RNA–Protein interactions for RNA: ENST00000509084.1

RFC1-211, Transcript of replication factor C subunit 1, humanhuman

TSL 3

Gene RFC1, Length 483 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC1-211ENST00000509084 NISCHQ9Y2I1 1504 aa24.23■■□□□ 1.47
RFC1-211ENST00000509084 AEBP2Q6ZN18 517 aaPredicted RBP23.77■■□□□ 1.4
RFC1-211ENST00000509084 CHIC1Q5VXU3 224 aa22.98■■□□□ 1.27
RFC1-211ENST00000509084 CCDC180Q9P1Z9 1646 aa21.38■■□□□ 1.01
RFC1-211ENST00000509084 SENP3Q9H4L4 574 aaPredicted RBP20.35■□□□□ 0.85
RFC1-211ENST00000509084 ABCC9O60706 1549 aa20.32■□□□□ 0.84
RFC1-211ENST00000509084 ZCCHC6Q5VYS8 1495 aaKnown RBP20.31■□□□□ 0.84
RFC1-211ENST00000509084 DCAF1Q9Y4B6 1507 aa20.13■□□□□ 0.81
RFC1-211ENST00000509084 PHF23Q9BUL5 403 aaPredicted RBP20.11■□□□□ 0.81
RFC1-211ENST00000509084 MYO15BQ96JP2 1530 aa20.04■□□□□ 0.8
RFC1-211ENST00000509084 NACADO15069 1562 aa19.96■□□□□ 0.79
RFC1-211ENST00000509084 DCAF8L2P0C7V8 631 aa19.94■□□□□ 0.78
RFC1-211ENST00000509084 RB1CC1Q8TDY2 1594 aa19.86■□□□□ 0.77
RFC1-211ENST00000509084 SCRIBQ14160 1630 aa19.47■□□□□ 0.71
RFC1-211ENST00000509084 SHROOM4Q9ULL8 1493 aa19.36■□□□□ 0.69
RFC1-211ENST00000509084 UNC13AQ9UPW8 1703 aa19.36■□□□□ 0.69
RFC1-211ENST00000509084 BICRAQ9NZM4 1560 aa19.17■□□□□ 0.66
RFC1-211ENST00000509084 PABPN1Q86U42 306 aaKnown RBP eCLIP19.02■□□□□ 0.64
RFC1-211ENST00000509084 FOXD1Q16676 465 aa18.84■□□□□ 0.61
RFC1-211ENST00000509084 BAZ1AQ9NRL2 1556 aaPredicted RBP18.79■□□□□ 0.6
RFC1-211ENST00000509084 CECR2Q9BXF3 1484 aa18.75■□□□□ 0.59
RFC1-211ENST00000509084 SMARCA4P51532 1647 aa18.71■□□□□ 0.58
RFC1-211ENST00000509084 EIF4G1Q04637 1599 aaKnown RBP18.66■□□□□ 0.58
RFC1-211ENST00000509084 MROH2BQ7Z745 1585 aa18.65■□□□□ 0.58
RFC1-211ENST00000509084 RSF1Q96T23 1441 aaPredicted RBP18.63■□□□□ 0.57
RFC1-211ENST00000509084 PLPPR3Q6T4P5 718 aa18.58■□□□□ 0.56
RFC1-211ENST00000509084 PEG3Q9GZU2 1588 aa18.54■□□□□ 0.56
RFC1-211ENST00000509084 SMARCA2P51531 1590 aa18.51■□□□□ 0.55
RFC1-211ENST00000509084 SUPT5HO00267 1087 aaKnown RBP18.48■□□□□ 0.55
RFC1-211ENST00000509084 WIZO95785 1651 aa18.47■□□□□ 0.55
RFC1-211ENST00000509084 ATAD2BQ9ULI0 1458 aa18.46■□□□□ 0.54
RFC1-211ENST00000509084 CC2D2AQ9P2K1 1620 aa18.43■□□□□ 0.54
RFC1-211ENST00000509084 NCAPD3P42695 1498 aa18.38■□□□□ 0.53
RFC1-211ENST00000509084 HMGXB3Q12766 1538 aa18.38■□□□□ 0.53
RFC1-211ENST00000509084 TOP2AP11388 1531 aaKnown RBP18.37■□□□□ 0.53
RFC1-211ENST00000509084 BAZ1BQ9UIG0 1483 aaKnown RBP18.35■□□□□ 0.53
RFC1-211ENST00000509084 CCDC88BA6NC98 1476 aa18.09■□□□□ 0.49
RFC1-211ENST00000509084 DNAJC5BQ9UF47 199 aa18.08■□□□□ 0.48
RFC1-211ENST00000509084 CFTRP13569 1480 aa17.87■□□□□ 0.45
RFC1-211ENST00000509084 CADPSQ9ULU8 1353 aa17.86■□□□□ 0.45
RFC1-211ENST00000509084 LAMC3Q9Y6N6 1575 aa17.86■□□□□ 0.45
RFC1-211ENST00000509084 ADRA2BP18089 450 aa17.85■□□□□ 0.45
RFC1-211ENST00000509084 PPP6R1Q9UPN7 881 aa17.84■□□□□ 0.45
RFC1-211ENST00000509084 PRDM2Q13029 1718 aa17.84■□□□□ 0.45
RFC1-211ENST00000509084 PIAS4Q8N2W9 510 aaPredicted RBP17.77■□□□□ 0.44
RFC1-211ENST00000509084 NESP48681 1621 aa17.72■□□□□ 0.43
RFC1-211ENST00000509084 PDS5BQ9NTI5 1447 aa17.7■□□□□ 0.42
RFC1-211ENST00000509084 FANCD2Q9BXW9 1451 aa17.66■□□□□ 0.42
RFC1-211ENST00000509084 CEP164Q9UPV0 1460 aa17.62■□□□□ 0.41
RFC1-211ENST00000509084 MSH5O43196 834 aa17.6■□□□□ 0.41
RFC1-211ENST00000509084 ABCC8Q09428 1581 aa17.58■□□□□ 0.41
RFC1-211ENST00000509084 WRNQ14191 1432 aaPredicted RBP eCLIP17.58■□□□□ 0.41
RFC1-211ENST00000509084 KIF21AQ7Z4S6 1674 aa17.57■□□□□ 0.4
RFC1-211ENST00000509084 ERCC6Q03468 1493 aa17.52■□□□□ 0.4
RFC1-211ENST00000509084 BIVM-ERCC5R4GMW8 1640 aa17.5■□□□□ 0.39
RFC1-211ENST00000509084 TOP2BQ02880 1626 aa17.5■□□□□ 0.39
RFC1-211ENST00000509084 SYNJ1O43426 1573 aa17.49■□□□□ 0.39
RFC1-211ENST00000509084 DNMBPQ6XZF7 1577 aa17.49■□□□□ 0.39
RFC1-211ENST00000509084 TRIM41Q8WV44 630 aa17.48■□□□□ 0.39
RFC1-211ENST00000509084 MRC2Q9UBG0 1479 aa17.48■□□□□ 0.39
RFC1-211ENST00000509084 CUX1P39880 1505 aa17.47■□□□□ 0.39
RFC1-211ENST00000509084 URB2Q14146 1524 aaKnown RBP17.43■□□□□ 0.38
RFC1-211ENST00000509084 TOPBP1Q92547 1522 aa17.43■□□□□ 0.38
RFC1-211ENST00000509084 THOC2Q8NI27 1593 aaKnown RBP17.4■□□□□ 0.38
RFC1-211ENST00000509084 WDR62O43379 1518 aa17.4■□□□□ 0.38
RFC1-211ENST00000509084 FGD5Q6ZNL6 1462 aa17.36■□□□□ 0.37
RFC1-211ENST00000509084 POLA1P09884 1462 aaPredicted RBP17.31■□□□□ 0.36
RFC1-211ENST00000509084 EEA1Q15075 1411 aa17.25■□□□□ 0.35
RFC1-211ENST00000509084 SOGA1O94964 1423 aa17.24■□□□□ 0.35
RFC1-211ENST00000509084 IFT140Q96RY7 1462 aa17.23■□□□□ 0.35
RFC1-211ENST00000509084 ABCA10Q8WWZ4 1543 aa17.22■□□□□ 0.35
RFC1-211ENST00000509084 WDR97A6NE52 1622 aa17.21■□□□□ 0.35
RFC1-211ENST00000509084 CUX2O14529 1486 aa17.2■□□□□ 0.34
RFC1-211ENST00000509084 TARBP1Q13395 1621 aaKnown RBP17.2■□□□□ 0.34
RFC1-211ENST00000509084 KIF27Q86VH2 1401 aa17.2■□□□□ 0.34
RFC1-211ENST00000509084 RAD54L2Q9Y4B4 1467 aa17.19■□□□□ 0.34
RFC1-211ENST00000509084 ABCA5Q8WWZ7 1642 aa17.11■□□□□ 0.33
RFC1-211ENST00000509084 RUSC2Q8N2Y8 1516 aa17.09■□□□□ 0.33
RFC1-211ENST00000509084 GAPVD1Q14C86 1478 aa17.07■□□□□ 0.32
RFC1-211ENST00000509084 ERICH3Q5RHP9 1530 aa17.06■□□□□ 0.32
RFC1-211ENST00000509084 FAM9AQ8IZU1 332 aaPredicted RBP17.05■□□□□ 0.32
RFC1-211ENST00000509084 CSRNP3Q8WYN3 585 aa17.05■□□□□ 0.32
RFC1-211ENST00000509084 EIF4G3O43432 1585 aaKnown RBP17.05■□□□□ 0.32
RFC1-211ENST00000509084 TDRD9Q8NDG6 1382 aaKnown RBP17.04■□□□□ 0.32
RFC1-211ENST00000509084 ZNF608Q9ULD9 1512 aaPredicted RBP17.03■□□□□ 0.32
RFC1-211ENST00000509084 PBRM1Q86U86 1689 aa17.03■□□□□ 0.32
RFC1-211ENST00000509084 CUL7Q14999 1698 aa17.02■□□□□ 0.32
RFC1-211ENST00000509084 GRIN2BQ13224 1484 aa17.01■□□□□ 0.31
RFC1-211ENST00000509084 AQRO60306 1485 aaKnown RBP eCLIP17■□□□□ 0.31
RFC1-211ENST00000509084 KIF21BO75037 1637 aa17■□□□□ 0.31
RFC1-211ENST00000509084 IGF1RP08069 1367 aa16.99■□□□□ 0.31
RFC1-211ENST00000509084 PRXQ9BXM0 1461 aa16.97■□□□□ 0.31
RFC1-211ENST00000509084 GOLGA3Q08378 1498 aa16.94■□□□□ 0.3
RFC1-211ENST00000509084 MAGI1Q96QZ7 1491 aaPredicted RBP16.94■□□□□ 0.3
RFC1-211ENST00000509084 CARMIL1Q5VZK9 1371 aa16.93■□□□□ 0.3
RFC1-211ENST00000509084 ADAMTS12P58397 1594 aa16.93■□□□□ 0.3
RFC1-211ENST00000509084 RAPGEF2Q9Y4G8 1499 aa16.92■□□□□ 0.3
RFC1-211ENST00000509084 FHAD1B1AJZ9 1412 aa16.91■□□□□ 0.3
RFC1-211ENST00000509084 SNAPC4Q5SXM2 1469 aa16.91■□□□□ 0.3
RFC1-211ENST00000509084 DNAJC5Q9H3Z4 198 aa16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms