RNA–Protein interactions for RNA: ENST00000511892.5

RNF4-217, Transcript of ring finger protein 4, humanhuman

TSL 4

Gene RNF4, Length 547 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-217ENST00000511892 AEBP2Q6ZN18 517 aaPredicted RBP16.83■□□□□ 0.28
RNF4-217ENST00000511892 CHIC1Q5VXU3 224 aa15.75■□□□□ 0.11
RNF4-217ENST00000511892 NISCHQ9Y2I1 1504 aa14.51□□□□□ -0.09
RNF4-217ENST00000511892 SENP3Q9H4L4 574 aaPredicted RBP14.3□□□□□ -0.12
RNF4-217ENST00000511892 PHF23Q9BUL5 403 aaPredicted RBP14.17□□□□□ -0.14
RNF4-217ENST00000511892 FOXD1Q16676 465 aa13.42□□□□□ -0.26
RNF4-217ENST00000511892 CCDC180Q9P1Z9 1646 aa13.01□□□□□ -0.33
RNF4-217ENST00000511892 ABCC9O60706 1549 aa12.83□□□□□ -0.35
RNF4-217ENST00000511892 POTEDQ86YR6 584 aa12.62□□□□□ -0.39
RNF4-217ENST00000511892 MSH5O43196 834 aa12.54□□□□□ -0.4
RNF4-217ENST00000511892 PIAS4Q8N2W9 510 aaPredicted RBP12.52□□□□□ -0.41
RNF4-217ENST00000511892 PLPPR3Q6T4P5 718 aa12.51□□□□□ -0.41
RNF4-217ENST00000511892 PPP6R1Q9UPN7 881 aa12.47□□□□□ -0.41
RNF4-217ENST00000511892 ADRA2BP18089 450 aa12.45□□□□□ -0.42
RNF4-217ENST00000511892 RB1CC1Q8TDY2 1594 aa12.28□□□□□ -0.44
RNF4-217ENST00000511892 NACADO15069 1562 aa12.23□□□□□ -0.45
RNF4-217ENST00000511892 DCAF8L2P0C7V8 631 aa12.13□□□□□ -0.47
RNF4-217ENST00000511892 UNC13AQ9UPW8 1703 aa12.12□□□□□ -0.47
RNF4-217ENST00000511892 MYO15BQ96JP2 1530 aa12.09□□□□□ -0.47
RNF4-217ENST00000511892 ZCCHC6Q5VYS8 1495 aaKnown RBP12.05□□□□□ -0.48
RNF4-217ENST00000511892 DCAF1Q9Y4B6 1507 aa12□□□□□ -0.49
RNF4-217ENST00000511892 BICRAQ9NZM4 1560 aa11.96□□□□□ -0.49
RNF4-217ENST00000511892 PABPN1Q86U42 306 aaKnown RBP eCLIP11.95□□□□□ -0.5
RNF4-217ENST00000511892 DNAJC5BQ9UF47 199 aa11.95□□□□□ -0.5
RNF4-217ENST00000511892 SCRIBQ14160 1630 aa11.84□□□□□ -0.51
RNF4-217ENST00000511892 SHROOM4Q9ULL8 1493 aa11.75□□□□□ -0.53
RNF4-217ENST00000511892 CC2D2AQ9P2K1 1620 aa11.64□□□□□ -0.55
RNF4-217ENST00000511892 EIF4G1Q04637 1599 aaKnown RBP11.63□□□□□ -0.55
RNF4-217ENST00000511892 CECR2Q9BXF3 1484 aa11.54□□□□□ -0.56
RNF4-217ENST00000511892 MAPK8IP2Q13387 824 aaPredicted RBP11.52□□□□□ -0.57
RNF4-217ENST00000511892 SMARCA4P51532 1647 aa11.31□□□□□ -0.6
RNF4-217ENST00000511892 DMRT2Q9Y5R5 561 aa11.31□□□□□ -0.6
RNF4-217ENST00000511892 NCAPD3P42695 1498 aa11.27□□□□□ -0.6
RNF4-217ENST00000511892 SCAF1Q9H7N4 1312 aaKnown RBP11.27□□□□□ -0.61
RNF4-217ENST00000511892 ATAD2BQ9ULI0 1458 aa11.26□□□□□ -0.61
RNF4-217ENST00000511892 BAZ1AQ9NRL2 1556 aaPredicted RBP11.24□□□□□ -0.61
RNF4-217ENST00000511892 SMARCA2P51531 1590 aa11.24□□□□□ -0.61
RNF4-217ENST00000511892 HMGXB3Q12766 1538 aa11.22□□□□□ -0.61
RNF4-217ENST00000511892 PEG3Q9GZU2 1588 aa11.2□□□□□ -0.62
RNF4-217ENST00000511892 MROH2BQ7Z745 1585 aa11.2□□□□□ -0.62
RNF4-217ENST00000511892 BAZ1BQ9UIG0 1483 aaKnown RBP11.14□□□□□ -0.63
RNF4-217ENST00000511892 WIZO95785 1651 aa11.11□□□□□ -0.63
RNF4-217ENST00000511892 NESP48681 1621 aa11.09□□□□□ -0.63
RNF4-217ENST00000511892 DCAF8L1A6NGE4 600 aa11.05□□□□□ -0.64
RNF4-217ENST00000511892 ERCC6Q03468 1493 aa11.05□□□□□ -0.64
RNF4-217ENST00000511892 LAMC3Q9Y6N6 1575 aa11.02□□□□□ -0.65
RNF4-217ENST00000511892 CUX2O14529 1486 aa11□□□□□ -0.65
RNF4-217ENST00000511892 PPP4R3CPQ6ZMV5 832 aa11□□□□□ -0.65
RNF4-217ENST00000511892 KIF21AQ7Z4S6 1674 aa10.99□□□□□ -0.65
RNF4-217ENST00000511892 CACNB1Q02641 598 aaPredicted RBP10.99□□□□□ -0.65
RNF4-217ENST00000511892 RSF1Q96T23 1441 aaPredicted RBP10.99□□□□□ -0.65
RNF4-217ENST00000511892 THOC2Q8NI27 1593 aaKnown RBP10.97□□□□□ -0.65
RNF4-217ENST00000511892 TOP2AP11388 1531 aaKnown RBP10.93□□□□□ -0.66
RNF4-217ENST00000511892 CADPSQ9ULU8 1353 aa10.92□□□□□ -0.66
RNF4-217ENST00000511892 PDS5BQ9NTI5 1447 aa10.92□□□□□ -0.66
RNF4-217ENST00000511892 PRDM2Q13029 1718 aa10.85□□□□□ -0.67
RNF4-217ENST00000511892 DNAJC5Q9H3Z4 198 aa10.85□□□□□ -0.67
RNF4-217ENST00000511892 CFTRP13569 1480 aa10.84□□□□□ -0.67
RNF4-217ENST00000511892 WDR62O43379 1518 aa10.83□□□□□ -0.68
RNF4-217ENST00000511892 MRC2Q9UBG0 1479 aa10.82□□□□□ -0.68
RNF4-217ENST00000511892 HOXD11P31277 338 aaPredicted RBP10.81□□□□□ -0.68
RNF4-217ENST00000511892 CCDC88BA6NC98 1476 aa10.81□□□□□ -0.68
RNF4-217ENST00000511892 FANCD2Q9BXW9 1451 aa10.81□□□□□ -0.68
RNF4-217ENST00000511892 CEP164Q9UPV0 1460 aa10.81□□□□□ -0.68
RNF4-217ENST00000511892 CNKSR2Q8WXI2 1034 aa10.77□□□□□ -0.69
RNF4-217ENST00000511892 URB2Q14146 1524 aaKnown RBP10.74□□□□□ -0.69
RNF4-217ENST00000511892 RNF39Q9H2S5 420 aa10.71□□□□□ -0.69
RNF4-217ENST00000511892 RNF216Q9NWF9 866 aaPredicted RBP10.69□□□□□ -0.7
RNF4-217ENST00000511892 TOPBP1Q92547 1522 aa10.63□□□□□ -0.71
RNF4-217ENST00000511892 DNMBPQ6XZF7 1577 aa10.61□□□□□ -0.71
RNF4-217ENST00000511892 ABCC8Q09428 1581 aa10.59□□□□□ -0.71
RNF4-217ENST00000511892 ZNF608Q9ULD9 1512 aaPredicted RBP10.58□□□□□ -0.72
RNF4-217ENST00000511892 IFT140Q96RY7 1462 aa10.58□□□□□ -0.72
RNF4-217ENST00000511892 TARBP1Q13395 1621 aaKnown RBP10.57□□□□□ -0.72
RNF4-217ENST00000511892 SUPT5HO00267 1087 aaKnown RBP10.56□□□□□ -0.72
RNF4-217ENST00000511892 EIF4G3O43432 1585 aaKnown RBP10.54□□□□□ -0.72
RNF4-217ENST00000511892 POLA1P09884 1462 aaPredicted RBP10.53□□□□□ -0.72
RNF4-217ENST00000511892 C1QBPQ07021 282 aaKnown RBP10.52□□□□□ -0.73
RNF4-217ENST00000511892 CUX1P39880 1505 aa10.51□□□□□ -0.73
RNF4-217ENST00000511892 AQRO60306 1485 aaKnown RBP eCLIP10.49□□□□□ -0.731e-7■■■■■ 35.4
RNF4-217ENST00000511892 RAD54L2Q9Y4B4 1467 aa10.49□□□□□ -0.73
RNF4-217ENST00000511892 OSCARQ8IYS5 282 aa10.49□□□□□ -0.73
RNF4-217ENST00000511892 CHD1O14646 1710 aa10.49□□□□□ -0.73
RNF4-217ENST00000511892 FGD5Q6ZNL6 1462 aa10.48□□□□□ -0.73
RNF4-217ENST00000511892 NCBP3Q53F19 620 aaKnown RBP10.47□□□□□ -0.73
RNF4-217ENST00000511892 SOGA1O94964 1423 aa10.47□□□□□ -0.73
RNF4-217ENST00000511892 WDR97A6NE52 1622 aa10.47□□□□□ -0.73
RNF4-217ENST00000511892 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.43□□□□□ -0.742e-10■■□□□ 13
RNF4-217ENST00000511892 TDRD9Q8NDG6 1382 aaKnown RBP10.42□□□□□ -0.74
RNF4-217ENST00000511892 RIMBP3CA6NJZ7 1639 aa10.42□□□□□ -0.74
RNF4-217ENST00000511892 RIMBP3BA6NNM3 1639 aa10.42□□□□□ -0.74
RNF4-217ENST00000511892 RIMBP3Q9UFD9 1639 aa10.42□□□□□ -0.74
RNF4-217ENST00000511892 PBRM1Q86U86 1689 aa10.41□□□□□ -0.74
RNF4-217ENST00000511892 TRIM41Q8WV44 630 aa10.4□□□□□ -0.74
RNF4-217ENST00000511892 BIVM-ERCC5R4GMW8 1640 aa10.4□□□□□ -0.75
RNF4-217ENST00000511892 SYNJ1O43426 1573 aa10.39□□□□□ -0.75
RNF4-217ENST00000511892 SNAPC4Q5SXM2 1469 aa10.38□□□□□ -0.75
RNF4-217ENST00000511892 TOP2BQ02880 1626 aa10.38□□□□□ -0.75
RNF4-217ENST00000511892 ABCA5Q8WWZ7 1642 aa10.38□□□□□ -0.75
RNF4-217ENST00000511892 ARHGEF11O15085 1522 aa10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms