RNA–Protein interactions for RNA: ENST00000510108.1

NEK1-205, Transcript of NIMA related kinase 1, humanhuman

TSL 5

Gene NEK1, Length 1,304 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK1-205ENST00000510108 AEBP2Q6ZN18 517 aaPredicted RBP26.15■■□□□ 1.78
NEK1-205ENST00000510108 CHIC1Q5VXU3 224 aa25.53■■□□□ 1.68
NEK1-205ENST00000510108 NISCHQ9Y2I1 1504 aa23.78■■□□□ 1.4
NEK1-205ENST00000510108 PHF23Q9BUL5 403 aaPredicted RBP22.46■■□□□ 1.19
NEK1-205ENST00000510108 SENP3Q9H4L4 574 aaPredicted RBP22.18■■□□□ 1.14
NEK1-205ENST00000510108 CCDC180Q9P1Z9 1646 aa20.95■□□□□ 0.94
NEK1-205ENST00000510108 PLPPR3Q6T4P5 718 aa20.73■□□□□ 0.91
NEK1-205ENST00000510108 FOXD1Q16676 465 aa20.59■□□□□ 0.89
NEK1-205ENST00000510108 ZCCHC6Q5VYS8 1495 aaKnown RBP19.98■□□□□ 0.79
NEK1-205ENST00000510108 PPP6R1Q9UPN7 881 aa19.81■□□□□ 0.76
NEK1-205ENST00000510108 ADRA2BP18089 450 aa19.79■□□□□ 0.76
NEK1-205ENST00000510108 DCAF1Q9Y4B6 1507 aa19.78■□□□□ 0.76
NEK1-205ENST00000510108 ABCC9O60706 1549 aa19.75■□□□□ 0.75
NEK1-205ENST00000510108 MYO15BQ96JP2 1530 aa19.65■□□□□ 0.74
NEK1-205ENST00000510108 NACADO15069 1562 aa19.5■□□□□ 0.71
NEK1-205ENST00000510108 PIAS4Q8N2W9 510 aaPredicted RBP19.42■□□□□ 0.7
NEK1-205ENST00000510108 DCAF8L2P0C7V8 631 aa19.36■□□□□ 0.69
NEK1-205ENST00000510108 RB1CC1Q8TDY2 1594 aa19.35■□□□□ 0.69
NEK1-205ENST00000510108 SCRIBQ14160 1630 aa19.06■□□□□ 0.64
NEK1-205ENST00000510108 SHROOM4Q9ULL8 1493 aa19■□□□□ 0.63
NEK1-205ENST00000510108 MSH5O43196 834 aa18.99■□□□□ 0.63
NEK1-205ENST00000510108 UNC13AQ9UPW8 1703 aa18.97■□□□□ 0.63
NEK1-205ENST00000510108 BICRAQ9NZM4 1560 aa18.77■□□□□ 0.6
NEK1-205ENST00000510108 PABPN1Q86U42 306 aaKnown RBP eCLIP18.48■□□□□ 0.55
NEK1-205ENST00000510108 CECR2Q9BXF3 1484 aa18.41■□□□□ 0.54
NEK1-205ENST00000510108 BAZ1AQ9NRL2 1556 aaPredicted RBP18.4■□□□□ 0.54
NEK1-205ENST00000510108 SMARCA4P51532 1647 aa18.34■□□□□ 0.53
NEK1-205ENST00000510108 RSF1Q96T23 1441 aaPredicted RBP18.32■□□□□ 0.52
NEK1-205ENST00000510108 MROH2BQ7Z745 1585 aa18.31■□□□□ 0.52
NEK1-205ENST00000510108 PPP4R3CPQ6ZMV5 832 aa18.26■□□□□ 0.51
NEK1-205ENST00000510108 EIF4G1Q04637 1599 aaKnown RBP18.2■□□□□ 0.5
NEK1-205ENST00000510108 PEG3Q9GZU2 1588 aa18.2■□□□□ 0.5
NEK1-205ENST00000510108 WIZO95785 1651 aa18.16■□□□□ 0.5
NEK1-205ENST00000510108 SUPT5HO00267 1087 aaKnown RBP18.15■□□□□ 0.5
NEK1-205ENST00000510108 SCAF1Q9H7N4 1312 aaKnown RBP18.09■□□□□ 0.49
NEK1-205ENST00000510108 SMARCA2P51531 1590 aa18.08■□□□□ 0.48
NEK1-205ENST00000510108 ATAD2BQ9ULI0 1458 aa18.05■□□□□ 0.48
NEK1-205ENST00000510108 TOP2AP11388 1531 aaKnown RBP18.04■□□□□ 0.48
NEK1-205ENST00000510108 HMGXB3Q12766 1538 aa17.98■□□□□ 0.47
NEK1-205ENST00000510108 MAPK8IP2Q13387 824 aaPredicted RBP17.97■□□□□ 0.47
NEK1-205ENST00000510108 NCAPD3P42695 1498 aa17.96■□□□□ 0.47
NEK1-205ENST00000510108 CC2D2AQ9P2K1 1620 aa17.95■□□□□ 0.46
NEK1-205ENST00000510108 BAZ1BQ9UIG0 1483 aaKnown RBP17.92■□□□□ 0.46
NEK1-205ENST00000510108 KCNA4P22459 653 aa17.85■□□□□ 0.45
NEK1-205ENST00000510108 NCBP3Q53F19 620 aaKnown RBP17.77■□□□□ 0.44
NEK1-205ENST00000510108 CCDC88BA6NC98 1476 aa17.77■□□□□ 0.43
NEK1-205ENST00000510108 CNKSR2Q8WXI2 1034 aa17.75■□□□□ 0.43
NEK1-205ENST00000510108 DNAJC5BQ9UF47 199 aa17.74■□□□□ 0.43
NEK1-205ENST00000510108 DMRT2Q9Y5R5 561 aa17.71■□□□□ 0.42
NEK1-205ENST00000510108 NPM3O75607 178 aaKnown RBP17.53■□□□□ 0.4
NEK1-205ENST00000510108 PRDM2Q13029 1718 aa17.5■□□□□ 0.39
NEK1-205ENST00000510108 CFTRP13569 1480 aa17.5■□□□□ 0.39
NEK1-205ENST00000510108 CADPSQ9ULU8 1353 aa17.43■□□□□ 0.38
NEK1-205ENST00000510108 RNF216Q9NWF9 866 aaPredicted RBP17.42■□□□□ 0.38
NEK1-205ENST00000510108 LAMC3Q9Y6N6 1575 aa17.41■□□□□ 0.38
NEK1-205ENST00000510108 HOXD11P31277 338 aaPredicted RBP17.35■□□□□ 0.37
NEK1-205ENST00000510108 POTEDQ86YR6 584 aa17.3■□□□□ 0.36
NEK1-205ENST00000510108 ABCC8Q09428 1581 aa17.3■□□□□ 0.36
NEK1-205ENST00000510108 NESP48681 1621 aa17.29■□□□□ 0.36
NEK1-205ENST00000510108 WRNQ14191 1432 aaPredicted RBP eCLIP17.25■□□□□ 0.35
NEK1-205ENST00000510108 FANCD2Q9BXW9 1451 aa17.23■□□□□ 0.35
NEK1-205ENST00000510108 BIVM-ERCC5R4GMW8 1640 aa17.23■□□□□ 0.35
NEK1-205ENST00000510108 SYNJ1O43426 1573 aa17.22■□□□□ 0.35
NEK1-205ENST00000510108 TOP2BQ02880 1626 aa17.21■□□□□ 0.35
NEK1-205ENST00000510108 PDS5BQ9NTI5 1447 aa17.2■□□□□ 0.34
NEK1-205ENST00000510108 KIF21AQ7Z4S6 1674 aa17.17■□□□□ 0.34
NEK1-205ENST00000510108 CUX1P39880 1505 aa17.16■□□□□ 0.34
NEK1-205ENST00000510108 CEP164Q9UPV0 1460 aa17.16■□□□□ 0.34
NEK1-205ENST00000510108 TRIM41Q8WV44 630 aa17.15■□□□□ 0.34
NEK1-205ENST00000510108 ERCC6Q03468 1493 aa17.12■□□□□ 0.33
NEK1-205ENST00000510108 DNMBPQ6XZF7 1577 aa17.11■□□□□ 0.33
NEK1-205ENST00000510108 TOPBP1Q92547 1522 aa17.06■□□□□ 0.32
NEK1-205ENST00000510108 URB2Q14146 1524 aaKnown RBP17.05■□□□□ 0.32
NEK1-205ENST00000510108 MRC2Q9UBG0 1479 aa17.03■□□□□ 0.32
NEK1-205ENST00000510108 WDR62O43379 1518 aa17■□□□□ 0.31
NEK1-205ENST00000510108 THOC2Q8NI27 1593 aaKnown RBP17■□□□□ 0.31
NEK1-205ENST00000510108 FGD5Q6ZNL6 1462 aa16.99■□□□□ 0.31
NEK1-205ENST00000510108 SLC4A1APQ9BWU0 796 aaKnown RBP16.98■□□□□ 0.31
NEK1-205ENST00000510108 EEA1Q15075 1411 aa16.96■□□□□ 0.31
NEK1-205ENST00000510108 POLA1P09884 1462 aaPredicted RBP16.94■□□□□ 0.3
NEK1-205ENST00000510108 DCAF8L1A6NGE4 600 aa16.94■□□□□ 0.3
NEK1-205ENST00000510108 WDR97A6NE52 1622 aa16.92■□□□□ 0.3
NEK1-205ENST00000510108 SOGA1O94964 1423 aa16.91■□□□□ 0.3
NEK1-205ENST00000510108 ABCA10Q8WWZ4 1543 aa16.89■□□□□ 0.29
NEK1-205ENST00000510108 TARBP1Q13395 1621 aaKnown RBP16.86■□□□□ 0.29
NEK1-205ENST00000510108 RUSC2Q8N2Y8 1516 aa16.85■□□□□ 0.29
NEK1-205ENST00000510108 CUX2O14529 1486 aa16.83■□□□□ 0.28
NEK1-205ENST00000510108 KIF27Q86VH2 1401 aa16.82■□□□□ 0.28
NEK1-205ENST00000510108 RAD54L2Q9Y4B4 1467 aa16.82■□□□□ 0.28
NEK1-205ENST00000510108 ABCA5Q8WWZ7 1642 aa16.8■□□□□ 0.28
NEK1-205ENST00000510108 IFT140Q96RY7 1462 aa16.79■□□□□ 0.28
NEK1-205ENST00000510108 KIF21BO75037 1637 aa16.78■□□□□ 0.28
NEK1-205ENST00000510108 CSRNP3Q8WYN3 585 aa16.73■□□□□ 0.27
NEK1-205ENST00000510108 FAM9AQ8IZU1 332 aaPredicted RBP16.71■□□□□ 0.27
NEK1-205ENST00000510108 PRXQ9BXM0 1461 aa16.71■□□□□ 0.27
NEK1-205ENST00000510108 ERICH3Q5RHP9 1530 aa16.7■□□□□ 0.26
NEK1-205ENST00000510108 CUL7Q14999 1698 aa16.69■□□□□ 0.26
NEK1-205ENST00000510108 PBRM1Q86U86 1689 aa16.68■□□□□ 0.26
NEK1-205ENST00000510108 GAPVD1Q14C86 1478 aa16.68■□□□□ 0.26
NEK1-205ENST00000510108 GOLGA3Q08378 1498 aa16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 106.5 ms