RNA–Protein interactions for RNA: ENST00000504948.5

ATP2C1-208, Transcript of ATPase secretory pathway Ca2+ transporting 1, humanhuman

TSL 1 (best) BASIC

Gene ATP2C1, Length 4,714 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATP2C1-208ENST00000504948 NISCHQ9Y2I1 1504 aa15.91■□□□□ 0.14
ATP2C1-208ENST00000504948 CCDC180Q9P1Z9 1646 aa14.79□□□□□ -0.04
ATP2C1-208ENST00000504948 MYO15BQ96JP2 1530 aa13.84□□□□□ -0.19
ATP2C1-208ENST00000504948 UNC13AQ9UPW8 1703 aa13.73□□□□□ -0.21
ATP2C1-208ENST00000504948 DCAF1Q9Y4B6 1507 aa13.66□□□□□ -0.22
ATP2C1-208ENST00000504948 NACADO15069 1562 aa13.54□□□□□ -0.24
ATP2C1-208ENST00000504948 RB1CC1Q8TDY2 1594 aa13.43□□□□□ -0.26
ATP2C1-208ENST00000504948 SHROOM4Q9ULL8 1493 aa13.4□□□□□ -0.26
ATP2C1-208ENST00000504948 ZCCHC6Q5VYS8 1495 aaKnown RBP13.39□□□□□ -0.27
ATP2C1-208ENST00000504948 BICRAQ9NZM4 1560 aa13.35□□□□□ -0.27
ATP2C1-208ENST00000504948 ABCC9O60706 1549 aa13.35□□□□□ -0.27
ATP2C1-208ENST00000504948 SUPT5HO00267 1087 aaKnown RBP13.13□□□□□ -0.31
ATP2C1-208ENST00000504948 PCGF6Q9BYE7 350 aa13.05□□□□□ -0.32
ATP2C1-208ENST00000504948 EHMT2Q96KQ7 1210 aa13.03□□□□□ -0.32
ATP2C1-208ENST00000504948 PPARGC1BQ86YN6 1023 aaKnown RBP12.94□□□□□ -0.34
ATP2C1-208ENST00000504948 DCAF8L2P0C7V8 631 aa12.88□□□□□ -0.35
ATP2C1-208ENST00000504948 PEG3Q9GZU2 1588 aa12.78□□□□□ -0.36
ATP2C1-208ENST00000504948 EIF4G1Q04637 1599 aaKnown RBP12.7□□□□□ -0.38
ATP2C1-208ENST00000504948 SCRIBQ14160 1630 aa12.66□□□□□ -0.38
ATP2C1-208ENST00000504948 CC2D2AQ9P2K1 1620 aa12.65□□□□□ -0.39
ATP2C1-208ENST00000504948 TTBK1Q5TCY1 1321 aaPredicted RBP12.62□□□□□ -0.39
ATP2C1-208ENST00000504948 HRCP23327 699 aa12.58□□□□□ -0.4
ATP2C1-208ENST00000504948 HMGXB3Q12766 1538 aa12.53□□□□□ -0.4
ATP2C1-208ENST00000504948 YTHDC1Q96MU7 727 aaKnown RBP12.52□□□□□ -0.41
ATP2C1-208ENST00000504948 SMARCA2P51531 1590 aa12.51□□□□□ -0.41
ATP2C1-208ENST00000504948 PELP1Q8IZL8 1130 aaKnown RBP12.5□□□□□ -0.41
ATP2C1-208ENST00000504948 SMARCA4P51532 1647 aa12.49□□□□□ -0.41
ATP2C1-208ENST00000504948 PRDM2Q13029 1718 aa12.49□□□□□ -0.41
ATP2C1-208ENST00000504948 FAM9AQ8IZU1 332 aaPredicted RBP12.45□□□□□ -0.42
ATP2C1-208ENST00000504948 DNAJC5BQ9UF47 199 aa12.39□□□□□ -0.43
ATP2C1-208ENST00000504948 NCAPD3P42695 1498 aa12.36□□□□□ -0.43
ATP2C1-208ENST00000504948 BAZ1AQ9NRL2 1556 aaPredicted RBP12.31□□□□□ -0.44
ATP2C1-208ENST00000504948 LOC105371045A0A1W2PR82 267 aa12.27□□□□□ -0.45
ATP2C1-208ENST00000504948 THOC2Q8NI27 1593 aaKnown RBP12.26□□□□□ -0.45
ATP2C1-208ENST00000504948 ATAD2BQ9ULI0 1458 aa12.21□□□□□ -0.45
ATP2C1-208ENST00000504948 CECR2Q9BXF3 1484 aa12.2□□□□□ -0.46
ATP2C1-208ENST00000504948 CENPBP07199 599 aaPredicted RBP12.18□□□□□ -0.46
ATP2C1-208ENST00000504948 LAMC3Q9Y6N6 1575 aa12.17□□□□□ -0.46
ATP2C1-208ENST00000504948 CCER1Q8TC90 406 aaPredicted RBP12.16□□□□□ -0.46
ATP2C1-208ENST00000504948 GTF3C3Q9Y5Q9 886 aa12.15□□□□□ -0.46
ATP2C1-208ENST00000504948 SCAF1Q9H7N4 1312 aaKnown RBP12.13□□□□□ -0.47
ATP2C1-208ENST00000504948 MROH2BQ7Z745 1585 aa12.12□□□□□ -0.47
ATP2C1-208ENST00000504948 KIF21AQ7Z4S6 1674 aa12.11□□□□□ -0.47
ATP2C1-208ENST00000504948 MYT1Q01538 1121 aa12.09□□□□□ -0.47
ATP2C1-208ENST00000504948 WIZO95785 1651 aa12.07□□□□□ -0.48
ATP2C1-208ENST00000504948 TOP2AP11388 1531 aaKnown RBP12.05□□□□□ -0.48
ATP2C1-208ENST00000504948 CUX2O14529 1486 aa12.03□□□□□ -0.48
ATP2C1-208ENST00000504948 WDR62O43379 1518 aa12.01□□□□□ -0.49
ATP2C1-208ENST00000504948 PABPN1Q86U42 306 aaKnown RBP eCLIP12.01□□□□□ -0.49
ATP2C1-208ENST00000504948 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12□□□□□ -0.49
ATP2C1-208ENST00000504948 RANGAP1P46060 587 aaPredicted RBP11.96□□□□□ -0.49
ATP2C1-208ENST00000504948 WDR97A6NE52 1622 aa11.96□□□□□ -0.49
ATP2C1-208ENST00000504948 TRIM26Q12899 539 aaPredicted RBP11.94□□□□□ -0.5
ATP2C1-208ENST00000504948 NEUROD1Q13562 356 aa11.92□□□□□ -0.5
ATP2C1-208ENST00000504948 CHIC1Q5VXU3 224 aa11.91□□□□□ -0.5
ATP2C1-208ENST00000504948 BCANQ96GW7 911 aa11.91□□□□□ -0.5
ATP2C1-208ENST00000504948 ERICH6Q7L0X2 663 aa11.9□□□□□ -0.5
ATP2C1-208ENST00000504948 ZEB1P37275 1124 aaPredicted RBP11.89□□□□□ -0.51
ATP2C1-208ENST00000504948 BAZ1BQ9UIG0 1483 aaKnown RBP11.88□□□□□ -0.51
ATP2C1-208ENST00000504948 CFTRP13569 1480 aa11.86□□□□□ -0.51
ATP2C1-208ENST00000504948 DIEXFQ68CQ4 756 aaKnown RBP11.85□□□□□ -0.51
ATP2C1-208ENST00000504948 RSF1Q96T23 1441 aaPredicted RBP11.84□□□□□ -0.51
ATP2C1-208ENST00000504948 ACIN1Q9UKV3 1341 aaKnown RBP11.84□□□□□ -0.51
ATP2C1-208ENST00000504948 TARBP1Q13395 1621 aaKnown RBP11.78□□□□□ -0.52
ATP2C1-208ENST00000504948 TRIM41Q8WV44 630 aa11.74□□□□□ -0.53
ATP2C1-208ENST00000504948 NESP48681 1621 aa11.73□□□□□ -0.53
ATP2C1-208ENST00000504948 BIVM-ERCC5R4GMW8 1640 aa11.73□□□□□ -0.53
ATP2C1-208ENST00000504948 MRC2Q9UBG0 1479 aa11.69□□□□□ -0.54
ATP2C1-208ENST00000504948 CNGB1Q14028 1251 aaPredicted RBP11.67□□□□□ -0.54
ATP2C1-208ENST00000504948 HNRNPUL2Q1KMD3 747 aaKnown RBP11.66□□□□□ -0.54
ATP2C1-208ENST00000504948 DNMBPQ6XZF7 1577 aa11.65□□□□□ -0.54
ATP2C1-208ENST00000504948 URB2Q14146 1524 aaKnown RBP11.65□□□□□ -0.54
ATP2C1-208ENST00000504948 CADPSQ9ULU8 1353 aa11.64□□□□□ -0.55
ATP2C1-208ENST00000504948 ABCA5Q8WWZ7 1642 aa11.62□□□□□ -0.55
ATP2C1-208ENST00000504948 CCDC88BA6NC98 1476 aa11.61□□□□□ -0.55
ATP2C1-208ENST00000504948 PBRM1Q86U86 1689 aa11.59□□□□□ -0.55
ATP2C1-208ENST00000504948 NEFLP07196 543 aa11.57□□□□□ -0.56
ATP2C1-208ENST00000504948 PDS5BQ9NTI5 1447 aa11.56□□□□□ -0.56
ATP2C1-208ENST00000504948 EIF4G3O43432 1585 aaKnown RBP11.55□□□□□ -0.56
ATP2C1-208ENST00000504948 BCL11AQ9H165 835 aa11.54□□□□□ -0.56
ATP2C1-208ENST00000504948 FANCD2Q9BXW9 1451 aa11.54□□□□□ -0.56
ATP2C1-208ENST00000504948 ABCC8Q09428 1581 aa11.54□□□□□ -0.56
ATP2C1-208ENST00000504948 ITGAEP38570 1179 aa11.53□□□□□ -0.56
ATP2C1-208ENST00000504948 CEP164Q9UPV0 1460 aa11.53□□□□□ -0.56
ATP2C1-208ENST00000504948 APLP2Q06481 763 aa11.52□□□□□ -0.56
ATP2C1-208ENST00000504948 SHROOM2Q13796 1616 aa11.52□□□□□ -0.57
ATP2C1-208ENST00000504948 CHD1O14646 1710 aa11.51□□□□□ -0.57
ATP2C1-208ENST00000504948 CLASP1Q7Z460 1538 aa11.5□□□□□ -0.57
ATP2C1-208ENST00000504948 UBTFP17480 764 aaKnown RBP11.5□□□□□ -0.57
ATP2C1-208ENST00000504948 TOPBP1Q92547 1522 aa11.5□□□□□ -0.57
ATP2C1-208ENST00000504948 TOP2BQ02880 1626 aa11.49□□□□□ -0.57
ATP2C1-208ENST00000504948 CUX1P39880 1505 aa11.45□□□□□ -0.58
ATP2C1-208ENST00000504948 IFT140Q96RY7 1462 aa11.43□□□□□ -0.58
ATP2C1-208ENST00000504948 MIER1Q8N108 512 aa11.41□□□□□ -0.58
ATP2C1-208ENST00000504948 EIF5BO60841 1220 aaKnown RBP11.41□□□□□ -0.58
ATP2C1-208ENST00000504948 NBR1Q14596 966 aa11.37□□□□□ -0.59
ATP2C1-208ENST00000504948 ERCC6Q03468 1493 aa11.36□□□□□ -0.59
ATP2C1-208ENST00000504948 RTN4Q9NQC3 1192 aaKnown RBP11.36□□□□□ -0.59
ATP2C1-208ENST00000504948 ATP1B4Q9UN42 357 aaPredicted RBP11.36□□□□□ -0.59
ATP2C1-208ENST00000504948 ABCA10Q8WWZ4 1543 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms