RNA–Protein interactions for RNA: ENST00000490851.5

HDAC9-225, Transcript of histone deacetylase 9, humanhuman

TSL 2

Gene HDAC9, Length 2,419 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-225ENST00000490851 NISCHQ9Y2I1 1504 aa22.42■■□□□ 1.18
HDAC9-225ENST00000490851 CCDC180Q9P1Z9 1646 aa19.42■□□□□ 0.7
HDAC9-225ENST00000490851 ZCCHC6Q5VYS8 1495 aaKnown RBP18.84■□□□□ 0.61
HDAC9-225ENST00000490851 DCAF8L2P0C7V8 631 aa18.77■□□□□ 0.6
HDAC9-225ENST00000490851 SHROOM4Q9ULL8 1493 aa18.62■□□□□ 0.57
HDAC9-225ENST00000490851 ABCC9O60706 1549 aa18.52■□□□□ 0.56
HDAC9-225ENST00000490851 DCAF1Q9Y4B6 1507 aa18.41■□□□□ 0.54
HDAC9-225ENST00000490851 MYO15BQ96JP2 1530 aa18.13■□□□□ 0.49
HDAC9-225ENST00000490851 NACADO15069 1562 aa18.09■□□□□ 0.49
HDAC9-225ENST00000490851 SCRIBQ14160 1630 aa18.07■□□□□ 0.48
HDAC9-225ENST00000490851 RB1CC1Q8TDY2 1594 aa17.96■□□□□ 0.47
HDAC9-225ENST00000490851 SUPT5HO00267 1087 aaKnown RBP17.94■□□□□ 0.46
HDAC9-225ENST00000490851 UNC13AQ9UPW8 1703 aa17.64■□□□□ 0.41
HDAC9-225ENST00000490851 PABPN1Q86U42 306 aaKnown RBP eCLIP17.55■□□□□ 0.4
HDAC9-225ENST00000490851 CECR2Q9BXF3 1484 aa17.51■□□□□ 0.39
HDAC9-225ENST00000490851 RSF1Q96T23 1441 aaPredicted RBP17.47■□□□□ 0.39
HDAC9-225ENST00000490851 BICRAQ9NZM4 1560 aa17.44■□□□□ 0.38
HDAC9-225ENST00000490851 MROH2BQ7Z745 1585 aa17.39■□□□□ 0.37
HDAC9-225ENST00000490851 BAZ1AQ9NRL2 1556 aaPredicted RBP17.29■□□□□ 0.36
HDAC9-225ENST00000490851 WIZO95785 1651 aa17.27■□□□□ 0.36
HDAC9-225ENST00000490851 SMARCA4P51532 1647 aa17.23■□□□□ 0.35
HDAC9-225ENST00000490851 CHIC1Q5VXU3 224 aa17.1■□□□□ 0.33
HDAC9-225ENST00000490851 TOP2AP11388 1531 aaKnown RBP17.01■□□□□ 0.31
HDAC9-225ENST00000490851 MYT1Q01538 1121 aa16.95■□□□□ 0.3
HDAC9-225ENST00000490851 ATAD2BQ9ULI0 1458 aa16.93■□□□□ 0.3
HDAC9-225ENST00000490851 EIF4G1Q04637 1599 aaKnown RBP16.93■□□□□ 0.3
HDAC9-225ENST00000490851 PELP1Q8IZL8 1130 aaKnown RBP16.92■□□□□ 0.3
HDAC9-225ENST00000490851 PEG3Q9GZU2 1588 aa16.92■□□□□ 0.3
HDAC9-225ENST00000490851 CCDC88BA6NC98 1476 aa16.89■□□□□ 0.29
HDAC9-225ENST00000490851 SMARCA2P51531 1590 aa16.88■□□□□ 0.29
HDAC9-225ENST00000490851 BAZ1BQ9UIG0 1483 aaKnown RBP16.87■□□□□ 0.29
HDAC9-225ENST00000490851 TRIM41Q8WV44 630 aa16.77■□□□□ 0.28
HDAC9-225ENST00000490851 NCAPD3P42695 1498 aa16.72■□□□□ 0.27
HDAC9-225ENST00000490851 HMGXB3Q12766 1538 aa16.69■□□□□ 0.26
HDAC9-225ENST00000490851 CC2D2AQ9P2K1 1620 aa16.68■□□□□ 0.26
HDAC9-225ENST00000490851 ABCC8Q09428 1581 aa16.65■□□□□ 0.26
HDAC9-225ENST00000490851 FAM9AQ8IZU1 332 aaPredicted RBP16.6■□□□□ 0.25
HDAC9-225ENST00000490851 TTBK1Q5TCY1 1321 aaPredicted RBP16.57■□□□□ 0.24
HDAC9-225ENST00000490851 LOC105371045A0A1W2PR82 267 aa16.56■□□□□ 0.24
HDAC9-225ENST00000490851 SLC24A1O60721 1099 aa16.5■□□□□ 0.23
HDAC9-225ENST00000490851 EHMT2Q96KQ7 1210 aa16.48■□□□□ 0.23
HDAC9-225ENST00000490851 WRNQ14191 1432 aaPredicted RBP eCLIP16.45■□□□□ 0.22
HDAC9-225ENST00000490851 CFTRP13569 1480 aa16.4■□□□□ 0.22
HDAC9-225ENST00000490851 SYNJ1O43426 1573 aa16.4■□□□□ 0.22
HDAC9-225ENST00000490851 DNAJC5BQ9UF47 199 aa16.38■□□□□ 0.21
HDAC9-225ENST00000490851 CADPSQ9ULU8 1353 aa16.35■□□□□ 0.21
HDAC9-225ENST00000490851 SOGA1O94964 1423 aa16.34■□□□□ 0.21
HDAC9-225ENST00000490851 RUSC2Q8N2Y8 1516 aa16.29■□□□□ 0.2
HDAC9-225ENST00000490851 NESP48681 1621 aa16.28■□□□□ 0.2
HDAC9-225ENST00000490851 PRDM2Q13029 1718 aa16.27■□□□□ 0.2
HDAC9-225ENST00000490851 TOP2BQ02880 1626 aa16.26■□□□□ 0.19
HDAC9-225ENST00000490851 CUX1P39880 1505 aa16.24■□□□□ 0.19
HDAC9-225ENST00000490851 BIVM-ERCC5R4GMW8 1640 aa16.22■□□□□ 0.19
HDAC9-225ENST00000490851 FANCD2Q9BXW9 1451 aa16.2■□□□□ 0.18
HDAC9-225ENST00000490851 CSRNP3Q8WYN3 585 aa16.18■□□□□ 0.18
HDAC9-225ENST00000490851 EEA1Q15075 1411 aa16.16■□□□□ 0.18
HDAC9-225ENST00000490851 LAMC3Q9Y6N6 1575 aa16.14■□□□□ 0.17
HDAC9-225ENST00000490851 CEP164Q9UPV0 1460 aa16.08■□□□□ 0.17
HDAC9-225ENST00000490851 UBTFP17480 764 aaKnown RBP16.08■□□□□ 0.17
HDAC9-225ENST00000490851 FGD5Q6ZNL6 1462 aa16.07■□□□□ 0.16
HDAC9-225ENST00000490851 PDS5BQ9NTI5 1447 aa16.05■□□□□ 0.16
HDAC9-225ENST00000490851 GOLGA3Q08378 1498 aa16.03■□□□□ 0.16
HDAC9-225ENST00000490851 KIF21AQ7Z4S6 1674 aa16.03■□□□□ 0.16
HDAC9-225ENST00000490851 DNMBPQ6XZF7 1577 aa16.02■□□□□ 0.16
HDAC9-225ENST00000490851 TOPBP1Q92547 1522 aa16.02■□□□□ 0.16
HDAC9-225ENST00000490851 KIF27Q86VH2 1401 aa16.01■□□□□ 0.15
HDAC9-225ENST00000490851 CUX2O14529 1486 aa16■□□□□ 0.15
HDAC9-225ENST00000490851 URB2Q14146 1524 aaKnown RBP16■□□□□ 0.15
HDAC9-225ENST00000490851 KIF21BO75037 1637 aa15.98■□□□□ 0.15
HDAC9-225ENST00000490851 RAPGEF2Q9Y4G8 1499 aa15.98■□□□□ 0.15
HDAC9-225ENST00000490851 RAD54L2Q9Y4B4 1467 aa15.98■□□□□ 0.15
HDAC9-225ENST00000490851 TNIKQ9UKE5 1360 aa15.97■□□□□ 0.15
HDAC9-225ENST00000490851 CEP162Q5TB80 1403 aa15.97■□□□□ 0.15
HDAC9-225ENST00000490851 POLA1P09884 1462 aaPredicted RBP15.96■□□□□ 0.15
HDAC9-225ENST00000490851 RANGAP1P46060 587 aaPredicted RBP15.95■□□□□ 0.14
HDAC9-225ENST00000490851 PRKCSHP14314 528 aaPredicted RBP15.92■□□□□ 0.14
HDAC9-225ENST00000490851 PCGF6Q9BYE7 350 aa15.89■□□□□ 0.13
HDAC9-225ENST00000490851 PRXQ9BXM0 1461 aa15.89■□□□□ 0.13
HDAC9-225ENST00000490851 PPARGC1BQ86YN6 1023 aaKnown RBP15.88■□□□□ 0.13
HDAC9-225ENST00000490851 IGF1RP08069 1367 aa15.87■□□□□ 0.13
HDAC9-225ENST00000490851 ERCC6Q03468 1493 aa15.86■□□□□ 0.13
HDAC9-225ENST00000490851 ABCA10Q8WWZ4 1543 aa15.86■□□□□ 0.13
HDAC9-225ENST00000490851 MRC2Q9UBG0 1479 aa15.85■□□□□ 0.13
HDAC9-225ENST00000490851 APLP2Q06481 763 aa15.85■□□□□ 0.13
HDAC9-225ENST00000490851 ERICH3Q5RHP9 1530 aa15.84■□□□□ 0.13
HDAC9-225ENST00000490851 TDRD9Q8NDG6 1382 aaKnown RBP15.83■□□□□ 0.12
HDAC9-225ENST00000490851 ERICH6Q7L0X2 663 aa15.83■□□□□ 0.12
HDAC9-225ENST00000490851 CLIP1P30622 1438 aa15.82■□□□□ 0.12
HDAC9-225ENST00000490851 CARMIL1Q5VZK9 1371 aa15.81■□□□□ 0.12
HDAC9-225ENST00000490851 WDR97A6NE52 1622 aa15.78■□□□□ 0.12
HDAC9-225ENST00000490851 TRIM26Q12899 539 aaPredicted RBP15.75■□□□□ 0.11
HDAC9-225ENST00000490851 TARBP1Q13395 1621 aaKnown RBP15.75■□□□□ 0.11
HDAC9-225ENST00000490851 GAPVD1Q14C86 1478 aa15.74■□□□□ 0.11
HDAC9-225ENST00000490851 WDR62O43379 1518 aa15.73■□□□□ 0.11
HDAC9-225ENST00000490851 ABCA5Q8WWZ7 1642 aa15.73■□□□□ 0.11
HDAC9-225ENST00000490851 AQRO60306 1485 aaKnown RBP eCLIP15.7■□□□□ 0.1
HDAC9-225ENST00000490851 THOC2Q8NI27 1593 aaKnown RBP15.68■□□□□ 0.1
HDAC9-225ENST00000490851 CUL7Q14999 1698 aa15.68■□□□□ 0.1
HDAC9-225ENST00000490851 ZNF608Q9ULD9 1512 aaPredicted RBP15.66■□□□□ 0.1
HDAC9-225ENST00000490851 IFT140Q96RY7 1462 aa15.65■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 80 ms