RNA–Protein interactions for RNA: ENST00000494284.6

PHF3-205, Transcript of PHD finger protein 3, humanhuman

TSL 2

Gene PHF3, Length 2,854 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHF3-205ENST00000494284 NISCHQ9Y2I1 1504 aa26.26■■□□□ 1.79
PHF3-205ENST00000494284 SHROOM4Q9ULL8 1493 aa22.69■■□□□ 1.22
PHF3-205ENST00000494284 CCDC180Q9P1Z9 1646 aa22.62■■□□□ 1.21
PHF3-205ENST00000494284 DCAF8L2P0C7V8 631 aa22.35■■□□□ 1.17
PHF3-205ENST00000494284 ZCCHC6Q5VYS8 1495 aaKnown RBP22.13■■□□□ 1.13
PHF3-205ENST00000494284 SUPT5HO00267 1087 aaKnown RBP22.06■■□□□ 1.12
PHF3-205ENST00000494284 DCAF1Q9Y4B6 1507 aa21.58■■□□□ 1.05
PHF3-205ENST00000494284 ABCC9O60706 1549 aa21.31■■□□□ 1
PHF3-205ENST00000494284 SCRIBQ14160 1630 aa21.19■□□□□ 0.98
PHF3-205ENST00000494284 MYO15BQ96JP2 1530 aa21.16■□□□□ 0.98
PHF3-205ENST00000494284 CHIC1Q5VXU3 224 aa21.11■□□□□ 0.97
PHF3-205ENST00000494284 NACADO15069 1562 aa21.01■□□□□ 0.95
PHF3-205ENST00000494284 RB1CC1Q8TDY2 1594 aa20.77■□□□□ 0.92
PHF3-205ENST00000494284 RSF1Q96T23 1441 aaPredicted RBP20.77■□□□□ 0.92
PHF3-205ENST00000494284 CECR2Q9BXF3 1484 aa20.73■□□□□ 0.91
PHF3-205ENST00000494284 LOC105371045A0A1W2PR82 267 aa20.71■□□□□ 0.91
PHF3-205ENST00000494284 EHMT2Q96KQ7 1210 aa20.55■□□□□ 0.88
PHF3-205ENST00000494284 MROH2BQ7Z745 1585 aa20.55■□□□□ 0.88
PHF3-205ENST00000494284 FAM9AQ8IZU1 332 aaPredicted RBP20.48■□□□□ 0.87
PHF3-205ENST00000494284 PCGF6Q9BYE7 350 aa20.47■□□□□ 0.87
PHF3-205ENST00000494284 PABPN1Q86U42 306 aaKnown RBP eCLIP20.46■□□□□ 0.87
PHF3-205ENST00000494284 UNC13AQ9UPW8 1703 aa20.45■□□□□ 0.86
PHF3-205ENST00000494284 WIZO95785 1651 aa20.45■□□□□ 0.86
PHF3-205ENST00000494284 TRIM41Q8WV44 630 aa20.37■□□□□ 0.85
PHF3-205ENST00000494284 BAZ1AQ9NRL2 1556 aaPredicted RBP20.21■□□□□ 0.83
PHF3-205ENST00000494284 BICRAQ9NZM4 1560 aa20.19■□□□□ 0.82
PHF3-205ENST00000494284 HRCP23327 699 aa20.15■□□□□ 0.82
PHF3-205ENST00000494284 PPARGC1BQ86YN6 1023 aaKnown RBP20.13■□□□□ 0.81
PHF3-205ENST00000494284 SMARCA4P51532 1647 aa20.1■□□□□ 0.81
PHF3-205ENST00000494284 ABCC8Q09428 1581 aa19.98■□□□□ 0.79
PHF3-205ENST00000494284 CCDC88BA6NC98 1476 aa19.98■□□□□ 0.79
PHF3-205ENST00000494284 TOP2AP11388 1531 aaKnown RBP19.93■□□□□ 0.78
PHF3-205ENST00000494284 SMARCA2P51531 1590 aa19.89■□□□□ 0.77
PHF3-205ENST00000494284 EIF4G1Q04637 1599 aaKnown RBP19.87■□□□□ 0.77
PHF3-205ENST00000494284 TRIM26Q12899 539 aaPredicted RBP19.77■□□□□ 0.75
PHF3-205ENST00000494284 PEG3Q9GZU2 1588 aa19.76■□□□□ 0.75
PHF3-205ENST00000494284 TTBK1Q5TCY1 1321 aaPredicted RBP19.75■□□□□ 0.75
PHF3-205ENST00000494284 SOGA1O94964 1423 aa19.72■□□□□ 0.75
PHF3-205ENST00000494284 RUSC2Q8N2Y8 1516 aa19.71■□□□□ 0.75
PHF3-205ENST00000494284 ATAD2BQ9ULI0 1458 aa19.68■□□□□ 0.74
PHF3-205ENST00000494284 BAZ1BQ9UIG0 1483 aaKnown RBP19.61■□□□□ 0.73
PHF3-205ENST00000494284 RANGAP1P46060 587 aaPredicted RBP19.51■□□□□ 0.71
PHF3-205ENST00000494284 UBTFP17480 764 aaKnown RBP19.5■□□□□ 0.71
PHF3-205ENST00000494284 WRNQ14191 1432 aaPredicted RBP eCLIP19.49■□□□□ 0.71
PHF3-205ENST00000494284 SYNJ1O43426 1573 aa19.48■□□□□ 0.71
PHF3-205ENST00000494284 CSRNP3Q8WYN3 585 aa19.46■□□□□ 0.71
PHF3-205ENST00000494284 NCAPD3P42695 1498 aa19.41■□□□□ 0.7
PHF3-205ENST00000494284 HMGXB3Q12766 1538 aa19.39■□□□□ 0.69
PHF3-205ENST00000494284 CEP162Q5TB80 1403 aa19.38■□□□□ 0.69
PHF3-205ENST00000494284 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.31■□□□□ 0.68
PHF3-205ENST00000494284 TNIKQ9UKE5 1360 aa19.24■□□□□ 0.67
PHF3-205ENST00000494284 CC2D2AQ9P2K1 1620 aa19.2■□□□□ 0.66
PHF3-205ENST00000494284 RAPGEF2Q9Y4G8 1499 aa19.2■□□□□ 0.66
PHF3-205ENST00000494284 GOLGA3Q08378 1498 aa19.19■□□□□ 0.66
PHF3-205ENST00000494284 EEA1Q15075 1411 aa19.15■□□□□ 0.66
PHF3-205ENST00000494284 CCER1Q8TC90 406 aaPredicted RBP19.15■□□□□ 0.66
PHF3-205ENST00000494284 ZEB1P37275 1124 aaPredicted RBP19.14■□□□□ 0.65
PHF3-205ENST00000494284 CUX1P39880 1505 aa19.11■□□□□ 0.65
PHF3-205ENST00000494284 TOP2BQ02880 1626 aa19.1■□□□□ 0.65
PHF3-205ENST00000494284 CFTRP13569 1480 aa19.1■□□□□ 0.65
PHF3-205ENST00000494284 CEP164Q9UPV0 1460 aa19.09■□□□□ 0.65
PHF3-205ENST00000494284 DNAJC5BQ9UF47 199 aa19.07■□□□□ 0.64
PHF3-205ENST00000494284 CLIP1P30622 1438 aa19.06■□□□□ 0.64
PHF3-205ENST00000494284 BIVM-ERCC5R4GMW8 1640 aa19.04■□□□□ 0.64
PHF3-205ENST00000494284 HNRNPUL2Q1KMD3 747 aaKnown RBP19.02■□□□□ 0.63
PHF3-205ENST00000494284 KIF21BO75037 1637 aa19.01■□□□□ 0.63
PHF3-205ENST00000494284 PRDM2Q13029 1718 aa19■□□□□ 0.63
PHF3-205ENST00000494284 CADPSQ9ULU8 1353 aa18.98■□□□□ 0.63
PHF3-205ENST00000494284 NESP48681 1621 aa18.94■□□□□ 0.62
PHF3-205ENST00000494284 PRXQ9BXM0 1461 aa18.87■□□□□ 0.61
PHF3-205ENST00000494284 VPS8Q8N3P4 1428 aa18.87■□□□□ 0.61
PHF3-205ENST00000494284 CUX2O14529 1486 aa18.86■□□□□ 0.61
PHF3-205ENST00000494284 KIF27Q86VH2 1401 aa18.86■□□□□ 0.61
PHF3-205ENST00000494284 APLP2Q06481 763 aa18.85■□□□□ 0.61
PHF3-205ENST00000494284 KANK4Q5T7N3 995 aaPredicted RBP18.85■□□□□ 0.61
PHF3-205ENST00000494284 FGD5Q6ZNL6 1462 aa18.82■□□□□ 0.6
PHF3-205ENST00000494284 P3H3Q8IVL6 736 aa18.8■□□□□ 0.6
PHF3-205ENST00000494284 ARAP1Q96P48 1450 aa18.8■□□□□ 0.6
PHF3-205ENST00000494284 FANCD2Q9BXW9 1451 aa18.8■□□□□ 0.6
PHF3-205ENST00000494284 RAD54L2Q9Y4B4 1467 aa18.79■□□□□ 0.6
PHF3-205ENST00000494284 IGF1RP08069 1367 aa18.77■□□□□ 0.6
PHF3-205ENST00000494284 ERICH3Q5RHP9 1530 aa18.72■□□□□ 0.59
PHF3-205ENST00000494284 ITGAEP38570 1179 aa18.71■□□□□ 0.59
PHF3-205ENST00000494284 SCAF1Q9H7N4 1312 aaKnown RBP18.7■□□□□ 0.58
PHF3-205ENST00000494284 LAMC3Q9Y6N6 1575 aa18.69■□□□□ 0.58
PHF3-205ENST00000494284 ARHGAP35Q9NRY4 1499 aa18.68■□□□□ 0.58
PHF3-205ENST00000494284 ATP1B4Q9UN42 357 aaPredicted RBP18.68■□□□□ 0.58
PHF3-205ENST00000494284 DIEXFQ68CQ4 756 aaKnown RBP18.68■□□□□ 0.58
PHF3-205ENST00000494284 CARMIL1Q5VZK9 1371 aa18.67■□□□□ 0.58
PHF3-205ENST00000494284 DNMBPQ6XZF7 1577 aa18.65■□□□□ 0.58
PHF3-205ENST00000494284 TOPBP1Q92547 1522 aa18.63■□□□□ 0.57
PHF3-205ENST00000494284 POLA1P09884 1462 aaPredicted RBP18.62■□□□□ 0.57
PHF3-205ENST00000494284 TDRD9Q8NDG6 1382 aaKnown RBP18.6■□□□□ 0.57
PHF3-205ENST00000494284 URB2Q14146 1524 aaKnown RBP18.56■□□□□ 0.56
PHF3-205ENST00000494284 YTHDC1Q96MU7 727 aaKnown RBP18.56■□□□□ 0.56
PHF3-205ENST00000494284 PDS5BQ9NTI5 1447 aa18.55■□□□□ 0.56
PHF3-205ENST00000494284 NEUROD1Q13562 356 aa18.55■□□□□ 0.56
PHF3-205ENST00000494284 KIF21AQ7Z4S6 1674 aa18.53■□□□□ 0.56
PHF3-205ENST00000494284 ABCA10Q8WWZ4 1543 aa18.51■□□□□ 0.55
PHF3-205ENST00000494284 FHOD3Q2V2M9 1422 aa18.5■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 128.9 ms