RNA–Protein interactions for RNA: ENST00000491729.1

LSS-210, Transcript of lanosterol synthase, humanhuman

TSL 2

Gene LSS, Length 2,143 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSS-210ENST00000491729 NISCHQ9Y2I1 1504 aa29.73■■■□□ 2.35
LSS-210ENST00000491729 CCDC180Q9P1Z9 1646 aa25.89■■□□□ 1.74
LSS-210ENST00000491729 ABCC9O60706 1549 aa24.96■■□□□ 1.59
LSS-210ENST00000491729 ZCCHC6Q5VYS8 1495 aaKnown RBP24.9■■□□□ 1.58
LSS-210ENST00000491729 DCAF8L2P0C7V8 631 aa24.77■■□□□ 1.56
LSS-210ENST00000491729 DCAF1Q9Y4B6 1507 aa24.47■■□□□ 1.51
LSS-210ENST00000491729 MYO15BQ96JP2 1530 aa24.25■■□□□ 1.47
LSS-210ENST00000491729 SHROOM4Q9ULL8 1493 aa24.24■■□□□ 1.47
LSS-210ENST00000491729 NACADO15069 1562 aa24.22■■□□□ 1.47
LSS-210ENST00000491729 RB1CC1Q8TDY2 1594 aa24.07■■□□□ 1.44
LSS-210ENST00000491729 SCRIBQ14160 1630 aa23.94■■□□□ 1.42
LSS-210ENST00000491729 UNC13AQ9UPW8 1703 aa23.7■■□□□ 1.39
LSS-210ENST00000491729 PABPN1Q86U42 306 aaKnown RBP eCLIP23.57■■□□□ 1.361e-7■□□□□ 8.7
LSS-210ENST00000491729 BICRAQ9NZM4 1560 aa23.52■■□□□ 1.36
LSS-210ENST00000491729 CECR2Q9BXF3 1484 aa23.27■■□□□ 1.32
LSS-210ENST00000491729 SUPT5HO00267 1087 aaKnown RBP23.15■■□□□ 1.3
LSS-210ENST00000491729 MROH2BQ7Z745 1585 aa23.04■■□□□ 1.28
LSS-210ENST00000491729 RSF1Q96T23 1441 aaPredicted RBP23.03■■□□□ 1.28
LSS-210ENST00000491729 BAZ1AQ9NRL2 1556 aaPredicted RBP22.9■■□□□ 1.26
LSS-210ENST00000491729 SMARCA4P51532 1647 aa22.88■■□□□ 1.25
LSS-210ENST00000491729 WIZO95785 1651 aa22.82■■□□□ 1.24
LSS-210ENST00000491729 EIF4G1Q04637 1599 aaKnown RBP22.77■■□□□ 1.23
LSS-210ENST00000491729 ATAD2BQ9ULI0 1458 aa22.62■■□□□ 1.21
LSS-210ENST00000491729 PEG3Q9GZU2 1588 aa22.58■■□□□ 1.21
LSS-210ENST00000491729 CC2D2AQ9P2K1 1620 aa22.52■■□□□ 1.2
LSS-210ENST00000491729 SMARCA2P51531 1590 aa22.48■■□□□ 1.19
LSS-210ENST00000491729 DNAJC5BQ9UF47 199 aa22.46■■□□□ 1.19
LSS-210ENST00000491729 TOP2AP11388 1531 aaKnown RBP22.46■■□□□ 1.19
LSS-210ENST00000491729 NCAPD3P42695 1498 aa22.44■■□□□ 1.18
LSS-210ENST00000491729 BAZ1BQ9UIG0 1483 aaKnown RBP22.42■■□□□ 1.18
LSS-210ENST00000491729 CCDC88BA6NC98 1476 aa22.34■■□□□ 1.17
LSS-210ENST00000491729 HMGXB3Q12766 1538 aa22.31■■□□□ 1.16
LSS-210ENST00000491729 CHIC1Q5VXU3 224 aa22.02■■□□□ 1.12
LSS-210ENST00000491729 CFTRP13569 1480 aa21.88■■□□□ 1.09
LSS-210ENST00000491729 NESP48681 1621 aa21.88■■□□□ 1.09
LSS-210ENST00000491729 CADPSQ9ULU8 1353 aa21.87■■□□□ 1.09
LSS-210ENST00000491729 ABCC8Q09428 1581 aa21.82■■□□□ 1.08
LSS-210ENST00000491729 TRIM41Q8WV44 630 aa21.69■■□□□ 1.06
LSS-210ENST00000491729 LAMC3Q9Y6N6 1575 aa21.64■■□□□ 1.05
LSS-210ENST00000491729 WRNQ14191 1432 aaPredicted RBP eCLIP21.61■■□□□ 1.054e-8■■■□□ 14.6
LSS-210ENST00000491729 FANCD2Q9BXW9 1451 aa21.61■■□□□ 1.05
LSS-210ENST00000491729 PRDM2Q13029 1718 aa21.61■■□□□ 1.05
LSS-210ENST00000491729 SYNJ1O43426 1573 aa21.59■■□□□ 1.05
LSS-210ENST00000491729 CUX1P39880 1505 aa21.53■■□□□ 1.04
LSS-210ENST00000491729 KIF21AQ7Z4S6 1674 aa21.5■■□□□ 1.03
LSS-210ENST00000491729 PDS5BQ9NTI5 1447 aa21.5■■□□□ 1.03
LSS-210ENST00000491729 CEP164Q9UPV0 1460 aa21.45■■□□□ 1.02
LSS-210ENST00000491729 TOP2BQ02880 1626 aa21.44■■□□□ 1.02
LSS-210ENST00000491729 URB2Q14146 1524 aaKnown RBP21.42■■□□□ 1.02
LSS-210ENST00000491729 FAM9AQ8IZU1 332 aaPredicted RBP21.42■■□□□ 1.02
LSS-210ENST00000491729 BIVM-ERCC5R4GMW8 1640 aa21.4■■□□□ 1.02
LSS-210ENST00000491729 SOGA1O94964 1423 aa21.38■■□□□ 1.01
LSS-210ENST00000491729 RUSC2Q8N2Y8 1516 aa21.37■■□□□ 1.01
LSS-210ENST00000491729 TOPBP1Q92547 1522 aa21.36■■□□□ 1.01
LSS-210ENST00000491729 DNMBPQ6XZF7 1577 aa21.31■■□□□ 1
LSS-210ENST00000491729 FGD5Q6ZNL6 1462 aa21.31■■□□□ 1
LSS-210ENST00000491729 ERCC6Q03468 1493 aa21.3■■□□□ 1
LSS-210ENST00000491729 LOC105371045A0A1W2PR82 267 aa21.28■■□□□ 1
LSS-210ENST00000491729 MRC2Q9UBG0 1479 aa21.26■□□□□ 0.99
LSS-210ENST00000491729 RAD54L2Q9Y4B4 1467 aa21.26■□□□□ 0.99
LSS-210ENST00000491729 POLA1P09884 1462 aaPredicted RBP21.25■□□□□ 0.99
LSS-210ENST00000491729 EHMT2Q96KQ7 1210 aa21.21■□□□□ 0.99
LSS-210ENST00000491729 THOC2Q8NI27 1593 aaKnown RBP21.19■□□□□ 0.98
LSS-210ENST00000491729 WDR62O43379 1518 aa21.16■□□□□ 0.98
LSS-210ENST00000491729 CUX2O14529 1486 aa21.16■□□□□ 0.98
LSS-210ENST00000491729 CSRNP3Q8WYN3 585 aa21.11■□□□□ 0.97
LSS-210ENST00000491729 HRCP23327 699 aa21.09■□□□□ 0.97
LSS-210ENST00000491729 TDRD9Q8NDG6 1382 aaKnown RBP21.08■□□□□ 0.97
LSS-210ENST00000491729 ABCA10Q8WWZ4 1543 aa21.07■□□□□ 0.96
LSS-210ENST00000491729 TARBP1Q13395 1621 aaKnown RBP21.07■□□□□ 0.96
LSS-210ENST00000491729 KIF27Q86VH2 1401 aa21.04■□□□□ 0.96
LSS-210ENST00000491729 PCGF6Q9BYE7 350 aa21.02■□□□□ 0.96
LSS-210ENST00000491729 EEA1Q15075 1411 aa21.02■□□□□ 0.96
LSS-210ENST00000491729 IGF1RP08069 1367 aa21.01■□□□□ 0.95
LSS-210ENST00000491729 ZNF608Q9ULD9 1512 aaPredicted RBP21.01■□□□□ 0.95
LSS-210ENST00000491729 WDR97A6NE52 1622 aa21.01■□□□□ 0.95
LSS-210ENST00000491729 AQRO60306 1485 aaKnown RBP eCLIP20.98■□□□□ 0.955e-9■■■■■ 29.1
LSS-210ENST00000491729 IFT140Q96RY7 1462 aa20.94■□□□□ 0.94
LSS-210ENST00000491729 ABCA5Q8WWZ7 1642 aa20.92■□□□□ 0.94
LSS-210ENST00000491729 RAPGEF2Q9Y4G8 1499 aa20.91■□□□□ 0.94
LSS-210ENST00000491729 GAPVD1Q14C86 1478 aa20.91■□□□□ 0.94
LSS-210ENST00000491729 PRXQ9BXM0 1461 aa20.91■□□□□ 0.94
LSS-210ENST00000491729 TRIM26Q12899 539 aaPredicted RBP20.85■□□□□ 0.93
LSS-210ENST00000491729 CARMIL1Q5VZK9 1371 aa20.84■□□□□ 0.93
LSS-210ENST00000491729 KIF21BO75037 1637 aa20.83■□□□□ 0.92
LSS-210ENST00000491729 UBTFP17480 764 aaKnown RBP20.81■□□□□ 0.92
LSS-210ENST00000491729 EIF4G3O43432 1585 aaKnown RBP20.8■□□□□ 0.92
LSS-210ENST00000491729 GOLGA3Q08378 1498 aa20.79■□□□□ 0.92
LSS-210ENST00000491729 ERICH3Q5RHP9 1530 aa20.77■□□□□ 0.92
LSS-210ENST00000491729 PBRM1Q86U86 1689 aa20.75■□□□□ 0.91
LSS-210ENST00000491729 GRIN2BQ13224 1484 aa20.75■□□□□ 0.91
LSS-210ENST00000491729 TNIKQ9UKE5 1360 aa20.72■□□□□ 0.91
LSS-210ENST00000491729 SNAPC4Q5SXM2 1469 aa20.7■□□□□ 0.9
LSS-210ENST00000491729 RANGAP1P46060 587 aaPredicted RBP20.69■□□□□ 0.9
LSS-210ENST00000491729 CUL7Q14999 1698 aa20.67■□□□□ 0.9
LSS-210ENST00000491729 ADAMTS12P58397 1594 aa20.65■□□□□ 0.9
LSS-210ENST00000491729 FHAD1B1AJZ9 1412 aa20.65■□□□□ 0.9
LSS-210ENST00000491729 CEP162Q5TB80 1403 aa20.63■□□□□ 0.89
LSS-210ENST00000491729 FBLN2P98095 1184 aa20.59■□□□□ 0.89
LSS-210ENST00000491729 MAGI1Q96QZ7 1491 aaPredicted RBP20.57■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms