RNA–Protein interactions for RNA: ENST00000493711.1

SNX17-208, Transcript of sorting nexin 17, humanhuman

TSL 3

Gene SNX17, Length 583 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX17-208ENST00000493711 AEBP2Q6ZN18 517 aaPredicted RBP30.23■■■□□ 2.43
SNX17-208ENST00000493711 NISCHQ9Y2I1 1504 aa29.15■■■□□ 2.26
SNX17-208ENST00000493711 CHIC1Q5VXU3 224 aa28.91■■■□□ 2.22
SNX17-208ENST00000493711 CCDC180Q9P1Z9 1646 aa25.68■■□□□ 1.7
SNX17-208ENST00000493711 SENP3Q9H4L4 574 aaPredicted RBP25.54■■□□□ 1.68
SNX17-208ENST00000493711 PHF23Q9BUL5 403 aaPredicted RBP25.48■■□□□ 1.67
SNX17-208ENST00000493711 ABCC9O60706 1549 aa24.81■■□□□ 1.56
SNX17-208ENST00000493711 ZCCHC6Q5VYS8 1495 aaKnown RBP24.38■■□□□ 1.49
SNX17-208ENST00000493711 DCAF1Q9Y4B6 1507 aa24.21■■□□□ 1.47
SNX17-208ENST00000493711 DCAF8L2P0C7V8 631 aa24.2■■□□□ 1.46
SNX17-208ENST00000493711 MYO15BQ96JP2 1530 aa24.17■■□□□ 1.46
SNX17-208ENST00000493711 NACADO15069 1562 aa24.11■■□□□ 1.45
SNX17-208ENST00000493711 RB1CC1Q8TDY2 1594 aa24.01■■□□□ 1.43
SNX17-208ENST00000493711 FOXD1Q16676 465 aa23.9■■□□□ 1.42
SNX17-208ENST00000493711 DNAJC5BQ9UF47 199 aa23.89■■□□□ 1.41
SNX17-208ENST00000493711 SCRIBQ14160 1630 aa23.41■■□□□ 1.34
SNX17-208ENST00000493711 SHROOM4Q9ULL8 1493 aa23.24■■□□□ 1.31
SNX17-208ENST00000493711 UNC13AQ9UPW8 1703 aa23.2■■□□□ 1.3
SNX17-208ENST00000493711 PLPPR3Q6T4P5 718 aa23.19■■□□□ 1.3
SNX17-208ENST00000493711 PABPN1Q86U42 306 aaKnown RBP eCLIP23.17■■□□□ 1.3
SNX17-208ENST00000493711 BICRAQ9NZM4 1560 aa23.17■■□□□ 1.3
SNX17-208ENST00000493711 PPP6R1Q9UPN7 881 aa22.68■■□□□ 1.22
SNX17-208ENST00000493711 ADRA2BP18089 450 aa22.62■■□□□ 1.21
SNX17-208ENST00000493711 CECR2Q9BXF3 1484 aa22.6■■□□□ 1.21
SNX17-208ENST00000493711 BAZ1AQ9NRL2 1556 aaPredicted RBP22.59■■□□□ 1.21
SNX17-208ENST00000493711 EIF4G1Q04637 1599 aaKnown RBP22.56■■□□□ 1.2
SNX17-208ENST00000493711 SMARCA4P51532 1647 aa22.47■■□□□ 1.19
SNX17-208ENST00000493711 MROH2BQ7Z745 1585 aa22.43■■□□□ 1.18
SNX17-208ENST00000493711 RSF1Q96T23 1441 aaPredicted RBP22.4■■□□□ 1.18
SNX17-208ENST00000493711 DNAJC5Q9H3Z4 198 aa22.4■■□□□ 1.18
SNX17-208ENST00000493711 PIAS4Q8N2W9 510 aaPredicted RBP22.39■■□□□ 1.17
SNX17-208ENST00000493711 SMARCA2P51531 1590 aa22.33■■□□□ 1.16
SNX17-208ENST00000493711 CC2D2AQ9P2K1 1620 aa22.32■■□□□ 1.16
SNX17-208ENST00000493711 PEG3Q9GZU2 1588 aa22.3■■□□□ 1.16
SNX17-208ENST00000493711 ATAD2BQ9ULI0 1458 aa22.3■■□□□ 1.16
SNX17-208ENST00000493711 NCAPD3P42695 1498 aa22.27■■□□□ 1.16
SNX17-208ENST00000493711 SUPT5HO00267 1087 aaKnown RBP22.17■■□□□ 1.14
SNX17-208ENST00000493711 HMGXB3Q12766 1538 aa22.16■■□□□ 1.14
SNX17-208ENST00000493711 BAZ1BQ9UIG0 1483 aaKnown RBP22.15■■□□□ 1.14
SNX17-208ENST00000493711 WIZO95785 1651 aa22.14■■□□□ 1.13
SNX17-208ENST00000493711 MSH5O43196 834 aa22.07■■□□□ 1.12
SNX17-208ENST00000493711 TOP2AP11388 1531 aaKnown RBP22.05■■□□□ 1.12
SNX17-208ENST00000493711 CCDC88BA6NC98 1476 aa21.78■■□□□ 1.08
SNX17-208ENST00000493711 CADPSQ9ULU8 1353 aa21.65■■□□□ 1.06
SNX17-208ENST00000493711 CUX2O14529 1486 aa21.63■■□□□ 1.05
SNX17-208ENST00000493711 CFTRP13569 1480 aa21.59■■□□□ 1.05
SNX17-208ENST00000493711 LAMC3Q9Y6N6 1575 aa21.56■■□□□ 1.04
SNX17-208ENST00000493711 PDS5BQ9NTI5 1447 aa21.48■■□□□ 1.03
SNX17-208ENST00000493711 ERCC6Q03468 1493 aa21.46■■□□□ 1.03
SNX17-208ENST00000493711 NESP48681 1621 aa21.46■■□□□ 1.03
SNX17-208ENST00000493711 FANCD2Q9BXW9 1451 aa21.35■■□□□ 1.01
SNX17-208ENST00000493711 CEP164Q9UPV0 1460 aa21.3■■□□□ 1
SNX17-208ENST00000493711 PRDM2Q13029 1718 aa21.26■□□□□ 0.99
SNX17-208ENST00000493711 MRC2Q9UBG0 1479 aa21.18■□□□□ 0.98
SNX17-208ENST00000493711 ABCC8Q09428 1581 aa21.18■□□□□ 0.98
SNX17-208ENST00000493711 TRIM41Q8WV44 630 aa21.14■□□□□ 0.97
SNX17-208ENST00000493711 KIF21AQ7Z4S6 1674 aa21.14■□□□□ 0.97
SNX17-208ENST00000493711 WRNQ14191 1432 aaPredicted RBP eCLIP21.13■□□□□ 0.97
SNX17-208ENST00000493711 POTEDQ86YR6 584 aa21.11■□□□□ 0.97
SNX17-208ENST00000493711 URB2Q14146 1524 aaKnown RBP21.07■□□□□ 0.96
SNX17-208ENST00000493711 DNMBPQ6XZF7 1577 aa21.06■□□□□ 0.96
SNX17-208ENST00000493711 WDR62O43379 1518 aa21.05■□□□□ 0.96
SNX17-208ENST00000493711 TOPBP1Q92547 1522 aa21.04■□□□□ 0.96
SNX17-208ENST00000493711 THOC2Q8NI27 1593 aaKnown RBP21.03■□□□□ 0.96
SNX17-208ENST00000493711 CUX1P39880 1505 aa21.02■□□□□ 0.96
SNX17-208ENST00000493711 TOP2BQ02880 1626 aa20.98■□□□□ 0.95
SNX17-208ENST00000493711 SYNJ1O43426 1573 aa20.93■□□□□ 0.94
SNX17-208ENST00000493711 BIVM-ERCC5R4GMW8 1640 aa20.93■□□□□ 0.94
SNX17-208ENST00000493711 FGD5Q6ZNL6 1462 aa20.9■□□□□ 0.94
SNX17-208ENST00000493711 POLA1P09884 1462 aaPredicted RBP20.89■□□□□ 0.94
SNX17-208ENST00000493711 IFT140Q96RY7 1462 aa20.87■□□□□ 0.93
SNX17-208ENST00000493711 SOGA1O94964 1423 aa20.87■□□□□ 0.93
SNX17-208ENST00000493711 ABCA10Q8WWZ4 1543 aa20.77■□□□□ 0.92
SNX17-208ENST00000493711 RAD54L2Q9Y4B4 1467 aa20.76■□□□□ 0.91
SNX17-208ENST00000493711 TARBP1Q13395 1621 aaKnown RBP20.72■□□□□ 0.91
SNX17-208ENST00000493711 MAPK8IP2Q13387 824 aaPredicted RBP20.71■□□□□ 0.91
SNX17-208ENST00000493711 KIF27Q86VH2 1401 aa20.7■□□□□ 0.9
SNX17-208ENST00000493711 WDR97A6NE52 1622 aa20.69■□□□□ 0.9
SNX17-208ENST00000493711 TDRD9Q8NDG6 1382 aaKnown RBP20.66■□□□□ 0.9
SNX17-208ENST00000493711 EEA1Q15075 1411 aa20.65■□□□□ 0.9
SNX17-208ENST00000493711 OSCARQ8IYS5 282 aa20.63■□□□□ 0.89
SNX17-208ENST00000493711 ZNF608Q9ULD9 1512 aaPredicted RBP20.63■□□□□ 0.89
SNX17-208ENST00000493711 GAPVD1Q14C86 1478 aa20.62■□□□□ 0.89
SNX17-208ENST00000493711 AQRO60306 1485 aaKnown RBP eCLIP20.61■□□□□ 0.893e-7■■■■■ 31
SNX17-208ENST00000493711 GRIN2BQ13224 1484 aa20.58■□□□□ 0.89
SNX17-208ENST00000493711 ABCA5Q8WWZ7 1642 aa20.56■□□□□ 0.88
SNX17-208ENST00000493711 EIF4G3O43432 1585 aaKnown RBP20.55■□□□□ 0.88
SNX17-208ENST00000493711 ERICH3Q5RHP9 1530 aa20.53■□□□□ 0.88
SNX17-208ENST00000493711 IGF1RP08069 1367 aa20.52■□□□□ 0.88
SNX17-208ENST00000493711 CSRNP3Q8WYN3 585 aa20.51■□□□□ 0.87
SNX17-208ENST00000493711 RUSC2Q8N2Y8 1516 aa20.48■□□□□ 0.87
SNX17-208ENST00000493711 MAGI1Q96QZ7 1491 aaPredicted RBP20.48■□□□□ 0.87
SNX17-208ENST00000493711 PPP4R3CPQ6ZMV5 832 aa20.46■□□□□ 0.87
SNX17-208ENST00000493711 FAM9AQ8IZU1 332 aaPredicted RBP20.44■□□□□ 0.86
SNX17-208ENST00000493711 SCAF1Q9H7N4 1312 aaKnown RBP20.44■□□□□ 0.86
SNX17-208ENST00000493711 FHAD1B1AJZ9 1412 aa20.44■□□□□ 0.86
SNX17-208ENST00000493711 CARMIL1Q5VZK9 1371 aa20.43■□□□□ 0.86
SNX17-208ENST00000493711 SNAPC4Q5SXM2 1469 aa20.43■□□□□ 0.86
SNX17-208ENST00000493711 CUL7Q14999 1698 aa20.38■□□□□ 0.85
SNX17-208ENST00000493711 PBRM1Q86U86 1689 aa20.38■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms