RNA–Protein interactions for RNA: ENST00000503060.5

USP46-204, Transcript of ubiquitin specific peptidase 46, humanhuman

TSL 5

Gene USP46, Length 2,437 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP46-204ENST00000503060 NISCHQ9Y2I1 1504 aa25.21■■□□□ 1.63
USP46-204ENST00000503060 CCDC180Q9P1Z9 1646 aa21.76■■□□□ 1.07
USP46-204ENST00000503060 ZCCHC6Q5VYS8 1495 aaKnown RBP21.25■□□□□ 0.99
USP46-204ENST00000503060 SHROOM4Q9ULL8 1493 aa20.91■□□□□ 0.94
USP46-204ENST00000503060 DCAF1Q9Y4B6 1507 aa20.8■□□□□ 0.92
USP46-204ENST00000503060 DCAF8L2P0C7V8 631 aa20.77■□□□□ 0.92
USP46-204ENST00000503060 MYO15BQ96JP2 1530 aa20.4■□□□□ 0.86
USP46-204ENST00000503060 SLC24A1O60721 1099 aa20.35■□□□□ 0.85
USP46-204ENST00000503060 ABCC9O60706 1549 aa20.33■□□□□ 0.85
USP46-204ENST00000503060 SUPT5HO00267 1087 aaKnown RBP20.29■□□□□ 0.84
USP46-204ENST00000503060 NACADO15069 1562 aa20.19■□□□□ 0.82
USP46-204ENST00000503060 SCRIBQ14160 1630 aa20.14■□□□□ 0.81
USP46-204ENST00000503060 RB1CC1Q8TDY2 1594 aa19.94■□□□□ 0.78
USP46-204ENST00000503060 RSF1Q96T23 1441 aaPredicted RBP19.72■□□□□ 0.75
USP46-204ENST00000503060 CHIC1Q5VXU3 224 aa19.61■□□□□ 0.73
USP46-204ENST00000503060 CECR2Q9BXF3 1484 aa19.6■□□□□ 0.73
USP46-204ENST00000503060 UNC13AQ9UPW8 1703 aa19.57■□□□□ 0.72
USP46-204ENST00000503060 MROH2BQ7Z745 1585 aa19.51■□□□□ 0.71
USP46-204ENST00000503060 BAZ1AQ9NRL2 1556 aaPredicted RBP19.42■□□□□ 0.7
USP46-204ENST00000503060 WIZO95785 1651 aa19.37■□□□□ 0.69
USP46-204ENST00000503060 BICRAQ9NZM4 1560 aa19.37■□□□□ 0.69
USP46-204ENST00000503060 SMARCA4P51532 1647 aa19.3■□□□□ 0.68
USP46-204ENST00000503060 MYT1Q01538 1121 aa19.3■□□□□ 0.68
USP46-204ENST00000503060 PABPN1Q86U42 306 aaKnown RBP eCLIP19.27■□□□□ 0.68
USP46-204ENST00000503060 TOP2AP11388 1531 aaKnown RBP19.16■□□□□ 0.66
USP46-204ENST00000503060 TTBK1Q5TCY1 1321 aaPredicted RBP19.1■□□□□ 0.65
USP46-204ENST00000503060 PELP1Q8IZL8 1130 aaKnown RBP19.03■□□□□ 0.64
USP46-204ENST00000503060 TRIM41Q8WV44 630 aa19.03■□□□□ 0.64
USP46-204ENST00000503060 PEG3Q9GZU2 1588 aa19.02■□□□□ 0.63
USP46-204ENST00000503060 SMARCA2P51531 1590 aa19■□□□□ 0.63
USP46-204ENST00000503060 EIF4G1Q04637 1599 aaKnown RBP19■□□□□ 0.63
USP46-204ENST00000503060 CCDC88BA6NC98 1476 aa19■□□□□ 0.63
USP46-204ENST00000503060 LOC105371045A0A1W2PR82 267 aa18.9■□□□□ 0.62
USP46-204ENST00000503060 ATAD2BQ9ULI0 1458 aa18.9■□□□□ 0.62
USP46-204ENST00000503060 DAXXQ9UER7 740 aaPredicted RBP18.87■□□□□ 0.61
USP46-204ENST00000503060 BAZ1BQ9UIG0 1483 aaKnown RBP18.81■□□□□ 0.6
USP46-204ENST00000503060 FAM9AQ8IZU1 332 aaPredicted RBP18.73■□□□□ 0.59
USP46-204ENST00000503060 ABCC8Q09428 1581 aa18.73■□□□□ 0.59
USP46-204ENST00000503060 NCAPD3P42695 1498 aa18.65■□□□□ 0.58
USP46-204ENST00000503060 HMGXB3Q12766 1538 aa18.65■□□□□ 0.58
USP46-204ENST00000503060 PRKCSHP14314 528 aaPredicted RBP18.59■□□□□ 0.57
USP46-204ENST00000503060 APLP2Q06481 763 aa18.58■□□□□ 0.56
USP46-204ENST00000503060 WRNQ14191 1432 aaPredicted RBP eCLIP18.54■□□□□ 0.56
USP46-204ENST00000503060 EHMT2Q96KQ7 1210 aa18.49■□□□□ 0.55
USP46-204ENST00000503060 ERICH6Q7L0X2 663 aa18.47■□□□□ 0.55
USP46-204ENST00000503060 SOGA1O94964 1423 aa18.46■□□□□ 0.55
USP46-204ENST00000503060 SYNJ1O43426 1573 aa18.46■□□□□ 0.55
USP46-204ENST00000503060 EEA1Q15075 1411 aa18.45■□□□□ 0.54
USP46-204ENST00000503060 PCGF6Q9BYE7 350 aa18.42■□□□□ 0.54
USP46-204ENST00000503060 RUSC2Q8N2Y8 1516 aa18.38■□□□□ 0.53
USP46-204ENST00000503060 CC2D2AQ9P2K1 1620 aa18.38■□□□□ 0.53
USP46-204ENST00000503060 CFTRP13569 1480 aa18.35■□□□□ 0.53
USP46-204ENST00000503060 CSRNP3Q8WYN3 585 aa18.35■□□□□ 0.53
USP46-204ENST00000503060 TOP2BQ02880 1626 aa18.33■□□□□ 0.52
USP46-204ENST00000503060 BIVM-ERCC5R4GMW8 1640 aa18.3■□□□□ 0.52
USP46-204ENST00000503060 TRIM26Q12899 539 aaPredicted RBP18.3■□□□□ 0.52
USP46-204ENST00000503060 TNIKQ9UKE5 1360 aa18.25■□□□□ 0.51
USP46-204ENST00000503060 PRDM2Q13029 1718 aa18.24■□□□□ 0.51
USP46-204ENST00000503060 GOLGA3Q08378 1498 aa18.23■□□□□ 0.51
USP46-204ENST00000503060 CUX1P39880 1505 aa18.22■□□□□ 0.51
USP46-204ENST00000503060 CADPSQ9ULU8 1353 aa18.22■□□□□ 0.51
USP46-204ENST00000503060 KIF21BO75037 1637 aa18.2■□□□□ 0.5
USP46-204ENST00000503060 CEP162Q5TB80 1403 aa18.2■□□□□ 0.5
USP46-204ENST00000503060 CEP164Q9UPV0 1460 aa18.19■□□□□ 0.5
USP46-204ENST00000503060 HRCP23327 699 aa18.19■□□□□ 0.5
USP46-204ENST00000503060 UBTFP17480 764 aaKnown RBP18.17■□□□□ 0.5
USP46-204ENST00000503060 NCBP3Q53F19 620 aaKnown RBP18.13■□□□□ 0.49
USP46-204ENST00000503060 RAPGEF2Q9Y4G8 1499 aa18.06■□□□□ 0.48
USP46-204ENST00000503060 KIF27Q86VH2 1401 aa18.04■□□□□ 0.48
USP46-204ENST00000503060 FANCD2Q9BXW9 1451 aa18.02■□□□□ 0.48
USP46-204ENST00000503060 PRXQ9BXM0 1461 aa18.01■□□□□ 0.47
USP46-204ENST00000503060 PPARGC1BQ86YN6 1023 aaKnown RBP18.01■□□□□ 0.47
USP46-204ENST00000503060 ERICH3Q5RHP9 1530 aa18■□□□□ 0.47
USP46-204ENST00000503060 NESP48681 1621 aa17.97■□□□□ 0.47
USP46-204ENST00000503060 CLIP1P30622 1438 aa17.97■□□□□ 0.47
USP46-204ENST00000503060 FGD5Q6ZNL6 1462 aa17.96■□□□□ 0.47
USP46-204ENST00000503060 LAMC3Q9Y6N6 1575 aa17.94■□□□□ 0.46
USP46-204ENST00000503060 CUX2O14529 1486 aa17.92■□□□□ 0.46
USP46-204ENST00000503060 DNMBPQ6XZF7 1577 aa17.91■□□□□ 0.46
USP46-204ENST00000503060 PLPPR3Q6T4P5 718 aa17.89■□□□□ 0.45
USP46-204ENST00000503060 TOPBP1Q92547 1522 aa17.87■□□□□ 0.45
USP46-204ENST00000503060 DNAJC5BQ9UF47 199 aa17.87■□□□□ 0.45
USP46-204ENST00000503060 RTN4Q9NQC3 1192 aaKnown RBP17.86■□□□□ 0.45
USP46-204ENST00000503060 VPS8Q8N3P4 1428 aa17.86■□□□□ 0.45
USP46-204ENST00000503060 IGF1RP08069 1367 aa17.85■□□□□ 0.45
USP46-204ENST00000503060 POLA1P09884 1462 aaPredicted RBP17.82■□□□□ 0.44
USP46-204ENST00000503060 PDS5BQ9NTI5 1447 aa17.81■□□□□ 0.44
USP46-204ENST00000503060 RANGAP1P46060 587 aaPredicted RBP17.8■□□□□ 0.44
USP46-204ENST00000503060 URB2Q14146 1524 aaKnown RBP17.79■□□□□ 0.44
USP46-204ENST00000503060 ABCA10Q8WWZ4 1543 aa17.79■□□□□ 0.44
USP46-204ENST00000503060 RAD54L2Q9Y4B4 1467 aa17.79■□□□□ 0.44
USP46-204ENST00000503060 CARMIL1Q5VZK9 1371 aa17.77■□□□□ 0.43
USP46-204ENST00000503060 ARAP1Q96P48 1450 aa17.75■□□□□ 0.43
USP46-204ENST00000503060 ZEB1P37275 1124 aaPredicted RBP17.74■□□□□ 0.43
USP46-204ENST00000503060 KIF21AQ7Z4S6 1674 aa17.73■□□□□ 0.43
USP46-204ENST00000503060 WDR97A6NE52 1622 aa17.69■□□□□ 0.42
USP46-204ENST00000503060 ARHGAP35Q9NRY4 1499 aa17.67■□□□□ 0.42
USP46-204ENST00000503060 CUL7Q14999 1698 aa17.64■□□□□ 0.41
USP46-204ENST00000503060 ABCA5Q8WWZ7 1642 aa17.62■□□□□ 0.41
USP46-204ENST00000503060 ARXQ96QS3 562 aa17.59■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms