RNA–Protein interactions for RNA: ENST00000513525.1

CCL28-203, Transcript of C-C motif chemokine ligand 28, humanhuman

TSL 1 (best) BASIC

Gene CCL28, Length 1,518 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCL28-203ENST00000513525 AEBP2Q6ZN18 517 aaPredicted RBP28.26■■■□□ 2.11
CCL28-203ENST00000513525 CHIC1Q5VXU3 224 aa26.63■■□□□ 1.85
CCL28-203ENST00000513525 NISCHQ9Y2I1 1504 aa24.51■■□□□ 1.51
CCL28-203ENST00000513525 SENP3Q9H4L4 574 aaPredicted RBP24.38■■□□□ 1.49
CCL28-203ENST00000513525 PHF23Q9BUL5 403 aaPredicted RBP23.9■■□□□ 1.42
CCL28-203ENST00000513525 FOXD1Q16676 465 aa22.65■■□□□ 1.22
CCL28-203ENST00000513525 CCDC180Q9P1Z9 1646 aa22.05■■□□□ 1.12
CCL28-203ENST00000513525 POTEDQ86YR6 584 aa21.72■■□□□ 1.07
CCL28-203ENST00000513525 ABCC9O60706 1549 aa21.69■■□□□ 1.06
CCL28-203ENST00000513525 MSH5O43196 834 aa21.55■■□□□ 1.04
CCL28-203ENST00000513525 PIAS4Q8N2W9 510 aaPredicted RBP21.13■□□□□ 0.97
CCL28-203ENST00000513525 PLPPR3Q6T4P5 718 aa21.02■□□□□ 0.96
CCL28-203ENST00000513525 RB1CC1Q8TDY2 1594 aa20.83■□□□□ 0.92
CCL28-203ENST00000513525 PPP6R1Q9UPN7 881 aa20.73■□□□□ 0.91
CCL28-203ENST00000513525 NACADO15069 1562 aa20.72■□□□□ 0.91
CCL28-203ENST00000513525 ADRA2BP18089 450 aa20.68■□□□□ 0.9
CCL28-203ENST00000513525 MYO15BQ96JP2 1530 aa20.52■□□□□ 0.87
CCL28-203ENST00000513525 UNC13AQ9UPW8 1703 aa20.48■□□□□ 0.87
CCL28-203ENST00000513525 DCAF8L2P0C7V8 631 aa20.42■□□□□ 0.86
CCL28-203ENST00000513525 ZCCHC6Q5VYS8 1495 aaKnown RBP20.36■□□□□ 0.85
CCL28-203ENST00000513525 DCAF1Q9Y4B6 1507 aa20.31■□□□□ 0.84
CCL28-203ENST00000513525 BICRAQ9NZM4 1560 aa20.21■□□□□ 0.83
CCL28-203ENST00000513525 DNAJC5BQ9UF47 199 aa20.14■□□□□ 0.81
CCL28-203ENST00000513525 PABPN1Q86U42 306 aaKnown RBP eCLIP20.13■□□□□ 0.81
CCL28-203ENST00000513525 SHROOM4Q9ULL8 1493 aa19.99■□□□□ 0.79
CCL28-203ENST00000513525 SCRIBQ14160 1630 aa19.97■□□□□ 0.79
CCL28-203ENST00000513525 CC2D2AQ9P2K1 1620 aa19.69■□□□□ 0.74
CCL28-203ENST00000513525 EIF4G1Q04637 1599 aaKnown RBP19.68■□□□□ 0.74
CCL28-203ENST00000513525 CECR2Q9BXF3 1484 aa19.53■□□□□ 0.72
CCL28-203ENST00000513525 DMRT2Q9Y5R5 561 aa19.2■□□□□ 0.66
CCL28-203ENST00000513525 SCAF1Q9H7N4 1312 aaKnown RBP19.14■□□□□ 0.65
CCL28-203ENST00000513525 SMARCA4P51532 1647 aa19.12■□□□□ 0.65
CCL28-203ENST00000513525 MAPK8IP2Q13387 824 aaPredicted RBP19.1■□□□□ 0.65
CCL28-203ENST00000513525 NCAPD3P42695 1498 aa19.08■□□□□ 0.64
CCL28-203ENST00000513525 SMARCA2P51531 1590 aa19.04■□□□□ 0.64
CCL28-203ENST00000513525 BAZ1AQ9NRL2 1556 aaPredicted RBP19.03■□□□□ 0.64
CCL28-203ENST00000513525 ATAD2BQ9ULI0 1458 aa19.03■□□□□ 0.64
CCL28-203ENST00000513525 HMGXB3Q12766 1538 aa19.01■□□□□ 0.63
CCL28-203ENST00000513525 PEG3Q9GZU2 1588 aa18.96■□□□□ 0.63
CCL28-203ENST00000513525 MROH2BQ7Z745 1585 aa18.86■□□□□ 0.61
CCL28-203ENST00000513525 BAZ1BQ9UIG0 1483 aaKnown RBP18.86■□□□□ 0.61
CCL28-203ENST00000513525 CACNB1Q02641 598 aaPredicted RBP18.74■□□□□ 0.59
CCL28-203ENST00000513525 ERCC6Q03468 1493 aa18.72■□□□□ 0.59
CCL28-203ENST00000513525 CUX2O14529 1486 aa18.7■□□□□ 0.58
CCL28-203ENST00000513525 WIZO95785 1651 aa18.69■□□□□ 0.58
CCL28-203ENST00000513525 NESP48681 1621 aa18.69■□□□□ 0.58
CCL28-203ENST00000513525 LAMC3Q9Y6N6 1575 aa18.69■□□□□ 0.58
CCL28-203ENST00000513525 KIF21AQ7Z4S6 1674 aa18.59■□□□□ 0.57
CCL28-203ENST00000513525 THOC2Q8NI27 1593 aaKnown RBP18.58■□□□□ 0.56
CCL28-203ENST00000513525 RSF1Q96T23 1441 aaPredicted RBP18.5■□□□□ 0.55
CCL28-203ENST00000513525 DCAF8L1A6NGE4 600 aa18.49■□□□□ 0.55
CCL28-203ENST00000513525 PDS5BQ9NTI5 1447 aa18.48■□□□□ 0.55
CCL28-203ENST00000513525 CADPSQ9ULU8 1353 aa18.47■□□□□ 0.55
CCL28-203ENST00000513525 TOP2AP11388 1531 aaKnown RBP18.46■□□□□ 0.55
CCL28-203ENST00000513525 DNAJC5Q9H3Z4 198 aa18.4■□□□□ 0.54
CCL28-203ENST00000513525 PRDM2Q13029 1718 aa18.37■□□□□ 0.53
CCL28-203ENST00000513525 MRC2Q9UBG0 1479 aa18.34■□□□□ 0.53
CCL28-203ENST00000513525 WDR62O43379 1518 aa18.33■□□□□ 0.52
CCL28-203ENST00000513525 CFTRP13569 1480 aa18.33■□□□□ 0.52
CCL28-203ENST00000513525 CEP164Q9UPV0 1460 aa18.31■□□□□ 0.52
CCL28-203ENST00000513525 HOXD11P31277 338 aaPredicted RBP18.3■□□□□ 0.52
CCL28-203ENST00000513525 PPP4R3CPQ6ZMV5 832 aa18.29■□□□□ 0.52
CCL28-203ENST00000513525 FANCD2Q9BXW9 1451 aa18.28■□□□□ 0.52
CCL28-203ENST00000513525 RNF39Q9H2S5 420 aa18.24■□□□□ 0.51
CCL28-203ENST00000513525 CCDC88BA6NC98 1476 aa18.19■□□□□ 0.5
CCL28-203ENST00000513525 URB2Q14146 1524 aaKnown RBP18.13■□□□□ 0.49
CCL28-203ENST00000513525 CNKSR2Q8WXI2 1034 aa18.12■□□□□ 0.49
CCL28-203ENST00000513525 RNF216Q9NWF9 866 aaPredicted RBP18.07■□□□□ 0.48
CCL28-203ENST00000513525 C1QBPQ07021 282 aaKnown RBP18.03■□□□□ 0.48
CCL28-203ENST00000513525 TOPBP1Q92547 1522 aa17.97■□□□□ 0.47
CCL28-203ENST00000513525 ABCC8Q09428 1581 aa17.97■□□□□ 0.47
CCL28-203ENST00000513525 DNMBPQ6XZF7 1577 aa17.96■□□□□ 0.46
CCL28-203ENST00000513525 IFT140Q96RY7 1462 aa17.92■□□□□ 0.46
CCL28-203ENST00000513525 TARBP1Q13395 1621 aaKnown RBP17.86■□□□□ 0.45
CCL28-203ENST00000513525 EIF4G3O43432 1585 aaKnown RBP17.85■□□□□ 0.45
CCL28-203ENST00000513525 ZNF608Q9ULD9 1512 aaPredicted RBP17.85■□□□□ 0.45
CCL28-203ENST00000513525 POLA1P09884 1462 aaPredicted RBP17.79■□□□□ 0.44
CCL28-203ENST00000513525 OSCARQ8IYS5 282 aa17.77■□□□□ 0.43
CCL28-203ENST00000513525 WDR97A6NE52 1622 aa17.74■□□□□ 0.43
CCL28-203ENST00000513525 CHD1O14646 1710 aa17.73■□□□□ 0.43
CCL28-203ENST00000513525 CUX1P39880 1505 aa17.72■□□□□ 0.43
CCL28-203ENST00000513525 FGD5Q6ZNL6 1462 aa17.7■□□□□ 0.42
CCL28-203ENST00000513525 SUPT5HO00267 1087 aaKnown RBP17.69■□□□□ 0.42
CCL28-203ENST00000513525 AQRO60306 1485 aaKnown RBP eCLIP17.68■□□□□ 0.42
CCL28-203ENST00000513525 RAD54L2Q9Y4B4 1467 aa17.68■□□□□ 0.42
CCL28-203ENST00000513525 SOGA1O94964 1423 aa17.67■□□□□ 0.42
CCL28-203ENST00000513525 RIMBP3CA6NJZ7 1639 aa17.64■□□□□ 0.41
CCL28-203ENST00000513525 RIMBP3BA6NNM3 1639 aa17.64■□□□□ 0.41
CCL28-203ENST00000513525 RIMBP3Q9UFD9 1639 aa17.64■□□□□ 0.41
CCL28-203ENST00000513525 PBRM1Q86U86 1689 aa17.6■□□□□ 0.41
CCL28-203ENST00000513525 TRIM41Q8WV44 630 aa17.6■□□□□ 0.41
CCL28-203ENST00000513525 TDRD9Q8NDG6 1382 aaKnown RBP17.58■□□□□ 0.4
CCL28-203ENST00000513525 NCBP3Q53F19 620 aaKnown RBP17.57■□□□□ 0.4
CCL28-203ENST00000513525 BIVM-ERCC5R4GMW8 1640 aa17.57■□□□□ 0.4
CCL28-203ENST00000513525 ARHGEF11O15085 1522 aa17.57■□□□□ 0.4
CCL28-203ENST00000513525 ABCA5Q8WWZ7 1642 aa17.55■□□□□ 0.4
CCL28-203ENST00000513525 SNAPC4Q5SXM2 1469 aa17.55■□□□□ 0.4
CCL28-203ENST00000513525 MAGI1Q96QZ7 1491 aaPredicted RBP17.55■□□□□ 0.4
CCL28-203ENST00000513525 TOP2BQ02880 1626 aa17.53■□□□□ 0.4
CCL28-203ENST00000513525 GRIN2BQ13224 1484 aa17.53■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 263.4 ms