H4L4 574 aaPredicted RBP22.25■■□□□ 1.15
TRAPPC9-212ENST00000521944 PHF23Q9BUL5 403 aaPredicted RBP22.18■■□□□ 1.14
TRAPPC9-212ENST00000521944 ABCC9O60706 1549 aa21.92■■□□□ 1.1
TRAPPC9-212ENST00000521944 DNAJC5BQ9UF47 199 aa21.38■■□□□ 1.01
TRAPPC9-212ENST00000521944 CCDC180Q9P1Z9 1646 aa21.11■□□□□ 0.97
TRAPPC9-212ENST00000521944 PLPPR3Q6T4P5 718 aa20.59■□□□□ 0.89
TRAPPC9-212ENST00000521944 FOXD1Q16676 465 aa20.54■□□□□ 0.88
TRAPPC9-212ENST00000521944 RB1CC1Q8TDY2 1594 aa20.46■□□□□ 0.87
TRAPPC9-212ENST00000521944 PABPN1Q86U42 306 aaKnown RBP eCLIP20.37■□□□□ 0.85
TRAPPC9-212ENST00000521944 NACADO15069 1562 aa20.17■□□□□ 0.82
TRAPPC9-212ENST00000521944 DNAJC5Q9H3Z4 198 aa20.05■□□□□ 0.8
TRAPPC9-212ENST00000521944 UNC13AQ9UPW8 1703 aa20.04■□□□□ 0.8
TRAPPC9-212ENST00000521944 BICRAQ9NZM4 1560 aa20.03■□□□□ 0.8
TRAPPC9-212ENST00000521944 DCAF8L2P0C7V8 631 aa19.98■□□□□ 0.79
TRAPPC9-212ENST00000521944 CECR2Q9BXF3 1484 aa19.8■□□□□ 0.76
TRAPPC9-212ENST00000521944 CC2D2AQ9P2K1 1620 aa19.74■□□□□ 0.75
TRAPPC9-212ENST00000521944 MYO15BQ96JP2 1530 aa19.68■□□□□ 0.74
TRAPPC9-212ENST00000521944 ADRA2BP18089 450 aa19.61■□□□□ 0.73
TRAPPC9-212ENST00000521944 PPP6R1Q9UPN7 881 aa19.59■□□□□ 0.73
TRAPPC9-212ENST00000521944 SHROOM4Q9ULL8 1493 aa19.53■□□□□ 0.72
TRAPPC9-212ENST00000521944 EIF4G1Q04637 1599 aaKnown RBP19.53■□□□□ 0.72
TRAPPC9-212ENST00000521944 PIAS4Q8N2W9 510 aaPredicted RBP19.4■□□□□ 0.7
TRAPPC9-212ENST00000521944 SCRIBQ14160 1630 aa19.25■□□□□ 0.67
TRAPPC9-212ENST00000521944 DCAF1Q9Y4B6 1507 aa19.18■□□□□ 0.66
TRAPPC9-212ENST00000521944 ZCCHC6Q5VYS8 1495 aaKnown RBP19.16■□□□□ 0.66
TRAPPC9-212ENST00000521944 MSH5O43196 834 aa19.14■□□□□ 0.65
TRAPPC9-212ENST00000521944 CUX2O14529 1486 aa19.12■□□□□ 0.65
TRAPPC9-212ENST00000521944 ERCC6Q03468 1493 aa18.89■□□□□ 0.61
TRAPPC9-212ENST00000521944 TRIM41Q8WV44 630 aa18.8■□□□□ 0.6
TRAPPC9-212ENST00000521944 NCAPD3P42695 1498 aa18.71■□□□□ 0.59
TRAPPC9-212ENST00000521944 NESP48681 1621 aa18.67■□□□□ 0.58
TRAPPC9-212ENST00000521944 ATAD2BQ9ULI0 1458 aa18.56■□□□□ 0.56
TRAPPC9-212ENST00000521944 THOC2Q8NI27 1593 aaKnown RBP18.55■□□□□ 0.56
TRAPPC9-212ENST00000521944 HMGXB3Q12766 1538 aa18.43■□□□□ 0.54
TRAPPC9-212ENST00000521944 SMARCA2P51531 1590 aa18.37■□□□□ 0.53
TRAPPC9-212ENST00000521944 KIF21AQ7Z4S6 1674 aa18.31■□□□□ 0.52
TRAPPC9-212ENST00000521944 LAMC3Q9Y6N6 1575 aa18.3■□□□□ 0.52
TRAPPC9-212ENST00000521944 SMARCA4P51532 1647 aa18.3■□□□□ 0.52
TRAPPC9-212ENST00000521944 BAZ1BQ9UIG0 1483 aaKnown RBP18.26■□□□□ 0.51
TRAPPC9-212ENST00000521944 PDS5BQ9NTI5 1447 aa18.24■□□□□ 0.51
TRAPPC9-212ENST00000521944 OSCARQ8IYS5 282 aa18.19■□□□□ 0.5
TRAPPC9-212ENST00000521944 BAZ1AQ9NRL2 1556 aaPredicted RBP18.16■□□□□ 0.5
TRAPPC9-212ENST00000521944 SCAF1Q9H7N4 1312 aaKnown RBP18.15■□□□□ 0.5
TRAPPC9-212ENST00000521944 MRC2Q9UBG0 1479 aa18.14■□□□□ 0.5
TRAPPC9-212ENST00000521944 PEG3Q9GZU2 1588 aa18.14■□□□□ 0.49
TRAPPC9-212ENST00000521944 WDR62O43379 1518 aa18.13■□□□□ 0.49
TRAPPC9-212ENST00000521944 CADPSQ9ULU8 1353 aa18.1■□□□□ 0.49
TRAPPC9-212ENST00000521944 PPP4R3CPQ6ZMV5 832 aa18.07■□□□□ 0.48
TRAPPC9-212ENST00000521944 MROH2BQ7Z745 1585 aa18■□□□□ 0.47
TRAPPC9-212ENST00000521944 RIMBP3CA6NJZ7 1639 aa17.99■□□□□ 0.47
TRAPPC9-212ENST00000521944 RIMBP3BA6NNM3 1639 aa17.99■□□□□ 0.47
TRAPPC9-212ENST00000521944 RIMBP3Q9UFD9 1639 aa17.99■□□□□ 0.47
TRAPPC9-212ENST00000521944 CEP164Q9UPV0 1460 aa17.9■□□□□ 0.46
TRAPPC9-212ENST00000521944 ARHGEF11O15085 1522 aa17.88■□□□□ 0.45
TRAPPC9-212ENST00000521944 FANCD2Q9BXW9 1451 aa17.87■□□□□ 0.45
TRAPPC9-212ENST00000521944 CYB5RLQ6IPT4 315 aa17.84■□□□□ 0.45
TRAPPC9-212ENST00000521944 URB2Q14146 1524 aaKnown RBP17.81■□□□□ 0.44
TRAPPC9-212ENST00000521944 TRHP20396 242 aaPredicted RBP17.79■□□□□ 0.44
TRAPPC9-212ENST00000521944 MAPK8IP2Q13387 824 aaPredicted RBP17.79■□□□□ 0.44
TRAPPC9-212ENST00000521944 CFTRP13569 1480 aa17.75■□□□□ 0.43
TRAPPC9-212ENST00000521944 ZNF608Q9ULD9 1512 aaPredicted RBP17.73■□□□□ 0.43
TRAPPC9-212ENST00000521944 WIZO95785 1651 aa17.7■□□□□ 0.42
TRAPPC9-212ENST00000521944 DMRT2Q9Y5R5 561 aa17.69■□□□□ 0.42
TRAPPC9-212ENST00000521944 ARAP1Q96P48 1450 aa17.69■□□□□ 0.42
TRAPPC9-212ENST00000521944 NCBP3Q53F19 620 aaKnown RBP17.68■□□□□ 0.42
TRAPPC9-212ENST00000521944 CNKSR2Q8WXI2 1034 aa17.65■□□□□ 0.42
TRAPPC9-212ENST00000521944 IFT140Q96RY7 1462 aa17.59■□□□□ 0.41
TRAPPC9-212ENST00000521944 POTEDQ86YR6 584 aa17.53■□□□□ 0.4
TRAPPC9-212ENST00000521944 RSF1Q96T23 1441 aaPredicted RBP17.51■□□□□ 0.39
TRAPPC9-212ENST00000521944 EIF4G3O43432 1585 aaKnown RBP17.49■□□□□ 0.39
TRAPPC9-212ENST00000521944 CHD1O14646 1710 aa17.48■□□□□ 0.39
TRAPPC9-212ENST00000521944 AQRO60306 1485 aaKnown RBP eCLIP17.47■□□□□ 0.39
TRAPPC9-212ENST00000521944 TOPBP1Q92547 1522 aa17.47■□□□□ 0.39
TRAPPC9-212ENST00000521944 KCNA4P22459 653 aa17.45■□□□□ 0.38
TRAPPC9-212ENST00000521944 FBLN2P98095 1184 aa17.43■□□□□ 0.38
TRAPPC9-212ENST00000521944 TOP2AP11388 1531 aaKnown RBP17.38■□□□□ 0.37
TRAPPC9-212ENST00000521944 TARBP1Q13395 1621 aaKnown RBP17.37■□□□□ 0.37
TRAPPC9-212ENST00000521944 PRDM2Q13029 1718 aa17.35■□□□□ 0.37
TRAPPC9-212ENST00000521944 RNF216Q9NWF9 866 aaPredicted RBP17.33■□□□□ 0.36
TRAPPC9-212ENST00000521944 CLASP1Q7Z460 1538 aa17.32■□□□□ 0.36
TRAPPC9-212ENST00000521944 ABCC8Q09428 1581 aa17.29■□□□□ 0.36
TRAPPC9-212ENST00000521944 DNMBPQ6XZF7 1577 aa17.28■□□□□ 0.36
TRAPPC9-212ENST00000521944 CCDC88BA6NC98 1476 aa17.28■□□□□ 0.36
TRAPPC9-212ENST00000521944 NPM3O75607 178 aaKnown RBP17.27■□□□□ 0.36
TRAPPC9-212ENST00000521944 HOXD11P31277 338 aaPredicted RBP17.27■□□□□ 0.36
TRAPPC9-212ENST00000521944 TDRD9Q8NDG6 1382 aaKnown RBP17.26■□□□□ 0.35
TRAPPC9-212ENST00000521944 POLA1P09884 1462 aaPredicted RBP17.24■□□□□ 0.35
TRAPPC9-212ENST00000521944 RAD54L2Q9Y4B4 1467 aa17.24■□□□□ 0.35
TRAPPC9-212ENST00000521944 ILDR1Q86SU0 546 aaPredicted RBP17.22■□□□□ 0.35
TRAPPC9-212ENST00000521944 SNAPC4Q5SXM2 1469 aa17.21■□□□□ 0.35
TRAPPC9-212ENST00000521944 GAPVD1Q14C86 1478 aa17.18■□□□□ 0.34
TRAPPC9-212ENST00000521944 CHMP7Q8WUX9 453 aaPredicted RBP17.18■□□□□ 0.34
TRAPPC9-212ENST00000521944 SYNJ1O43426 1573 aa17.15■□□□□ 0.34
TRAPPC9-212ENST00000521944 SOGA1O94964 1423 aa17.15■□□□□ 0.34
TRAPPC9-212ENST00000521944 MAGI1Q96QZ7 1491 aaPredicted RBP17.1■□□□□ 0.33
TRAPPC9-212ENST00000521944 ERCC6L2Q5T890 1561 aa17.07■□□□□ 0.32
TRAPPC9-212ENST00000521944 SYNJ2O15056 1496 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 113.7 ms