RNA–Protein interactions for RNA: ENST00000507536.1

PDGFRA-205, Transcript of platelet derived growth factor receptor alpha, humanhuman

TSL 1 (best)

Gene PDGFRA, Length 1,146 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRA-205ENST00000507536 AEBP2Q6ZN18 517 aaPredicted RBP30.23■■■□□ 2.43
PDGFRA-205ENST00000507536 CHIC1Q5VXU3 224 aa29.08■■■□□ 2.25
PDGFRA-205ENST00000507536 NISCHQ9Y2I1 1504 aa26.33■■□□□ 1.81
PDGFRA-205ENST00000507536 SENP3Q9H4L4 574 aaPredicted RBP25.61■■□□□ 1.69
PDGFRA-205ENST00000507536 PHF23Q9BUL5 403 aaPredicted RBP25.57■■□□□ 1.68
PDGFRA-205ENST00000507536 FOXD1Q16676 465 aa23.89■■□□□ 1.41
PDGFRA-205ENST00000507536 CCDC180Q9P1Z9 1646 aa23.77■■□□□ 1.4
PDGFRA-205ENST00000507536 ABCC9O60706 1549 aa23.68■■□□□ 1.38
PDGFRA-205ENST00000507536 PLPPR3Q6T4P5 718 aa23.39■■□□□ 1.33
PDGFRA-205ENST00000507536 PPP6R1Q9UPN7 881 aa22.7■■□□□ 1.22
PDGFRA-205ENST00000507536 ADRA2BP18089 450 aa22.64■■□□□ 1.21
PDGFRA-205ENST00000507536 RB1CC1Q8TDY2 1594 aa22.55■■□□□ 1.2
PDGFRA-205ENST00000507536 PIAS4Q8N2W9 510 aaPredicted RBP22.4■■□□□ 1.18
PDGFRA-205ENST00000507536 NACADO15069 1562 aa22.38■■□□□ 1.17
PDGFRA-205ENST00000507536 UNC13AQ9UPW8 1703 aa22.28■■□□□ 1.16
PDGFRA-205ENST00000507536 DNAJC5BQ9UF47 199 aa22.26■■□□□ 1.15
PDGFRA-205ENST00000507536 MSH5O43196 834 aa22.1■■□□□ 1.13
PDGFRA-205ENST00000507536 MYO15BQ96JP2 1530 aa22.06■■□□□ 1.12
PDGFRA-205ENST00000507536 BICRAQ9NZM4 1560 aa22■■□□□ 1.11
PDGFRA-205ENST00000507536 DCAF8L2P0C7V8 631 aa22■■□□□ 1.11
PDGFRA-205ENST00000507536 PABPN1Q86U42 306 aaKnown RBP eCLIP21.95■■□□□ 1.1
PDGFRA-205ENST00000507536 ZCCHC6Q5VYS8 1495 aaKnown RBP21.84■■□□□ 1.09
PDGFRA-205ENST00000507536 DCAF1Q9Y4B6 1507 aa21.77■■□□□ 1.08
PDGFRA-205ENST00000507536 SHROOM4Q9ULL8 1493 aa21.6■■□□□ 1.05
PDGFRA-205ENST00000507536 SCRIBQ14160 1630 aa21.59■■□□□ 1.05
PDGFRA-205ENST00000507536 CC2D2AQ9P2K1 1620 aa21.48■■□□□ 1.03
PDGFRA-205ENST00000507536 EIF4G1Q04637 1599 aaKnown RBP21.4■■□□□ 1.02
PDGFRA-205ENST00000507536 CECR2Q9BXF3 1484 aa21.32■■□□□ 1
PDGFRA-205ENST00000507536 POTEDQ86YR6 584 aa20.9■□□□□ 0.94
PDGFRA-205ENST00000507536 MAPK8IP2Q13387 824 aaPredicted RBP20.67■□□□□ 0.9
PDGFRA-205ENST00000507536 NCAPD3P42695 1498 aa20.62■□□□□ 0.89
PDGFRA-205ENST00000507536 SMARCA4P51532 1647 aa20.62■□□□□ 0.89
PDGFRA-205ENST00000507536 SCAF1Q9H7N4 1312 aaKnown RBP20.59■□□□□ 0.89
PDGFRA-205ENST00000507536 PPP4R3CPQ6ZMV5 832 aa20.59■□□□□ 0.89
PDGFRA-205ENST00000507536 ATAD2BQ9ULI0 1458 aa20.57■□□□□ 0.88
PDGFRA-205ENST00000507536 HMGXB3Q12766 1538 aa20.54■□□□□ 0.88
PDGFRA-205ENST00000507536 SMARCA2P51531 1590 aa20.52■□□□□ 0.88
PDGFRA-205ENST00000507536 CUX2O14529 1486 aa20.44■□□□□ 0.86
PDGFRA-205ENST00000507536 BAZ1AQ9NRL2 1556 aaPredicted RBP20.43■□□□□ 0.86
PDGFRA-205ENST00000507536 DNAJC5Q9H3Z4 198 aa20.43■□□□□ 0.86
PDGFRA-205ENST00000507536 PEG3Q9GZU2 1588 aa20.42■□□□□ 0.86
PDGFRA-205ENST00000507536 DMRT2Q9Y5R5 561 aa20.41■□□□□ 0.86
PDGFRA-205ENST00000507536 ERCC6Q03468 1493 aa20.39■□□□□ 0.85
PDGFRA-205ENST00000507536 NESP48681 1621 aa20.38■□□□□ 0.85
PDGFRA-205ENST00000507536 BAZ1BQ9UIG0 1483 aaKnown RBP20.35■□□□□ 0.85
PDGFRA-205ENST00000507536 MROH2BQ7Z745 1585 aa20.3■□□□□ 0.84
PDGFRA-205ENST00000507536 THOC2Q8NI27 1593 aaKnown RBP20.28■□□□□ 0.84
PDGFRA-205ENST00000507536 KIF21AQ7Z4S6 1674 aa20.23■□□□□ 0.83
PDGFRA-205ENST00000507536 LAMC3Q9Y6N6 1575 aa20.23■□□□□ 0.83
PDGFRA-205ENST00000507536 WIZO95785 1651 aa20.11■□□□□ 0.81
PDGFRA-205ENST00000507536 CNKSR2Q8WXI2 1034 aa20.08■□□□□ 0.81
PDGFRA-205ENST00000507536 PDS5BQ9NTI5 1447 aa20■□□□□ 0.79
PDGFRA-205ENST00000507536 CADPSQ9ULU8 1353 aa19.95■□□□□ 0.78
PDGFRA-205ENST00000507536 WDR62O43379 1518 aa19.92■□□□□ 0.78
PDGFRA-205ENST00000507536 MRC2Q9UBG0 1479 aa19.9■□□□□ 0.78
PDGFRA-205ENST00000507536 NCBP3Q53F19 620 aaKnown RBP19.86■□□□□ 0.77
PDGFRA-205ENST00000507536 HOXD11P31277 338 aaPredicted RBP19.83■□□□□ 0.77
PDGFRA-205ENST00000507536 RSF1Q96T23 1441 aaPredicted RBP19.8■□□□□ 0.76
PDGFRA-205ENST00000507536 TOP2AP11388 1531 aaKnown RBP19.8■□□□□ 0.76
PDGFRA-205ENST00000507536 CEP164Q9UPV0 1460 aa19.79■□□□□ 0.76
PDGFRA-205ENST00000507536 PRDM2Q13029 1718 aa19.79■□□□□ 0.76
PDGFRA-205ENST00000507536 RNF216Q9NWF9 866 aaPredicted RBP19.78■□□□□ 0.76
PDGFRA-205ENST00000507536 CFTRP13569 1480 aa19.77■□□□□ 0.76
PDGFRA-205ENST00000507536 FANCD2Q9BXW9 1451 aa19.77■□□□□ 0.76
PDGFRA-205ENST00000507536 KCNA4P22459 653 aa19.7■□□□□ 0.74
PDGFRA-205ENST00000507536 NPM3O75607 178 aaKnown RBP19.67■□□□□ 0.74
PDGFRA-205ENST00000507536 URB2Q14146 1524 aaKnown RBP19.66■□□□□ 0.74
PDGFRA-205ENST00000507536 DCAF8L1A6NGE4 600 aa19.54■□□□□ 0.72
PDGFRA-205ENST00000507536 CCDC88BA6NC98 1476 aa19.54■□□□□ 0.72
PDGFRA-205ENST00000507536 TRIM41Q8WV44 630 aa19.45■□□□□ 0.7
PDGFRA-205ENST00000507536 TOPBP1Q92547 1522 aa19.42■□□□□ 0.7
PDGFRA-205ENST00000507536 ZNF608Q9ULD9 1512 aaPredicted RBP19.42■□□□□ 0.7
PDGFRA-205ENST00000507536 EIF4G3O43432 1585 aaKnown RBP19.38■□□□□ 0.69
PDGFRA-205ENST00000507536 IFT140Q96RY7 1462 aa19.38■□□□□ 0.69
PDGFRA-205ENST00000507536 DNMBPQ6XZF7 1577 aa19.37■□□□□ 0.69
PDGFRA-205ENST00000507536 OSCARQ8IYS5 282 aa19.36■□□□□ 0.69
PDGFRA-205ENST00000507536 RIMBP3CA6NJZ7 1639 aa19.34■□□□□ 0.69
PDGFRA-205ENST00000507536 RIMBP3BA6NNM3 1639 aa19.34■□□□□ 0.69
PDGFRA-205ENST00000507536 TARBP1Q13395 1621 aaKnown RBP19.34■□□□□ 0.69
PDGFRA-205ENST00000507536 RIMBP3Q9UFD9 1639 aa19.34■□□□□ 0.69
PDGFRA-205ENST00000507536 CHD1O14646 1710 aa19.31■□□□□ 0.68
PDGFRA-205ENST00000507536 ABCC8Q09428 1581 aa19.3■□□□□ 0.68
PDGFRA-205ENST00000507536 ARHGEF11O15085 1522 aa19.22■□□□□ 0.67
PDGFRA-205ENST00000507536 POLA1P09884 1462 aaPredicted RBP19.22■□□□□ 0.67
PDGFRA-205ENST00000507536 AQRO60306 1485 aaKnown RBP eCLIP19.18■□□□□ 0.66
PDGFRA-205ENST00000507536 RAD54L2Q9Y4B4 1467 aa19.12■□□□□ 0.65
PDGFRA-205ENST00000507536 WDR97A6NE52 1622 aa19.11■□□□□ 0.65
PDGFRA-205ENST00000507536 CUX1P39880 1505 aa19.1■□□□□ 0.65
PDGFRA-205ENST00000507536 FGD5Q6ZNL6 1462 aa19.08■□□□□ 0.64
PDGFRA-205ENST00000507536 ARAP1Q96P48 1450 aa19.03■□□□□ 0.64
PDGFRA-205ENST00000507536 SOGA1O94964 1423 aa19.03■□□□□ 0.64
PDGFRA-205ENST00000507536 PBRM1Q86U86 1689 aa19.02■□□□□ 0.64
PDGFRA-205ENST00000507536 CLASP1Q7Z460 1538 aa19.01■□□□□ 0.63
PDGFRA-205ENST00000507536 TDRD9Q8NDG6 1382 aaKnown RBP19.01■□□□□ 0.63
PDGFRA-205ENST00000507536 SNAPC4Q5SXM2 1469 aa19.01■□□□□ 0.63
PDGFRA-205ENST00000507536 RNF39Q9H2S5 420 aa18.95■□□□□ 0.62
PDGFRA-205ENST00000507536 MAGI1Q96QZ7 1491 aaPredicted RBP18.95■□□□□ 0.62
PDGFRA-205ENST00000507536 ABCA5Q8WWZ7 1642 aa18.93■□□□□ 0.62
PDGFRA-205ENST00000507536 SYNJ1O43426 1573 aa18.93■□□□□ 0.62
PDGFRA-205ENST00000507536 FBLN2P98095 1184 aa18.92■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms