RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 NISCHQ9Y2I1 1504 aa18.02■□□□□ 0.47
USP54-215ENST00000497106 CCDC180Q9P1Z9 1646 aa15.7■□□□□ 0.1
USP54-215ENST00000497106 DCAF8L2P0C7V8 631 aa15.37■□□□□ 0.05
USP54-215ENST00000497106 ZCCHC6Q5VYS8 1495 aaKnown RBP15.1■□□□□ 0.01
USP54-215ENST00000497106 ABCC9O60706 1549 aa14.95□□□□□ -0.02
USP54-215ENST00000497106 DCAF1Q9Y4B6 1507 aa14.92□□□□□ -0.02
USP54-215ENST00000497106 SHROOM4Q9ULL8 1493 aa14.87□□□□□ -0.03
USP54-215ENST00000497106 MYO15BQ96JP2 1530 aa14.76□□□□□ -0.05
USP54-215ENST00000497106 NACADO15069 1562 aa14.76□□□□□ -0.05
USP54-215ENST00000497106 RB1CC1Q8TDY2 1594 aa14.67□□□□□ -0.06
USP54-215ENST00000497106 SUPT5HO00267 1087 aaKnown RBP14.49□□□□□ -0.09
USP54-215ENST00000497106 SCRIBQ14160 1630 aa14.46□□□□□ -0.1
USP54-215ENST00000497106 PABPN1Q86U42 306 aaKnown RBP eCLIP14.15□□□□□ -0.14
USP54-215ENST00000497106 BAZ1AQ9NRL2 1556 aaPredicted RBP14.04□□□□□ -0.16
USP54-215ENST00000497106 RSF1Q96T23 1441 aaPredicted RBP13.98□□□□□ -0.17
USP54-215ENST00000497106 CECR2Q9BXF3 1484 aa13.88□□□□□ -0.19
USP54-215ENST00000497106 MROH2BQ7Z745 1585 aa13.82□□□□□ -0.2
USP54-215ENST00000497106 SMARCA4P51532 1647 aa13.81□□□□□ -0.2
USP54-215ENST00000497106 BICRAQ9NZM4 1560 aa13.81□□□□□ -0.2
USP54-215ENST00000497106 UNC13AQ9UPW8 1703 aa13.81□□□□□ -0.2
USP54-215ENST00000497106 SMARCA2P51531 1590 aa13.8□□□□□ -0.2
USP54-215ENST00000497106 BAZ1BQ9UIG0 1483 aaKnown RBP13.74□□□□□ -0.21
USP54-215ENST00000497106 TRIM41Q8WV44 630 aa13.73□□□□□ -0.21
USP54-215ENST00000497106 TOP2AP11388 1531 aaKnown RBP13.72□□□□□ -0.21
USP54-215ENST00000497106 CHIC1Q5VXU3 224 aa13.68□□□□□ -0.22
USP54-215ENST00000497106 WIZO95785 1651 aa13.66□□□□□ -0.22
USP54-215ENST00000497106 ATAD2BQ9ULI0 1458 aa13.65□□□□□ -0.22
USP54-215ENST00000497106 EIF4G1Q04637 1599 aaKnown RBP13.62□□□□□ -0.23
USP54-215ENST00000497106 PEG3Q9GZU2 1588 aa13.57□□□□□ -0.24
USP54-215ENST00000497106 NCAPD3P42695 1498 aa13.56□□□□□ -0.24
USP54-215ENST00000497106 HMGXB3Q12766 1538 aa13.54□□□□□ -0.24
USP54-215ENST00000497106 CCDC88BA6NC98 1476 aa13.53□□□□□ -0.24
USP54-215ENST00000497106 FAM9AQ8IZU1 332 aaPredicted RBP13.39□□□□□ -0.27
USP54-215ENST00000497106 CC2D2AQ9P2K1 1620 aa13.39□□□□□ -0.27
USP54-215ENST00000497106 WRNQ14191 1432 aaPredicted RBP eCLIP13.35□□□□□ -0.27
USP54-215ENST00000497106 EEA1Q15075 1411 aa13.33□□□□□ -0.27
USP54-215ENST00000497106 CADPSQ9ULU8 1353 aa13.32□□□□□ -0.28
USP54-215ENST00000497106 PDS5BQ9NTI5 1447 aa13.26□□□□□ -0.29
USP54-215ENST00000497106 CFTRP13569 1480 aa13.24□□□□□ -0.29
USP54-215ENST00000497106 UBTFP17480 764 aaKnown RBP13.23□□□□□ -0.29
USP54-215ENST00000497106 CSRNP3Q8WYN3 585 aa13.2□□□□□ -0.3
USP54-215ENST00000497106 ABCC8Q09428 1581 aa13.19□□□□□ -0.3
USP54-215ENST00000497106 EHMT2Q96KQ7 1210 aa13.18□□□□□ -0.3
USP54-215ENST00000497106 APLP2Q06481 763 aa13.15□□□□□ -0.3
USP54-215ENST00000497106 CEP164Q9UPV0 1460 aa13.14□□□□□ -0.31
USP54-215ENST00000497106 FANCD2Q9BXW9 1451 aa13.14□□□□□ -0.31
USP54-215ENST00000497106 LAMC3Q9Y6N6 1575 aa13.13□□□□□ -0.31
USP54-215ENST00000497106 KIF27Q86VH2 1401 aa13.13□□□□□ -0.31
USP54-215ENST00000497106 LOC105371045A0A1W2PR82 267 aa13.1□□□□□ -0.31
USP54-215ENST00000497106 ERCC6Q03468 1493 aa13.09□□□□□ -0.31
USP54-215ENST00000497106 GOLGA3Q08378 1498 aa13.07□□□□□ -0.32
USP54-215ENST00000497106 TOP2BQ02880 1626 aa13.04□□□□□ -0.32
USP54-215ENST00000497106 PRDM2Q13029 1718 aa13□□□□□ -0.33
USP54-215ENST00000497106 CUX2O14529 1486 aa12.99□□□□□ -0.33
USP54-215ENST00000497106 SOGA1O94964 1423 aa12.99□□□□□ -0.33
USP54-215ENST00000497106 SYNJ1O43426 1573 aa12.99□□□□□ -0.33
USP54-215ENST00000497106 TNIKQ9UKE5 1360 aa12.98□□□□□ -0.33
USP54-215ENST00000497106 DNMBPQ6XZF7 1577 aa12.98□□□□□ -0.33
USP54-215ENST00000497106 BIVM-ERCC5R4GMW8 1640 aa12.96□□□□□ -0.33
USP54-215ENST00000497106 CUX1P39880 1505 aa12.95□□□□□ -0.34
USP54-215ENST00000497106 MRC2Q9UBG0 1479 aa12.95□□□□□ -0.34
USP54-215ENST00000497106 FGD5Q6ZNL6 1462 aa12.95□□□□□ -0.34
USP54-215ENST00000497106 NESP48681 1621 aa12.95□□□□□ -0.34
USP54-215ENST00000497106 TOPBP1Q92547 1522 aa12.92□□□□□ -0.34
USP54-215ENST00000497106 RANGAP1P46060 587 aaPredicted RBP12.91□□□□□ -0.34
USP54-215ENST00000497106 CARMIL1Q5VZK9 1371 aa12.88□□□□□ -0.35
USP54-215ENST00000497106 DNAJC5BQ9UF47 199 aa12.88□□□□□ -0.35
USP54-215ENST00000497106 KIF21BO75037 1637 aa12.86□□□□□ -0.35
USP54-215ENST00000497106 CEP162Q5TB80 1403 aa12.86□□□□□ -0.35
USP54-215ENST00000497106 CLIP1P30622 1438 aa12.86□□□□□ -0.35
USP54-215ENST00000497106 TRIM26Q12899 539 aaPredicted RBP12.84□□□□□ -0.35
USP54-215ENST00000497106 ERICH3Q5RHP9 1530 aa12.84□□□□□ -0.35
USP54-215ENST00000497106 RAPGEF2Q9Y4G8 1499 aa12.84□□□□□ -0.35
USP54-215ENST00000497106 POLA1P09884 1462 aaPredicted RBP12.84□□□□□ -0.35
USP54-215ENST00000497106 IFT140Q96RY7 1462 aa12.83□□□□□ -0.36
USP54-215ENST00000497106 ABCA10Q8WWZ4 1543 aa12.83□□□□□ -0.36
USP54-215ENST00000497106 RUSC2Q8N2Y8 1516 aa12.8□□□□□ -0.36
USP54-215ENST00000497106 GAPVD1Q14C86 1478 aa12.79□□□□□ -0.36
USP54-215ENST00000497106 URB2Q14146 1524 aaKnown RBP12.79□□□□□ -0.36
USP54-215ENST00000497106 RAD54L2Q9Y4B4 1467 aa12.78□□□□□ -0.36
USP54-215ENST00000497106 ATP1B4Q9UN42 357 aaPredicted RBP12.78□□□□□ -0.36
USP54-215ENST00000497106 IGF1RP08069 1367 aa12.78□□□□□ -0.36
USP54-215ENST00000497106 TDRD9Q8NDG6 1382 aaKnown RBP12.77□□□□□ -0.36
USP54-215ENST00000497106 CHMP7Q8WUX9 453 aaPredicted RBP12.76□□□□□ -0.37
USP54-215ENST00000497106 PCGF6Q9BYE7 350 aa12.76□□□□□ -0.37
USP54-215ENST00000497106 PRXQ9BXM0 1461 aa12.75□□□□□ -0.37
USP54-215ENST00000497106 FBLN2P98095 1184 aa12.74□□□□□ -0.37
USP54-215ENST00000497106 GRIN2BQ13224 1484 aa12.74□□□□□ -0.37
USP54-215ENST00000497106 CUL7Q14999 1698 aa12.73□□□□□ -0.37
USP54-215ENST00000497106 KIF21AQ7Z4S6 1674 aa12.72□□□□□ -0.37
USP54-215ENST00000497106 FHAD1B1AJZ9 1412 aa12.71□□□□□ -0.38
USP54-215ENST00000497106 WDR97A6NE52 1622 aa12.71□□□□□ -0.38
USP54-215ENST00000497106 WDR62O43379 1518 aa12.7□□□□□ -0.38
USP54-215ENST00000497106 VPS8Q8N3P4 1428 aa12.68□□□□□ -0.38
USP54-215ENST00000497106 TTBK1Q5TCY1 1321 aaPredicted RBP12.66□□□□□ -0.38
USP54-215ENST00000497106 ZEB1P37275 1124 aaPredicted RBP12.64□□□□□ -0.39
USP54-215ENST00000497106 FMN1Q68DA7 1419 aa12.62□□□□□ -0.39
USP54-215ENST00000497106 AQRO60306 1485 aaKnown RBP eCLIP12.62□□□□□ -0.392e-6■■■□□ 15.2
USP54-215ENST00000497106 CDK11AQ9UQ88 783 aaPredicted RBP12.62□□□□□ -0.39
USP54-215ENST00000497106 EFCAB5A4FU69 1503 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms