RNA–Protein interactions for RNA: ENST00000521387.1

CTNNA1-227, Transcript of catenin alpha 1, humanhuman

TSL 2

Gene CTNNA1, Length 871 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-227ENST00000521387 AEBP2Q6ZN18 517 aaPredicted RBP22.12■■□□□ 1.13
CTNNA1-227ENST00000521387 CHIC1Q5VXU3 224 aa20.49■□□□□ 0.87
CTNNA1-227ENST00000521387 NISCHQ9Y2I1 1504 aa19.37■□□□□ 0.69
CTNNA1-227ENST00000521387 ABCC9O60706 1549 aa18.79■□□□□ 0.6
CTNNA1-227ENST00000521387 SENP3Q9H4L4 574 aaPredicted RBP18.79■□□□□ 0.6
CTNNA1-227ENST00000521387 DNAJC5BQ9UF47 199 aa18.7■□□□□ 0.58
CTNNA1-227ENST00000521387 PHF23Q9BUL5 403 aaPredicted RBP18.57■□□□□ 0.56
CTNNA1-227ENST00000521387 DNAJC5Q9H3Z4 198 aa17.79■□□□□ 0.44
CTNNA1-227ENST00000521387 FOXD1Q16676 465 aa17.7■□□□□ 0.42
CTNNA1-227ENST00000521387 CCDC180Q9P1Z9 1646 aa17.69■□□□□ 0.42
CTNNA1-227ENST00000521387 PABPN1Q86U42 306 aaKnown RBP eCLIP17.41■□□□□ 0.38
CTNNA1-227ENST00000521387 RB1CC1Q8TDY2 1594 aa17.34■□□□□ 0.37
CTNNA1-227ENST00000521387 POTEDQ86YR6 584 aa17.28■□□□□ 0.36
CTNNA1-227ENST00000521387 BICRAQ9NZM4 1560 aa17.02■□□□□ 0.31
CTNNA1-227ENST00000521387 CECR2Q9BXF3 1484 aa17.01■□□□□ 0.31
CTNNA1-227ENST00000521387 NACADO15069 1562 aa17.01■□□□□ 0.31
CTNNA1-227ENST00000521387 UNC13AQ9UPW8 1703 aa16.98■□□□□ 0.31
CTNNA1-227ENST00000521387 CC2D2AQ9P2K1 1620 aa16.89■□□□□ 0.29
CTNNA1-227ENST00000521387 DCAF8L2P0C7V8 631 aa16.77■□□□□ 0.28
CTNNA1-227ENST00000521387 MSH5O43196 834 aa16.62■□□□□ 0.25
CTNNA1-227ENST00000521387 EIF4G1Q04637 1599 aaKnown RBP16.61■□□□□ 0.25
CTNNA1-227ENST00000521387 CUX2O14529 1486 aa16.54■□□□□ 0.24
CTNNA1-227ENST00000521387 TRIM41Q8WV44 630 aa16.53■□□□□ 0.24
CTNNA1-227ENST00000521387 SHROOM4Q9ULL8 1493 aa16.53■□□□□ 0.24
CTNNA1-227ENST00000521387 MYO15BQ96JP2 1530 aa16.47■□□□□ 0.23
CTNNA1-227ENST00000521387 PIAS4Q8N2W9 510 aaPredicted RBP16.38■□□□□ 0.21
CTNNA1-227ENST00000521387 PPP6R1Q9UPN7 881 aa16.21■□□□□ 0.19
CTNNA1-227ENST00000521387 ERCC6Q03468 1493 aa16.2■□□□□ 0.18
CTNNA1-227ENST00000521387 SCRIBQ14160 1630 aa16.15■□□□□ 0.18
CTNNA1-227ENST00000521387 ADRA2BP18089 450 aa16.12■□□□□ 0.17
CTNNA1-227ENST00000521387 PLPPR3Q6T4P5 718 aa15.98■□□□□ 0.15
CTNNA1-227ENST00000521387 NESP48681 1621 aa15.9■□□□□ 0.14
CTNNA1-227ENST00000521387 DCAF1Q9Y4B6 1507 aa15.9■□□□□ 0.14
CTNNA1-227ENST00000521387 THOC2Q8NI27 1593 aaKnown RBP15.86■□□□□ 0.13
CTNNA1-227ENST00000521387 ZCCHC6Q5VYS8 1495 aaKnown RBP15.83■□□□□ 0.12
CTNNA1-227ENST00000521387 NCAPD3P42695 1498 aa15.8■□□□□ 0.12
CTNNA1-227ENST00000521387 OSCARQ8IYS5 282 aa15.67■□□□□ 0.1
CTNNA1-227ENST00000521387 SMARCA2P51531 1590 aa15.65■□□□□ 0.1
CTNNA1-227ENST00000521387 ATAD2BQ9ULI0 1458 aa15.61■□□□□ 0.09
CTNNA1-227ENST00000521387 BAZ1AQ9NRL2 1556 aaPredicted RBP15.59■□□□□ 0.09
CTNNA1-227ENST00000521387 RIMBP3CA6NJZ7 1639 aa15.55■□□□□ 0.08
CTNNA1-227ENST00000521387 RIMBP3BA6NNM3 1639 aa15.55■□□□□ 0.08
CTNNA1-227ENST00000521387 RIMBP3Q9UFD9 1639 aa15.55■□□□□ 0.08
CTNNA1-227ENST00000521387 KIF21AQ7Z4S6 1674 aa15.54■□□□□ 0.08
CTNNA1-227ENST00000521387 LAMC3Q9Y6N6 1575 aa15.5■□□□□ 0.07
CTNNA1-227ENST00000521387 HMGXB3Q12766 1538 aa15.5■□□□□ 0.07
CTNNA1-227ENST00000521387 TRHP20396 242 aaPredicted RBP15.48■□□□□ 0.07
CTNNA1-227ENST00000521387 PDS5BQ9NTI5 1447 aa15.47■□□□□ 0.07
CTNNA1-227ENST00000521387 WDR62O43379 1518 aa15.42■□□□□ 0.06
CTNNA1-227ENST00000521387 MRC2Q9UBG0 1479 aa15.41■□□□□ 0.06
CTNNA1-227ENST00000521387 ARHGEF11O15085 1522 aa15.41■□□□□ 0.06
CTNNA1-227ENST00000521387 CYB5RLQ6IPT4 315 aa15.4■□□□□ 0.06
CTNNA1-227ENST00000521387 ILDR1Q86SU0 546 aaPredicted RBP15.38■□□□□ 0.05
CTNNA1-227ENST00000521387 BAZ1BQ9UIG0 1483 aaKnown RBP15.33■□□□□ 0.04
CTNNA1-227ENST00000521387 SMARCA4P51532 1647 aa15.28■□□□□ 0.04
CTNNA1-227ENST00000521387 CADPSQ9ULU8 1353 aa15.26■□□□□ 0.03
CTNNA1-227ENST00000521387 ARAP1Q96P48 1450 aa15.23■□□□□ 0.03
CTNNA1-227ENST00000521387 PEG3Q9GZU2 1588 aa15.15■□□□□ 0.02
CTNNA1-227ENST00000521387 CEP164Q9UPV0 1460 aa15.12■□□□□ 0.01
CTNNA1-227ENST00000521387 FANCD2Q9BXW9 1451 aa15.06■□□□□ 0
CTNNA1-227ENST00000521387 URB2Q14146 1524 aaKnown RBP15.05■□□□□ -0
CTNNA1-227ENST00000521387 ZNF608Q9ULD9 1512 aaPredicted RBP15.05■□□□□ -0
CTNNA1-227ENST00000521387 MAPK8IP2Q13387 824 aaPredicted RBP15.01□□□□□ -0.01
CTNNA1-227ENST00000521387 RSF1Q96T23 1441 aaPredicted RBP14.97□□□□□ -0.01
CTNNA1-227ENST00000521387 MROH2BQ7Z745 1585 aa14.95□□□□□ -0.02
CTNNA1-227ENST00000521387 IFT140Q96RY7 1462 aa14.89□□□□□ -0.03
CTNNA1-227ENST00000521387 CFTRP13569 1480 aa14.88□□□□□ -0.03
CTNNA1-227ENST00000521387 CHD1O14646 1710 aa14.86□□□□□ -0.03
CTNNA1-227ENST00000521387 KDM4FA0A1W2PPD8 638 aa14.86□□□□□ -0.03
CTNNA1-227ENST00000521387 DMRT2Q9Y5R5 561 aa14.85□□□□□ -0.03
CTNNA1-227ENST00000521387 FBLN2P98095 1184 aa14.81□□□□□ -0.04
CTNNA1-227ENST00000521387 EIF4G3O43432 1585 aaKnown RBP14.8□□□□□ -0.04
CTNNA1-227ENST00000521387 AQRO60306 1485 aaKnown RBP eCLIP14.78□□□□□ -0.043e-7■■■■□ 24
CTNNA1-227ENST00000521387 CLASP1Q7Z460 1538 aa14.75□□□□□ -0.05
CTNNA1-227ENST00000521387 CACNB1Q02641 598 aaPredicted RBP14.7□□□□□ -0.06
CTNNA1-227ENST00000521387 WIZO95785 1651 aa14.68□□□□□ -0.06
CTNNA1-227ENST00000521387 TOPBP1Q92547 1522 aa14.67□□□□□ -0.06
CTNNA1-227ENST00000521387 GAPVD1Q14C86 1478 aa14.66□□□□□ -0.06
CTNNA1-227ENST00000521387 TARBP1Q13395 1621 aaKnown RBP14.63□□□□□ -0.07
CTNNA1-227ENST00000521387 FBXO41Q8TF61 875 aa14.56□□□□□ -0.08
CTNNA1-227ENST00000521387 KIF13AQ9H1H9 1805 aa14.55□□□□□ -0.08
CTNNA1-227ENST00000521387 SYNJ1O43426 1573 aa14.55□□□□□ -0.08
CTNNA1-227ENST00000521387 CHMP7Q8WUX9 453 aaPredicted RBP14.54□□□□□ -0.08
CTNNA1-227ENST00000521387 SCAF1Q9H7N4 1312 aaKnown RBP14.54□□□□□ -0.08
CTNNA1-227ENST00000521387 SNAPC4Q5SXM2 1469 aa14.54□□□□□ -0.08
CTNNA1-227ENST00000521387 TDRD9Q8NDG6 1382 aaKnown RBP14.53□□□□□ -0.08
CTNNA1-227ENST00000521387 ERCC6L2Q5T890 1561 aa14.51□□□□□ -0.09
CTNNA1-227ENST00000521387 ABCC8Q09428 1581 aa14.49□□□□□ -0.09
CTNNA1-227ENST00000521387 HECW2Q9P2P5 1572 aa14.49□□□□□ -0.09
CTNNA1-227ENST00000521387 DNMBPQ6XZF7 1577 aa14.48□□□□□ -0.09
CTNNA1-227ENST00000521387 RAD54L2Q9Y4B4 1467 aa14.48□□□□□ -0.09
CTNNA1-227ENST00000521387 POLA1P09884 1462 aaPredicted RBP14.47□□□□□ -0.09
CTNNA1-227ENST00000521387 PRDM2Q13029 1718 aa14.46□□□□□ -0.09
CTNNA1-227ENST00000521387 LMTK3Q96Q04 1460 aa14.45□□□□□ -0.1
CTNNA1-227ENST00000521387 ILDR2Q71H61 639 aa14.43□□□□□ -0.1
CTNNA1-227ENST00000521387 FAM69CQ0P6D2 419 aa14.42□□□□□ -0.1
CTNNA1-227ENST00000521387 MAGI1Q96QZ7 1491 aaPredicted RBP14.42□□□□□ -0.1
CTNNA1-227ENST00000521387 SOCS7O14512 581 aa14.41□□□□□ -0.1
CTNNA1-227ENST00000521387 SYNJ2O15056 1496 aa14.4□□□□□ -0.1
CTNNA1-227ENST00000521387 DCAF8L1A6NGE4 600 aa14.39□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms