RNA–Protein interactions for RNA: ENST00000511313.5

POLR2J3-215, Transcript of RNA polymerase II subunit J3, humanhuman

TSL 1 (best) BASIC

Gene POLR2J3, Length 4,630 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
POLR2J3-215ENST00000511313 NISCHQ9Y2I1 1504 aa19.58■□□□□ 0.72
POLR2J3-215ENST00000511313 DCAF8L2P0C7V8 631 aa18.02■□□□□ 0.47
POLR2J3-215ENST00000511313 CCDC180Q9P1Z9 1646 aa17.24■□□□□ 0.35
POLR2J3-215ENST00000511313 ABCC9O60706 1549 aa17.12■□□□□ 0.33
POLR2J3-215ENST00000511313 RB1CC1Q8TDY2 1594 aa16.74■□□□□ 0.27
POLR2J3-215ENST00000511313 NACADO15069 1562 aa16.63■□□□□ 0.25
POLR2J3-215ENST00000511313 FAM9AQ8IZU1 332 aaPredicted RBP16.62■□□□□ 0.25
POLR2J3-215ENST00000511313 MYO15BQ96JP2 1530 aa16.31■□□□□ 0.2
POLR2J3-215ENST00000511313 DCAF1Q9Y4B6 1507 aa16.24■□□□□ 0.19
POLR2J3-215ENST00000511313 PABPN1Q86U42 306 aaKnown RBP eCLIP16.24■□□□□ 0.19
POLR2J3-215ENST00000511313 SHROOM4Q9ULL8 1493 aa16.2■□□□□ 0.18
POLR2J3-215ENST00000511313 ZCCHC6Q5VYS8 1495 aaKnown RBP16.19■□□□□ 0.18
POLR2J3-215ENST00000511313 SCRIBQ14160 1630 aa15.99■□□□□ 0.15
POLR2J3-215ENST00000511313 SUPT5HO00267 1087 aaKnown RBP15.96■□□□□ 0.15
POLR2J3-215ENST00000511313 SMARCA2P51531 1590 aa15.6■□□□□ 0.09
POLR2J3-215ENST00000511313 ERCC6Q03468 1493 aa15.59■□□□□ 0.09
POLR2J3-215ENST00000511313 BAZ1AQ9NRL2 1556 aaPredicted RBP15.56■□□□□ 0.08
POLR2J3-215ENST00000511313 BAZ1BQ9UIG0 1483 aaKnown RBP15.54■□□□□ 0.08
POLR2J3-215ENST00000511313 CECR2Q9BXF3 1484 aa15.53■□□□□ 0.08
POLR2J3-215ENST00000511313 APLP2Q06481 763 aa15.51■□□□□ 0.07
POLR2J3-215ENST00000511313 PDS5BQ9NTI5 1447 aa15.48■□□□□ 0.07
POLR2J3-215ENST00000511313 TRIM41Q8WV44 630 aa15.37■□□□□ 0.05
POLR2J3-215ENST00000511313 NPM1P06748 294 aaKnown RBP eCLIP15.31■□□□□ 0.04
POLR2J3-215ENST00000511313 ABCC8Q09428 1581 aa15.21■□□□□ 0.03
POLR2J3-215ENST00000511313 EIF4G1Q04637 1599 aaKnown RBP15.2■□□□□ 0.02
POLR2J3-215ENST00000511313 FBLN2P98095 1184 aa15.19■□□□□ 0.02
POLR2J3-215ENST00000511313 NCAPD3P42695 1498 aa15.19■□□□□ 0.02
POLR2J3-215ENST00000511313 ATAD2BQ9ULI0 1458 aa15.11■□□□□ 0.01
POLR2J3-215ENST00000511313 CHMP7Q8WUX9 453 aaPredicted RBP15.11■□□□□ 0.01
POLR2J3-215ENST00000511313 CADPSQ9ULU8 1353 aa15.11■□□□□ 0.01
POLR2J3-215ENST00000511313 UBTFP17480 764 aaKnown RBP15.08■□□□□ 0
POLR2J3-215ENST00000511313 HMGXB3Q12766 1538 aa15.04■□□□□ -0
POLR2J3-215ENST00000511313 CEP164Q9UPV0 1460 aa15.02■□□□□ -0
POLR2J3-215ENST00000511313 CC2D2AQ9P2K1 1620 aa15.02■□□□□ -0
POLR2J3-215ENST00000511313 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.02■□□□□ -0
POLR2J3-215ENST00000511313 HNRNPUL2Q1KMD3 747 aaKnown RBP15.02■□□□□ -0
POLR2J3-215ENST00000511313 SMARCA4P51532 1647 aa15.02□□□□□ -0.01
POLR2J3-215ENST00000511313 CDK11AQ9UQ88 783 aaPredicted RBP15□□□□□ -0.01
POLR2J3-215ENST00000511313 RSF1Q96T23 1441 aaPredicted RBP15□□□□□ -0.01
POLR2J3-215ENST00000511313 ATP1B4Q9UN42 357 aaPredicted RBP14.97□□□□□ -0.01
POLR2J3-215ENST00000511313 MYT1LQ9UL68 1186 aa14.94□□□□□ -0.02
POLR2J3-215ENST00000511313 TOP2AP11388 1531 aaKnown RBP14.92□□□□□ -0.02
POLR2J3-215ENST00000511313 OSCARQ8IYS5 282 aa14.88□□□□□ -0.03
POLR2J3-215ENST00000511313 BICRAQ9NZM4 1560 aa14.88□□□□□ -0.03
POLR2J3-215ENST00000511313 WRNQ14191 1432 aaPredicted RBP eCLIP14.87□□□□□ -0.031e-6■■■■■ 58.5
POLR2J3-215ENST00000511313 LAMC3Q9Y6N6 1575 aa14.83□□□□□ -0.03
POLR2J3-215ENST00000511313 EEA1Q15075 1411 aa14.83□□□□□ -0.04
POLR2J3-215ENST00000511313 MRC2Q9UBG0 1479 aa14.82□□□□□ -0.04
POLR2J3-215ENST00000511313 CUX2O14529 1486 aa14.81□□□□□ -0.04
POLR2J3-215ENST00000511313 KIF27Q86VH2 1401 aa14.81□□□□□ -0.04
POLR2J3-215ENST00000511313 FANCD2Q9BXW9 1451 aa14.8□□□□□ -0.04
POLR2J3-215ENST00000511313 MROH2BQ7Z745 1585 aa14.78□□□□□ -0.04
POLR2J3-215ENST00000511313 ESF1Q9H501 851 aaKnown RBP14.76□□□□□ -0.05
POLR2J3-215ENST00000511313 CARMIL2Q6F5E8 1435 aa14.74□□□□□ -0.05
POLR2J3-215ENST00000511313 TTBK1Q5TCY1 1321 aaPredicted RBP14.72□□□□□ -0.05
POLR2J3-215ENST00000511313 SOGA1O94964 1423 aa14.72□□□□□ -0.05
POLR2J3-215ENST00000511313 IFT140Q96RY7 1462 aa14.71□□□□□ -0.05
POLR2J3-215ENST00000511313 CSRNP3Q8WYN3 585 aa14.68□□□□□ -0.06
POLR2J3-215ENST00000511313 DNAJC5BQ9UF47 199 aa14.67□□□□□ -0.06
POLR2J3-215ENST00000511313 RANGAP1P46060 587 aaPredicted RBP14.66□□□□□ -0.06
POLR2J3-215ENST00000511313 TRHP20396 242 aaPredicted RBP14.65□□□□□ -0.06
POLR2J3-215ENST00000511313 CCDC88BA6NC98 1476 aa14.63□□□□□ -0.07
POLR2J3-215ENST00000511313 ACIN1Q9UKV3 1341 aaKnown RBP14.62□□□□□ -0.07
POLR2J3-215ENST00000511313 PEG3Q9GZU2 1588 aa14.61□□□□□ -0.07
POLR2J3-215ENST00000511313 CFTRP13569 1480 aa14.61□□□□□ -0.07
POLR2J3-215ENST00000511313 UNC13AQ9UPW8 1703 aa14.58□□□□□ -0.08
POLR2J3-215ENST00000511313 EHMT2Q96KQ7 1210 aa14.54□□□□□ -0.08
POLR2J3-215ENST00000511313 PLEKHD1A6NEE1 506 aa14.53□□□□□ -0.08
POLR2J3-215ENST00000511313 GOLGA3Q08378 1498 aa14.51□□□□□ -0.09
POLR2J3-215ENST00000511313 GRIN2BQ13224 1484 aa14.5□□□□□ -0.09
POLR2J3-215ENST00000511313 WIZO95785 1651 aa14.47□□□□□ -0.09
POLR2J3-215ENST00000511313 CARMIL1Q5VZK9 1371 aa14.46□□□□□ -0.1
POLR2J3-215ENST00000511313 AEBP2Q6ZN18 517 aaPredicted RBP14.42□□□□□ -0.1
POLR2J3-215ENST00000511313 DNMBPQ6XZF7 1577 aa14.41□□□□□ -0.1
POLR2J3-215ENST00000511313 GAPVD1Q14C86 1478 aa14.41□□□□□ -0.1
POLR2J3-215ENST00000511313 CHIC1Q5VXU3 224 aa14.4□□□□□ -0.1
POLR2J3-215ENST00000511313 TDRD9Q8NDG6 1382 aaKnown RBP14.39□□□□□ -0.11
POLR2J3-215ENST00000511313 FHAD1B1AJZ9 1412 aa14.39□□□□□ -0.11
POLR2J3-215ENST00000511313 CLIP1P30622 1438 aa14.38□□□□□ -0.11
POLR2J3-215ENST00000511313 MAGI1Q96QZ7 1491 aaPredicted RBP14.34□□□□□ -0.11
POLR2J3-215ENST00000511313 JPH4Q96JJ6 628 aa14.33□□□□□ -0.12
POLR2J3-215ENST00000511313 TOPBP1Q92547 1522 aa14.32□□□□□ -0.12
POLR2J3-215ENST00000511313 FGD5Q6ZNL6 1462 aa14.31□□□□□ -0.12
POLR2J3-215ENST00000511313 TSPY4P0CV99 314 aa14.3□□□□□ -0.12
POLR2J3-215ENST00000511313 TSPY10P0CW01 314 aa14.3□□□□□ -0.12
POLR2J3-215ENST00000511313 WDR97A6NE52 1622 aa14.3□□□□□ -0.12
POLR2J3-215ENST00000511313 CYB5RLQ6IPT4 315 aa14.3□□□□□ -0.12
POLR2J3-215ENST00000511313 SYNJ1O43426 1573 aa14.3□□□□□ -0.12
POLR2J3-215ENST00000511313 NESP48681 1621 aa14.29□□□□□ -0.12
POLR2J3-215ENST00000511313 PTPRGP23470 1445 aa14.28□□□□□ -0.12
POLR2J3-215ENST00000511313 RAPGEF2Q9Y4G8 1499 aa14.27□□□□□ -0.13
POLR2J3-215ENST00000511313 ARID4BQ4LE39 1312 aaPredicted RBP14.26□□□□□ -0.13
POLR2J3-215ENST00000511313 MTUS2Q5JR59 1369 aa14.23□□□□□ -0.13
POLR2J3-215ENST00000511313 FMN1Q68DA7 1419 aa14.23□□□□□ -0.13
POLR2J3-215ENST00000511313 HDGFP51858 240 aaKnown RBP14.22□□□□□ -0.13
POLR2J3-215ENST00000511313 SYNJ2O15056 1496 aa14.21□□□□□ -0.13
POLR2J3-215ENST00000511313 STAG3Q9UJ98 1225 aa14.21□□□□□ -0.13
POLR2J3-215ENST00000511313 TNIKQ9UKE5 1360 aa14.21□□□□□ -0.14
POLR2J3-215ENST00000511313 P3H3Q8IVL6 736 aa14.21□□□□□ -0.14
POLR2J3-215ENST00000511313 EFCAB2Q5VUJ9 269 aa14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms