RNA–Protein interactions for RNA: ENST00000520687.1

SPARC-202, Transcript of secreted protein acidic and cysteine rich, humanhuman

TSL 2

Gene SPARC, Length 1,598 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPARC-202ENST00000520687 NISCHQ9Y2I1 1504 aa21.6■■□□□ 1.05
SPARC-202ENST00000520687 ABCC9O60706 1549 aa19.86■□□□□ 0.77
SPARC-202ENST00000520687 DNAJC5BQ9UF47 199 aa19.44■□□□□ 0.7
SPARC-202ENST00000520687 CCDC180Q9P1Z9 1646 aa18.99■□□□□ 0.63
SPARC-202ENST00000520687 DNAJC5Q9H3Z4 198 aa18.68■□□□□ 0.58
SPARC-202ENST00000520687 RB1CC1Q8TDY2 1594 aa18.55■□□□□ 0.56
SPARC-202ENST00000520687 PABPN1Q86U42 306 aaKnown RBP eCLIP18.28■□□□□ 0.52
SPARC-202ENST00000520687 ZCCHC6Q5VYS8 1495 aaKnown RBP18.19■□□□□ 0.5
SPARC-202ENST00000520687 NACADO15069 1562 aa18.18■□□□□ 0.5
SPARC-202ENST00000520687 UNC13AQ9UPW8 1703 aa18.03■□□□□ 0.48
SPARC-202ENST00000520687 CECR2Q9BXF3 1484 aa18.03■□□□□ 0.48
SPARC-202ENST00000520687 DCAF1Q9Y4B6 1507 aa17.96■□□□□ 0.47
SPARC-202ENST00000520687 BICRAQ9NZM4 1560 aa17.96■□□□□ 0.47
SPARC-202ENST00000520687 CC2D2AQ9P2K1 1620 aa17.91■□□□□ 0.46
SPARC-202ENST00000520687 SHROOM4Q9ULL8 1493 aa17.77■□□□□ 0.44
SPARC-202ENST00000520687 DCAF8L2P0C7V8 631 aa17.76■□□□□ 0.43
SPARC-202ENST00000520687 MYO15BQ96JP2 1530 aa17.74■□□□□ 0.43
SPARC-202ENST00000520687 EIF4G1Q04637 1599 aaKnown RBP17.64■□□□□ 0.41
SPARC-202ENST00000520687 CUX2O14529 1486 aa17.63■□□□□ 0.41
SPARC-202ENST00000520687 TRIM41Q8WV44 630 aa17.42■□□□□ 0.38
SPARC-202ENST00000520687 ERCC6Q03468 1493 aa17.28■□□□□ 0.36
SPARC-202ENST00000520687 SCRIBQ14160 1630 aa17.27■□□□□ 0.36
SPARC-202ENST00000520687 SUPT5HO00267 1087 aaKnown RBP17.27■□□□□ 0.35
SPARC-202ENST00000520687 RSF1Q96T23 1441 aaPredicted RBP16.88■□□□□ 0.29
SPARC-202ENST00000520687 THOC2Q8NI27 1593 aaKnown RBP16.84■□□□□ 0.29
SPARC-202ENST00000520687 CHIC1Q5VXU3 224 aa16.78■□□□□ 0.28
SPARC-202ENST00000520687 NCAPD3P42695 1498 aa16.77■□□□□ 0.27
SPARC-202ENST00000520687 NESP48681 1621 aa16.74■□□□□ 0.27
SPARC-202ENST00000520687 AEBP2Q6ZN18 517 aaPredicted RBP16.72■□□□□ 0.27
SPARC-202ENST00000520687 BAZ1AQ9NRL2 1556 aaPredicted RBP16.72■□□□□ 0.27
SPARC-202ENST00000520687 SMARCA2P51531 1590 aa16.64■□□□□ 0.25
SPARC-202ENST00000520687 MROH2BQ7Z745 1585 aa16.64■□□□□ 0.25
SPARC-202ENST00000520687 SMARCA4P51532 1647 aa16.62■□□□□ 0.25
SPARC-202ENST00000520687 OSCARQ8IYS5 282 aa16.61■□□□□ 0.25
SPARC-202ENST00000520687 HMGXB3Q12766 1538 aa16.58■□□□□ 0.25
SPARC-202ENST00000520687 LAMC3Q9Y6N6 1575 aa16.58■□□□□ 0.24
SPARC-202ENST00000520687 ATAD2BQ9ULI0 1458 aa16.54■□□□□ 0.24
SPARC-202ENST00000520687 WIZO95785 1651 aa16.54■□□□□ 0.24
SPARC-202ENST00000520687 KIF21AQ7Z4S6 1674 aa16.53■□□□□ 0.24
SPARC-202ENST00000520687 PDS5BQ9NTI5 1447 aa16.52■□□□□ 0.24
SPARC-202ENST00000520687 RIMBP3CA6NJZ7 1639 aa16.48■□□□□ 0.23
SPARC-202ENST00000520687 RIMBP3BA6NNM3 1639 aa16.48■□□□□ 0.23
SPARC-202ENST00000520687 RIMBP3Q9UFD9 1639 aa16.48■□□□□ 0.23
SPARC-202ENST00000520687 PEG3Q9GZU2 1588 aa16.47■□□□□ 0.23
SPARC-202ENST00000520687 TOP2AP11388 1531 aaKnown RBP16.42■□□□□ 0.22
SPARC-202ENST00000520687 TRHP20396 242 aaPredicted RBP16.42■□□□□ 0.22
SPARC-202ENST00000520687 MRC2Q9UBG0 1479 aa16.42■□□□□ 0.22
SPARC-202ENST00000520687 WDR62O43379 1518 aa16.41■□□□□ 0.22
SPARC-202ENST00000520687 BAZ1BQ9UIG0 1483 aaKnown RBP16.36■□□□□ 0.21
SPARC-202ENST00000520687 ARHGEF11O15085 1522 aa16.34■□□□□ 0.21
SPARC-202ENST00000520687 CYB5RLQ6IPT4 315 aa16.24■□□□□ 0.19
SPARC-202ENST00000520687 CCDC88BA6NC98 1476 aa16.23■□□□□ 0.19
SPARC-202ENST00000520687 CADPSQ9ULU8 1353 aa16.2■□□□□ 0.18
SPARC-202ENST00000520687 CEP164Q9UPV0 1460 aa16.15■□□□□ 0.18
SPARC-202ENST00000520687 ILDR1Q86SU0 546 aaPredicted RBP16.13■□□□□ 0.17
SPARC-202ENST00000520687 ARAP1Q96P48 1450 aa16.09■□□□□ 0.17
SPARC-202ENST00000520687 LOC105371045A0A1W2PR82 267 aa16.06■□□□□ 0.16
SPARC-202ENST00000520687 FANCD2Q9BXW9 1451 aa16.02■□□□□ 0.15
SPARC-202ENST00000520687 EEA1Q15075 1411 aa15.96■□□□□ 0.15
SPARC-202ENST00000520687 URB2Q14146 1524 aaKnown RBP15.91■□□□□ 0.14
SPARC-202ENST00000520687 PRDM2Q13029 1718 aa15.91■□□□□ 0.14
SPARC-202ENST00000520687 WRNQ14191 1432 aaPredicted RBP eCLIP15.89■□□□□ 0.13
SPARC-202ENST00000520687 ABCC8Q09428 1581 aa15.89■□□□□ 0.13
SPARC-202ENST00000520687 FAM9AQ8IZU1 332 aaPredicted RBP15.88■□□□□ 0.13
SPARC-202ENST00000520687 IFT140Q96RY7 1462 aa15.87■□□□□ 0.13
SPARC-202ENST00000520687 ZNF608Q9ULD9 1512 aaPredicted RBP15.86■□□□□ 0.13
SPARC-202ENST00000520687 CHD1O14646 1710 aa15.83■□□□□ 0.13
SPARC-202ENST00000520687 CFTRP13569 1480 aa15.81■□□□□ 0.12
SPARC-202ENST00000520687 EIF4G3O43432 1585 aaKnown RBP15.78■□□□□ 0.12
SPARC-202ENST00000520687 CSRNP3Q8WYN3 585 aa15.77■□□□□ 0.11
SPARC-202ENST00000520687 TRIM26Q12899 539 aaPredicted RBP15.76■□□□□ 0.11
SPARC-202ENST00000520687 SOGA1O94964 1423 aa15.72■□□□□ 0.11
SPARC-202ENST00000520687 PCGF6Q9BYE7 350 aa15.72■□□□□ 0.11
SPARC-202ENST00000520687 BIVM-ERCC5R4GMW8 1640 aa15.72■□□□□ 0.11
SPARC-202ENST00000520687 SYNJ1O43426 1573 aa15.71■□□□□ 0.11
SPARC-202ENST00000520687 FBLN2P98095 1184 aa15.71■□□□□ 0.11
SPARC-202ENST00000520687 TNIKQ9UKE5 1360 aa15.71■□□□□ 0.11
SPARC-202ENST00000520687 TOP2BQ02880 1626 aa15.71■□□□□ 0.11
SPARC-202ENST00000520687 GOLGA3Q08378 1498 aa15.66■□□□□ 0.1
SPARC-202ENST00000520687 CLASP1Q7Z460 1538 aa15.65■□□□□ 0.1
SPARC-202ENST00000520687 HRCP23327 699 aa15.63■□□□□ 0.09
SPARC-202ENST00000520687 KIF21BO75037 1637 aa15.61■□□□□ 0.09
SPARC-202ENST00000520687 AQRO60306 1485 aaKnown RBP eCLIP15.6■□□□□ 0.09
SPARC-202ENST00000520687 RUSC2Q8N2Y8 1516 aa15.59■□□□□ 0.09
SPARC-202ENST00000520687 TOPBP1Q92547 1522 aa15.59■□□□□ 0.09
SPARC-202ENST00000520687 CUX1P39880 1505 aa15.57■□□□□ 0.08
SPARC-202ENST00000520687 CEP162Q5TB80 1403 aa15.57■□□□□ 0.08
SPARC-202ENST00000520687 GAPVD1Q14C86 1478 aa15.57■□□□□ 0.08
SPARC-202ENST00000520687 KDM4FA0A1W2PPD8 638 aa15.56■□□□□ 0.08
SPARC-202ENST00000520687 UBTFP17480 764 aaKnown RBP15.55■□□□□ 0.08
SPARC-202ENST00000520687 EHMT2Q96KQ7 1210 aa15.54■□□□□ 0.08
SPARC-202ENST00000520687 TARBP1Q13395 1621 aaKnown RBP15.52■□□□□ 0.08
SPARC-202ENST00000520687 ERCC6L2Q5T890 1561 aa15.51■□□□□ 0.07
SPARC-202ENST00000520687 KIF27Q86VH2 1401 aa15.5■□□□□ 0.07
SPARC-202ENST00000520687 DNMBPQ6XZF7 1577 aa15.48■□□□□ 0.07
SPARC-202ENST00000520687 ERICH3Q5RHP9 1530 aa15.48■□□□□ 0.07
SPARC-202ENST00000520687 CHMP7Q8WUX9 453 aaPredicted RBP15.46■□□□□ 0.07
SPARC-202ENST00000520687 KIF13AQ9H1H9 1805 aa15.46■□□□□ 0.06
SPARC-202ENST00000520687 PRXQ9BXM0 1461 aa15.45■□□□□ 0.06
SPARC-202ENST00000520687 SNAPC4Q5SXM2 1469 aa15.44■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms