RNA–Protein interactions for RNA: ENST00000496116.1

CMSS1-208, Transcript of cms1 ribosomal small subunit homolog (yeast), humanhuman

TSL 1 (best)

Gene CMSS1, Length 2,145 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMSS1-208ENST00000496116 NISCHQ9Y2I1 1504 aa23.62■■□□□ 1.37
CMSS1-208ENST00000496116 CCDC180Q9P1Z9 1646 aa20.31■□□□□ 0.84
CMSS1-208ENST00000496116 ZCCHC6Q5VYS8 1495 aaKnown RBP19.95■□□□□ 0.78
CMSS1-208ENST00000496116 SHROOM4Q9ULL8 1493 aa19.75■□□□□ 0.75
CMSS1-208ENST00000496116 DCAF1Q9Y4B6 1507 aa19.49■□□□□ 0.71
CMSS1-208ENST00000496116 DCAF8L2P0C7V8 631 aa19.46■□□□□ 0.71
CMSS1-208ENST00000496116 SUPT5HO00267 1087 aaKnown RBP19.3■□□□□ 0.68
CMSS1-208ENST00000496116 MYO15BQ96JP2 1530 aa19.05■□□□□ 0.64
CMSS1-208ENST00000496116 SCRIBQ14160 1630 aa18.82■□□□□ 0.6
CMSS1-208ENST00000496116 NACADO15069 1562 aa18.8■□□□□ 0.6
CMSS1-208ENST00000496116 ABCC9O60706 1549 aa18.79■□□□□ 0.6
CMSS1-208ENST00000496116 CHIC1Q5VXU3 224 aa18.71■□□□□ 0.59
CMSS1-208ENST00000496116 RSF1Q96T23 1441 aaPredicted RBP18.55■□□□□ 0.56
CMSS1-208ENST00000496116 RB1CC1Q8TDY2 1594 aa18.53■□□□□ 0.56
CMSS1-208ENST00000496116 CECR2Q9BXF3 1484 aa18.32■□□□□ 0.52
CMSS1-208ENST00000496116 MROH2BQ7Z745 1585 aa18.28■□□□□ 0.52
CMSS1-208ENST00000496116 BAZ1AQ9NRL2 1556 aaPredicted RBP18.2■□□□□ 0.5
CMSS1-208ENST00000496116 UNC13AQ9UPW8 1703 aa18.18■□□□□ 0.5
CMSS1-208ENST00000496116 WIZO95785 1651 aa18.18■□□□□ 0.5
CMSS1-208ENST00000496116 TRIM41Q8WV44 630 aa18.08■□□□□ 0.49
CMSS1-208ENST00000496116 LOC105371045A0A1W2PR82 267 aa18.05■□□□□ 0.48
CMSS1-208ENST00000496116 SMARCA4P51532 1647 aa18.04■□□□□ 0.48
CMSS1-208ENST00000496116 TOP2AP11388 1531 aaKnown RBP17.98■□□□□ 0.47
CMSS1-208ENST00000496116 BICRAQ9NZM4 1560 aa17.94■□□□□ 0.46
CMSS1-208ENST00000496116 EIF4G1Q04637 1599 aaKnown RBP17.88■□□□□ 0.45
CMSS1-208ENST00000496116 PABPN1Q86U42 306 aaKnown RBP eCLIP17.86■□□□□ 0.45
CMSS1-208ENST00000496116 PCGF6Q9BYE7 350 aa17.84■□□□□ 0.45
CMSS1-208ENST00000496116 SMARCA2P51531 1590 aa17.83■□□□□ 0.44
CMSS1-208ENST00000496116 CCDC88BA6NC98 1476 aa17.82■□□□□ 0.44
CMSS1-208ENST00000496116 FAM9AQ8IZU1 332 aaPredicted RBP17.8■□□□□ 0.44
CMSS1-208ENST00000496116 PEG3Q9GZU2 1588 aa17.77■□□□□ 0.44
CMSS1-208ENST00000496116 HRCP23327 699 aa17.74■□□□□ 0.43
CMSS1-208ENST00000496116 TRIM26Q12899 539 aaPredicted RBP17.68■□□□□ 0.42
CMSS1-208ENST00000496116 ABCC8Q09428 1581 aa17.65■□□□□ 0.42
CMSS1-208ENST00000496116 ATAD2BQ9ULI0 1458 aa17.61■□□□□ 0.41
CMSS1-208ENST00000496116 BAZ1BQ9UIG0 1483 aaKnown RBP17.57■□□□□ 0.4
CMSS1-208ENST00000496116 EHMT2Q96KQ7 1210 aa17.56■□□□□ 0.4
CMSS1-208ENST00000496116 EEA1Q15075 1411 aa17.5■□□□□ 0.39
CMSS1-208ENST00000496116 WRNQ14191 1432 aaPredicted RBP eCLIP17.46■□□□□ 0.39
CMSS1-208ENST00000496116 SOGA1O94964 1423 aa17.43■□□□□ 0.38
CMSS1-208ENST00000496116 CSRNP3Q8WYN3 585 aa17.38■□□□□ 0.37
CMSS1-208ENST00000496116 HMGXB3Q12766 1538 aa17.37■□□□□ 0.37
CMSS1-208ENST00000496116 SYNJ1O43426 1573 aa17.35■□□□□ 0.37
CMSS1-208ENST00000496116 NCAPD3P42695 1498 aa17.35■□□□□ 0.37
CMSS1-208ENST00000496116 TNIKQ9UKE5 1360 aa17.34■□□□□ 0.37
CMSS1-208ENST00000496116 RUSC2Q8N2Y8 1516 aa17.32■□□□□ 0.36
CMSS1-208ENST00000496116 CEP162Q5TB80 1403 aa17.3■□□□□ 0.36
CMSS1-208ENST00000496116 GOLGA3Q08378 1498 aa17.29■□□□□ 0.36
CMSS1-208ENST00000496116 ZEB1P37275 1124 aaPredicted RBP17.27■□□□□ 0.36
CMSS1-208ENST00000496116 PPARGC1BQ86YN6 1023 aaKnown RBP17.26■□□□□ 0.35
CMSS1-208ENST00000496116 UBTFP17480 764 aaKnown RBP17.25■□□□□ 0.35
CMSS1-208ENST00000496116 TOP2BQ02880 1626 aa17.23■□□□□ 0.35
CMSS1-208ENST00000496116 CEP164Q9UPV0 1460 aa17.23■□□□□ 0.35
CMSS1-208ENST00000496116 KIF21BO75037 1637 aa17.23■□□□□ 0.35
CMSS1-208ENST00000496116 BIVM-ERCC5R4GMW8 1640 aa17.2■□□□□ 0.34
CMSS1-208ENST00000496116 CFTRP13569 1480 aa17.13■□□□□ 0.33
CMSS1-208ENST00000496116 PRDM2Q13029 1718 aa17.08■□□□□ 0.32
CMSS1-208ENST00000496116 RAPGEF2Q9Y4G8 1499 aa17.05■□□□□ 0.32
CMSS1-208ENST00000496116 CUX1P39880 1505 aa17.05■□□□□ 0.32
CMSS1-208ENST00000496116 CLIP1P30622 1438 aa17.04■□□□□ 0.32
CMSS1-208ENST00000496116 ERICH3Q5RHP9 1530 aa17.01■□□□□ 0.31
CMSS1-208ENST00000496116 CC2D2AQ9P2K1 1620 aa16.99■□□□□ 0.31
CMSS1-208ENST00000496116 KIF27Q86VH2 1401 aa16.98■□□□□ 0.31
CMSS1-208ENST00000496116 CADPSQ9ULU8 1353 aa16.97■□□□□ 0.31
CMSS1-208ENST00000496116 PRXQ9BXM0 1461 aa16.97■□□□□ 0.31
CMSS1-208ENST00000496116 VPS8Q8N3P4 1428 aa16.96■□□□□ 0.31
CMSS1-208ENST00000496116 TTBK1Q5TCY1 1321 aaPredicted RBP16.96■□□□□ 0.31
CMSS1-208ENST00000496116 CCER1Q8TC90 406 aaPredicted RBP16.91■□□□□ 0.3
CMSS1-208ENST00000496116 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.9■□□□□ 0.3
CMSS1-208ENST00000496116 APLP2Q06481 763 aa16.9■□□□□ 0.3
CMSS1-208ENST00000496116 RANGAP1P46060 587 aaPredicted RBP16.83■□□□□ 0.28
CMSS1-208ENST00000496116 CUX2O14529 1486 aa16.8■□□□□ 0.28
CMSS1-208ENST00000496116 FGD5Q6ZNL6 1462 aa16.8■□□□□ 0.28
CMSS1-208ENST00000496116 FANCD2Q9BXW9 1451 aa16.79■□□□□ 0.28
CMSS1-208ENST00000496116 ARAP1Q96P48 1450 aa16.78■□□□□ 0.28
CMSS1-208ENST00000496116 IGF1RP08069 1367 aa16.75■□□□□ 0.27
CMSS1-208ENST00000496116 DNMBPQ6XZF7 1577 aa16.73■□□□□ 0.27
CMSS1-208ENST00000496116 CARMIL1Q5VZK9 1371 aa16.7■□□□□ 0.26
CMSS1-208ENST00000496116 ARHGAP35Q9NRY4 1499 aa16.68■□□□□ 0.26
CMSS1-208ENST00000496116 LAMC3Q9Y6N6 1575 aa16.68■□□□□ 0.26
CMSS1-208ENST00000496116 TOPBP1Q92547 1522 aa16.66■□□□□ 0.26
CMSS1-208ENST00000496116 HNRNPUL2Q1KMD3 747 aaKnown RBP16.66■□□□□ 0.26
CMSS1-208ENST00000496116 NESP48681 1621 aa16.66■□□□□ 0.26
CMSS1-208ENST00000496116 ABCA10Q8WWZ4 1543 aa16.64■□□□□ 0.26
CMSS1-208ENST00000496116 POLA1P09884 1462 aaPredicted RBP16.63■□□□□ 0.25
CMSS1-208ENST00000496116 RAD54L2Q9Y4B4 1467 aa16.6■□□□□ 0.25
CMSS1-208ENST00000496116 KANK4Q5T7N3 995 aaPredicted RBP16.58■□□□□ 0.24
CMSS1-208ENST00000496116 CUL7Q14999 1698 aa16.57■□□□□ 0.24
CMSS1-208ENST00000496116 PDS5BQ9NTI5 1447 aa16.56■□□□□ 0.24
CMSS1-208ENST00000496116 MAP3K1Q13233 1512 aa16.54■□□□□ 0.24
CMSS1-208ENST00000496116 RRBP1Q9P2E9 1410 aaKnown RBP16.54■□□□□ 0.24
CMSS1-208ENST00000496116 URB2Q14146 1524 aaKnown RBP16.53■□□□□ 0.24
CMSS1-208ENST00000496116 WDR97A6NE52 1622 aa16.52■□□□□ 0.24
CMSS1-208ENST00000496116 FHAD1B1AJZ9 1412 aa16.52■□□□□ 0.24
CMSS1-208ENST00000496116 TIAM1Q13009 1591 aa16.5■□□□□ 0.23
CMSS1-208ENST00000496116 EFCAB5A4FU69 1503 aa16.48■□□□□ 0.23
CMSS1-208ENST00000496116 CTTNBP2Q8WZ74 1663 aa16.48■□□□□ 0.23
CMSS1-208ENST00000496116 CCNB3Q8WWL7 1395 aa16.47■□□□□ 0.23
CMSS1-208ENST00000496116 KIF21AQ7Z4S6 1674 aa16.46■□□□□ 0.22
CMSS1-208ENST00000496116 CLSPNQ9HAW4 1339 aa16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms