RNA–Protein interactions for RNA: ENST00000508499.5

USP46-207, Transcript of ubiquitin specific peptidase 46, humanhuman

TSL 2 BASIC

Gene USP46, Length 1,419 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP46-207ENST00000508499 AEBP2Q6ZN18 517 aaPredicted RBP22.64■■□□□ 1.21
USP46-207ENST00000508499 CHIC1Q5VXU3 224 aa21.21■□□□□ 0.99
USP46-207ENST00000508499 NISCHQ9Y2I1 1504 aa20.61■□□□□ 0.89
USP46-207ENST00000508499 SENP3Q9H4L4 574 aaPredicted RBP19.48■□□□□ 0.71
USP46-207ENST00000508499 PHF23Q9BUL5 403 aaPredicted RBP19.08■□□□□ 0.64
USP46-207ENST00000508499 CCDC180Q9P1Z9 1646 aa18.31■□□□□ 0.52
USP46-207ENST00000508499 FOXD1Q16676 465 aa18.17■□□□□ 0.5
USP46-207ENST00000508499 POTEDQ86YR6 584 aa17.88■□□□□ 0.45
USP46-207ENST00000508499 ABCC9O60706 1549 aa17.34■□□□□ 0.37
USP46-207ENST00000508499 MSH5O43196 834 aa17.31■□□□□ 0.36
USP46-207ENST00000508499 ZCCHC6Q5VYS8 1495 aaKnown RBP17.26■□□□□ 0.35
USP46-207ENST00000508499 DCAF1Q9Y4B6 1507 aa17.19■□□□□ 0.34
USP46-207ENST00000508499 MYO15BQ96JP2 1530 aa17.18■□□□□ 0.34
USP46-207ENST00000508499 NACADO15069 1562 aa17.08■□□□□ 0.32
USP46-207ENST00000508499 RB1CC1Q8TDY2 1594 aa16.99■□□□□ 0.31
USP46-207ENST00000508499 PIAS4Q8N2W9 510 aaPredicted RBP16.83■□□□□ 0.28
USP46-207ENST00000508499 DCAF8L2P0C7V8 631 aa16.79■□□□□ 0.28
USP46-207ENST00000508499 UNC13AQ9UPW8 1703 aa16.66■□□□□ 0.26
USP46-207ENST00000508499 SCRIBQ14160 1630 aa16.53■□□□□ 0.24
USP46-207ENST00000508499 PLPPR3Q6T4P5 718 aa16.47■□□□□ 0.23
USP46-207ENST00000508499 PPP6R1Q9UPN7 881 aa16.47■□□□□ 0.23
USP46-207ENST00000508499 BICRAQ9NZM4 1560 aa16.46■□□□□ 0.22
USP46-207ENST00000508499 SHROOM4Q9ULL8 1493 aa16.44■□□□□ 0.22
USP46-207ENST00000508499 ADRA2BP18089 450 aa16.37■□□□□ 0.21
USP46-207ENST00000508499 PABPN1Q86U42 306 aaKnown RBP eCLIP16.18■□□□□ 0.18
USP46-207ENST00000508499 EIF4G1Q04637 1599 aaKnown RBP15.98■□□□□ 0.15
USP46-207ENST00000508499 BAZ1AQ9NRL2 1556 aaPredicted RBP15.98■□□□□ 0.15
USP46-207ENST00000508499 SMARCA4P51532 1647 aa15.94■□□□□ 0.14
USP46-207ENST00000508499 CECR2Q9BXF3 1484 aa15.92■□□□□ 0.14
USP46-207ENST00000508499 PEG3Q9GZU2 1588 aa15.87■□□□□ 0.13
USP46-207ENST00000508499 MROH2BQ7Z745 1585 aa15.83■□□□□ 0.13
USP46-207ENST00000508499 CC2D2AQ9P2K1 1620 aa15.8■□□□□ 0.12
USP46-207ENST00000508499 SMARCA2P51531 1590 aa15.78■□□□□ 0.12
USP46-207ENST00000508499 RSF1Q96T23 1441 aaPredicted RBP15.78■□□□□ 0.12
USP46-207ENST00000508499 ATAD2BQ9ULI0 1458 aa15.73■□□□□ 0.11
USP46-207ENST00000508499 NCAPD3P42695 1498 aa15.72■□□□□ 0.11
USP46-207ENST00000508499 HMGXB3Q12766 1538 aa15.72■□□□□ 0.11
USP46-207ENST00000508499 WIZO95785 1651 aa15.69■□□□□ 0.1
USP46-207ENST00000508499 BAZ1BQ9UIG0 1483 aaKnown RBP15.6■□□□□ 0.09
USP46-207ENST00000508499 TOP2AP11388 1531 aaKnown RBP15.59■□□□□ 0.09
USP46-207ENST00000508499 DNAJC5BQ9UF47 199 aa15.59■□□□□ 0.09
USP46-207ENST00000508499 SUPT5HO00267 1087 aaKnown RBP15.41■□□□□ 0.06
USP46-207ENST00000508499 DMRT2Q9Y5R5 561 aa15.34■□□□□ 0.05
USP46-207ENST00000508499 CCDC88BA6NC98 1476 aa15.34■□□□□ 0.05
USP46-207ENST00000508499 PRDM2Q13029 1718 aa15.28■□□□□ 0.04
USP46-207ENST00000508499 LAMC3Q9Y6N6 1575 aa15.28■□□□□ 0.04
USP46-207ENST00000508499 CFTRP13569 1480 aa15.25■□□□□ 0.03
USP46-207ENST00000508499 CADPSQ9ULU8 1353 aa15.22■□□□□ 0.03
USP46-207ENST00000508499 MAPK8IP2Q13387 824 aaPredicted RBP15.2■□□□□ 0.02
USP46-207ENST00000508499 CACNB1Q02641 598 aaPredicted RBP15.16■□□□□ 0.02
USP46-207ENST00000508499 NESP48681 1621 aa15.12■□□□□ 0.01
USP46-207ENST00000508499 PDS5BQ9NTI5 1447 aa15.09■□□□□ 0.01
USP46-207ENST00000508499 SCAF1Q9H7N4 1312 aaKnown RBP15.08■□□□□ 0.01
USP46-207ENST00000508499 KIF21AQ7Z4S6 1674 aa15.06■□□□□ 0
USP46-207ENST00000508499 FANCD2Q9BXW9 1451 aa15.04■□□□□ -0
USP46-207ENST00000508499 CEP164Q9UPV0 1460 aa15□□□□□ -0.01
USP46-207ENST00000508499 THOC2Q8NI27 1593 aaKnown RBP14.95□□□□□ -0.02
USP46-207ENST00000508499 ABCC8Q09428 1581 aa14.94□□□□□ -0.02
USP46-207ENST00000508499 ERCC6Q03468 1493 aa14.93□□□□□ -0.02
USP46-207ENST00000508499 MRC2Q9UBG0 1479 aa14.92□□□□□ -0.02
USP46-207ENST00000508499 WDR62O43379 1518 aa14.92□□□□□ -0.02
USP46-207ENST00000508499 DNMBPQ6XZF7 1577 aa14.9□□□□□ -0.02
USP46-207ENST00000508499 BIVM-ERCC5R4GMW8 1640 aa14.9□□□□□ -0.02
USP46-207ENST00000508499 URB2Q14146 1524 aaKnown RBP14.87□□□□□ -0.03
USP46-207ENST00000508499 TOP2BQ02880 1626 aa14.87□□□□□ -0.03
USP46-207ENST00000508499 WRNQ14191 1432 aaPredicted RBP eCLIP14.86□□□□□ -0.03
USP46-207ENST00000508499 CUX1P39880 1505 aa14.85□□□□□ -0.03
USP46-207ENST00000508499 TOPBP1Q92547 1522 aa14.85□□□□□ -0.03
USP46-207ENST00000508499 SYNJ1O43426 1573 aa14.82□□□□□ -0.04
USP46-207ENST00000508499 CUX2O14529 1486 aa14.8□□□□□ -0.04
USP46-207ENST00000508499 POLA1P09884 1462 aaPredicted RBP14.74□□□□□ -0.05
USP46-207ENST00000508499 FGD5Q6ZNL6 1462 aa14.73□□□□□ -0.05
USP46-207ENST00000508499 WDR97A6NE52 1622 aa14.72□□□□□ -0.05
USP46-207ENST00000508499 TARBP1Q13395 1621 aaKnown RBP14.72□□□□□ -0.05
USP46-207ENST00000508499 IFT140Q96RY7 1462 aa14.69□□□□□ -0.06
USP46-207ENST00000508499 RNF39Q9H2S5 420 aa14.68□□□□□ -0.06
USP46-207ENST00000508499 ABCA10Q8WWZ4 1543 aa14.67□□□□□ -0.06
USP46-207ENST00000508499 SOGA1O94964 1423 aa14.64□□□□□ -0.07
USP46-207ENST00000508499 DCAF8L1A6NGE4 600 aa14.63□□□□□ -0.07
USP46-207ENST00000508499 TRIM41Q8WV44 630 aa14.62□□□□□ -0.07
USP46-207ENST00000508499 ABCA5Q8WWZ7 1642 aa14.6□□□□□ -0.07
USP46-207ENST00000508499 RAD54L2Q9Y4B4 1467 aa14.59□□□□□ -0.07
USP46-207ENST00000508499 EIF4G3O43432 1585 aaKnown RBP14.57□□□□□ -0.08
USP46-207ENST00000508499 HOXD11P31277 338 aaPredicted RBP14.56□□□□□ -0.08
USP46-207ENST00000508499 PBRM1Q86U86 1689 aa14.53□□□□□ -0.08
USP46-207ENST00000508499 EEA1Q15075 1411 aa14.53□□□□□ -0.08
USP46-207ENST00000508499 KIF27Q86VH2 1401 aa14.53□□□□□ -0.08
USP46-207ENST00000508499 ERICH3Q5RHP9 1530 aa14.52□□□□□ -0.09
USP46-207ENST00000508499 ZNF608Q9ULD9 1512 aaPredicted RBP14.52□□□□□ -0.09
USP46-207ENST00000508499 GAPVD1Q14C86 1478 aa14.51□□□□□ -0.09
USP46-207ENST00000508499 GRIN2BQ13224 1484 aa14.48□□□□□ -0.09
USP46-207ENST00000508499 TDRD9Q8NDG6 1382 aaKnown RBP14.47□□□□□ -0.09
USP46-207ENST00000508499 C1QBPQ07021 282 aaKnown RBP14.47□□□□□ -0.09
USP46-207ENST00000508499 CUL7Q14999 1698 aa14.47□□□□□ -0.09
USP46-207ENST00000508499 AQRO60306 1485 aaKnown RBP eCLIP14.46□□□□□ -0.09
USP46-207ENST00000508499 MAGI1Q96QZ7 1491 aaPredicted RBP14.46□□□□□ -0.1
USP46-207ENST00000508499 RUSC2Q8N2Y8 1516 aa14.42□□□□□ -0.1
USP46-207ENST00000508499 IGF1RP08069 1367 aa14.41□□□□□ -0.1
USP46-207ENST00000508499 ADAMTS12P58397 1594 aa14.41□□□□□ -0.1
USP46-207ENST00000508499 SNAPC4Q5SXM2 1469 aa14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms