RNA–Protein interactions for RNA: ENST00000515351.1

PCDH1-208, Transcript of protocadherin 1, humanhuman

TSL 2

Gene PCDH1, Length 2,489 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-208ENST00000515351 NISCHQ9Y2I1 1504 aa31.67■■■□□ 2.66
PCDH1-208ENST00000515351 CCDC180Q9P1Z9 1646 aa27.14■■□□□ 1.94
PCDH1-208ENST00000515351 ZCCHC6Q5VYS8 1495 aaKnown RBP26.78■■□□□ 1.88
PCDH1-208ENST00000515351 SHROOM4Q9ULL8 1493 aa26.66■■□□□ 1.86
PCDH1-208ENST00000515351 DCAF1Q9Y4B6 1507 aa26.09■■□□□ 1.77
PCDH1-208ENST00000515351 SUPT5HO00267 1087 aaKnown RBP26.08■■□□□ 1.77
PCDH1-208ENST00000515351 DCAF8L2P0C7V8 631 aa26■■□□□ 1.75
PCDH1-208ENST00000515351 MYO15BQ96JP2 1530 aa25.4■■□□□ 1.66
PCDH1-208ENST00000515351 CHIC1Q5VXU3 224 aa25.38■■□□□ 1.65
PCDH1-208ENST00000515351 ABCC9O60706 1549 aa25.28■■□□□ 1.64
PCDH1-208ENST00000515351 SCRIBQ14160 1630 aa25.23■■□□□ 1.63
PCDH1-208ENST00000515351 NACADO15069 1562 aa25.04■■□□□ 1.6
PCDH1-208ENST00000515351 RSF1Q96T23 1441 aaPredicted RBP24.95■■□□□ 1.58
PCDH1-208ENST00000515351 RB1CC1Q8TDY2 1594 aa24.73■■□□□ 1.55
PCDH1-208ENST00000515351 CECR2Q9BXF3 1484 aa24.62■■□□□ 1.53
PCDH1-208ENST00000515351 MROH2BQ7Z745 1585 aa24.57■■□□□ 1.52
PCDH1-208ENST00000515351 LOC105371045A0A1W2PR82 267 aa24.54■■□□□ 1.52
PCDH1-208ENST00000515351 WIZO95785 1651 aa24.47■■□□□ 1.51
PCDH1-208ENST00000515351 PCGF6Q9BYE7 350 aa24.39■■□□□ 1.49
PCDH1-208ENST00000515351 HRCP23327 699 aa24.38■■□□□ 1.49
PCDH1-208ENST00000515351 TRIM41Q8WV44 630 aa24.37■■□□□ 1.49
PCDH1-208ENST00000515351 BAZ1AQ9NRL2 1556 aaPredicted RBP24.36■■□□□ 1.49
PCDH1-208ENST00000515351 UNC13AQ9UPW8 1703 aa24.36■■□□□ 1.49
PCDH1-208ENST00000515351 SMARCA4P51532 1647 aa24.18■■□□□ 1.46
PCDH1-208ENST00000515351 EIF4G1Q04637 1599 aaKnown RBP24.15■■□□□ 1.46
PCDH1-208ENST00000515351 TOP2AP11388 1531 aaKnown RBP24.12■■□□□ 1.45
PCDH1-208ENST00000515351 FAM9AQ8IZU1 332 aaPredicted RBP24.06■■□□□ 1.44
PCDH1-208ENST00000515351 TRIM26Q12899 539 aaPredicted RBP24.05■■□□□ 1.44
PCDH1-208ENST00000515351 SMARCA2P51531 1590 aa23.97■■□□□ 1.43
PCDH1-208ENST00000515351 BICRAQ9NZM4 1560 aa23.96■■□□□ 1.43
PCDH1-208ENST00000515351 CCDC88BA6NC98 1476 aa23.93■■□□□ 1.42
PCDH1-208ENST00000515351 ABCC8Q09428 1581 aa23.81■■□□□ 1.4
PCDH1-208ENST00000515351 PPARGC1BQ86YN6 1023 aaKnown RBP23.78■■□□□ 1.4
PCDH1-208ENST00000515351 EHMT2Q96KQ7 1210 aa23.78■■□□□ 1.4
PCDH1-208ENST00000515351 PEG3Q9GZU2 1588 aa23.78■■□□□ 1.4
PCDH1-208ENST00000515351 PABPN1Q86U42 306 aaKnown RBP eCLIP23.77■■□□□ 1.4
PCDH1-208ENST00000515351 ATAD2BQ9ULI0 1458 aa23.53■■□□□ 1.36
PCDH1-208ENST00000515351 SOGA1O94964 1423 aa23.52■■□□□ 1.36
PCDH1-208ENST00000515351 EEA1Q15075 1411 aa23.51■■□□□ 1.35
PCDH1-208ENST00000515351 ZEB1P37275 1124 aaPredicted RBP23.5■■□□□ 1.35
PCDH1-208ENST00000515351 BAZ1BQ9UIG0 1483 aaKnown RBP23.46■■□□□ 1.35
PCDH1-208ENST00000515351 WRNQ14191 1432 aaPredicted RBP eCLIP23.44■■□□□ 1.34
PCDH1-208ENST00000515351 RUSC2Q8N2Y8 1516 aa23.41■■□□□ 1.34
PCDH1-208ENST00000515351 CEP162Q5TB80 1403 aa23.4■■□□□ 1.34
PCDH1-208ENST00000515351 TNIKQ9UKE5 1360 aa23.39■■□□□ 1.33
PCDH1-208ENST00000515351 SYNJ1O43426 1573 aa23.38■■□□□ 1.33
PCDH1-208ENST00000515351 CSRNP3Q8WYN3 585 aa23.37■■□□□ 1.33
PCDH1-208ENST00000515351 GOLGA3Q08378 1498 aa23.3■■□□□ 1.32
PCDH1-208ENST00000515351 KIF21BO75037 1637 aa23.24■■□□□ 1.31
PCDH1-208ENST00000515351 UBTFP17480 764 aaKnown RBP23.21■■□□□ 1.31
PCDH1-208ENST00000515351 CEP164Q9UPV0 1460 aa23.19■■□□□ 1.3
PCDH1-208ENST00000515351 HMGXB3Q12766 1538 aa23.17■■□□□ 1.3
PCDH1-208ENST00000515351 TOP2BQ02880 1626 aa23.15■■□□□ 1.3
PCDH1-208ENST00000515351 BIVM-ERCC5R4GMW8 1640 aa23.12■■□□□ 1.29
PCDH1-208ENST00000515351 NCAPD3P42695 1498 aa23.12■■□□□ 1.29
PCDH1-208ENST00000515351 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.04■■□□□ 1.28
PCDH1-208ENST00000515351 TTBK1Q5TCY1 1321 aaPredicted RBP23.01■■□□□ 1.27
PCDH1-208ENST00000515351 CCER1Q8TC90 406 aaPredicted RBP22.99■■□□□ 1.27
PCDH1-208ENST00000515351 RAPGEF2Q9Y4G8 1499 aa22.99■■□□□ 1.27
PCDH1-208ENST00000515351 CLIP1P30622 1438 aa22.99■■□□□ 1.27
PCDH1-208ENST00000515351 PRDM2Q13029 1718 aa22.9■■□□□ 1.26
PCDH1-208ENST00000515351 VPS8Q8N3P4 1428 aa22.9■■□□□ 1.26
PCDH1-208ENST00000515351 CUX1P39880 1505 aa22.9■■□□□ 1.26
PCDH1-208ENST00000515351 CFTRP13569 1480 aa22.89■■□□□ 1.25
PCDH1-208ENST00000515351 ERICH3Q5RHP9 1530 aa22.88■■□□□ 1.25
PCDH1-208ENST00000515351 PRXQ9BXM0 1461 aa22.83■■□□□ 1.25
PCDH1-208ENST00000515351 KIF27Q86VH2 1401 aa22.74■■□□□ 1.23
PCDH1-208ENST00000515351 APLP2Q06481 763 aa22.69■■□□□ 1.22
PCDH1-208ENST00000515351 RANGAP1P46060 587 aaPredicted RBP22.67■■□□□ 1.22
PCDH1-208ENST00000515351 ARAP1Q96P48 1450 aa22.66■■□□□ 1.22
PCDH1-208ENST00000515351 CADPSQ9ULU8 1353 aa22.62■■□□□ 1.21
PCDH1-208ENST00000515351 CC2D2AQ9P2K1 1620 aa22.6■■□□□ 1.21
PCDH1-208ENST00000515351 HNRNPUL2Q1KMD3 747 aaKnown RBP22.58■■□□□ 1.21
PCDH1-208ENST00000515351 CUX2O14529 1486 aa22.52■■□□□ 1.2
PCDH1-208ENST00000515351 FGD5Q6ZNL6 1462 aa22.5■■□□□ 1.19
PCDH1-208ENST00000515351 ARHGAP35Q9NRY4 1499 aa22.48■■□□□ 1.19
PCDH1-208ENST00000515351 DIEXFQ68CQ4 756 aaKnown RBP22.48■■□□□ 1.19
PCDH1-208ENST00000515351 IGF1RP08069 1367 aa22.47■■□□□ 1.19
PCDH1-208ENST00000515351 FANCD2Q9BXW9 1451 aa22.41■■□□□ 1.18
PCDH1-208ENST00000515351 KANK4Q5T7N3 995 aaPredicted RBP22.41■■□□□ 1.18
PCDH1-208ENST00000515351 ZNF316A6NFI3 1004 aaPredicted RBP22.38■■□□□ 1.17
PCDH1-208ENST00000515351 CARMIL1Q5VZK9 1371 aa22.37■■□□□ 1.17
PCDH1-208ENST00000515351 RRBP1Q9P2E9 1410 aaKnown RBP22.36■■□□□ 1.17
PCDH1-208ENST00000515351 DNMBPQ6XZF7 1577 aa22.36■■□□□ 1.17
PCDH1-208ENST00000515351 SCAF1Q9H7N4 1312 aaKnown RBP22.32■■□□□ 1.16
PCDH1-208ENST00000515351 MAP3K1Q13233 1512 aa22.28■■□□□ 1.16
PCDH1-208ENST00000515351 TOPBP1Q92547 1522 aa22.28■■□□□ 1.16
PCDH1-208ENST00000515351 TIAM1Q13009 1591 aa22.27■■□□□ 1.16
PCDH1-208ENST00000515351 ABCA10Q8WWZ4 1543 aa22.27■■□□□ 1.16
PCDH1-208ENST00000515351 CLSPNQ9HAW4 1339 aa22.26■■□□□ 1.15
PCDH1-208ENST00000515351 POLA1P09884 1462 aaPredicted RBP22.25■■□□□ 1.15
PCDH1-208ENST00000515351 NESP48681 1621 aa22.25■■□□□ 1.15
PCDH1-208ENST00000515351 DHX57Q6P158 1386 aaKnown RBP22.24■■□□□ 1.15
PCDH1-208ENST00000515351 CCNB3Q8WWL7 1395 aa22.23■■□□□ 1.15
PCDH1-208ENST00000515351 RAD54L2Q9Y4B4 1467 aa22.22■■□□□ 1.15
PCDH1-208ENST00000515351 CUL7Q14999 1698 aa22.21■■□□□ 1.15
PCDH1-208ENST00000515351 ACIN1Q9UKV3 1341 aaKnown RBP22.2■■□□□ 1.14
PCDH1-208ENST00000515351 LAMC3Q9Y6N6 1575 aa22.2■■□□□ 1.14
PCDH1-208ENST00000515351 CFAP43Q8NDM7 1665 aa22.18■■□□□ 1.14
PCDH1-208ENST00000515351 WDR97A6NE52 1622 aa22.17■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 160.2 ms