RNA–Protein interactions for RNA: ENST00000490501.5

PRKRA-212, Transcript of protein activator of interferon induced protein kinase EIF2AK2, human

TSL 2

Gene PRKRA, Length 1,851 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKRA-212	ENST00000490501	AEBP2	Q6ZN18	517 aa	Predicted RBP	18.41	■□□□□ 0.54
PRKRA-212	ENST00000490501	CHIC1	Q5VXU3	224 aa		17.31	■□□□□ 0.36
PRKRA-212	ENST00000490501	SENP3	Q9H4L4	574 aa	Predicted RBP	15.98	■□□□□ 0.15
PRKRA-212	ENST00000490501	POTED	Q86YR6	584 aa		15.69	■□□□□ 0.1
PRKRA-212	ENST00000490501	PHF23	Q9BUL5	403 aa	Predicted RBP	15.57	■□□□□ 0.08
PRKRA-212	ENST00000490501	NISCH	Q9Y2I1	1504 aa		15.28	■□□□□ 0.04
PRKRA-212	ENST00000490501	FOXD1	Q16676	465 aa		14.93	□□□□□ -0.02
PRKRA-212	ENST00000490501	MSH5	O43196	834 aa		14.45	□□□□□ -0.1
PRKRA-212	ENST00000490501	PIAS4	Q8N2W9	510 aa	Predicted RBP	13.74	□□□□□ -0.21
PRKRA-212	ENST00000490501	CCDC180	Q9P1Z9	1646 aa		13.42	□□□□□ -0.26
PRKRA-212	ENST00000490501	PPP6R1	Q9UPN7	881 aa		13.16	□□□□□ -0.3
PRKRA-212	ENST00000490501	ABCC9	O60706	1549 aa		13.09	□□□□□ -0.31
PRKRA-212	ENST00000490501	ADRA2B	P18089	450 aa		13.08	□□□□□ -0.32
PRKRA-212	ENST00000490501	CACNB1	Q02641	598 aa	Predicted RBP	12.97	□□□□□ -0.33
PRKRA-212	ENST00000490501	PLPPR3	Q6T4P5	718 aa		12.85	□□□□□ -0.35
PRKRA-212	ENST00000490501	ZCCHC6	Q5VYS8	1495 aa	Known RBP	12.77	□□□□□ -0.36
PRKRA-212	ENST00000490501	DCAF8L2	P0C7V8	631 aa		12.77	□□□□□ -0.37
PRKRA-212	ENST00000490501	NACAD	O15069	1562 aa		12.57	□□□□□ -0.4
PRKRA-212	ENST00000490501	DCAF1	Q9Y4B6	1507 aa		12.56	□□□□□ -0.4
PRKRA-212	ENST00000490501	RB1CC1	Q8TDY2	1594 aa		12.56	□□□□□ -0.4
PRKRA-212	ENST00000490501	MYO15B	Q96JP2	1530 aa		12.51	□□□□□ -0.41
PRKRA-212	ENST00000490501	DMRT2	Q9Y5R5	561 aa		12.49	□□□□□ -0.41
PRKRA-212	ENST00000490501	SCRIB	Q14160	1630 aa		12.4	□□□□□ -0.42
PRKRA-212	ENST00000490501	UNC13A	Q9UPW8	1703 aa		12.37	□□□□□ -0.43
PRKRA-212	ENST00000490501	SHROOM4	Q9ULL8	1493 aa		12.35	□□□□□ -0.43
PRKRA-212	ENST00000490501	PABPN1	Q86U42	306 aa	Known RBP eCLIP	12.3	□□□□□ -0.44
PRKRA-212	ENST00000490501	MAPK8IP2	Q13387	824 aa	Predicted RBP	12.29	□□□□□ -0.44
PRKRA-212	ENST00000490501	BICRA	Q9NZM4	1560 aa		12.26	□□□□□ -0.45
PRKRA-212	ENST00000490501	RNF39	Q9H2S5	420 aa		12.18	□□□□□ -0.46
PRKRA-212	ENST00000490501	POTEH	Q6S545	545 aa		12.12	□□□□□ -0.47
PRKRA-212	ENST00000490501	SCAF1	Q9H7N4	1312 aa	Known RBP	12.11	□□□□□ -0.47
PRKRA-212	ENST00000490501	DCAF8L1	A6NGE4	600 aa		12.01	□□□□□ -0.49
PRKRA-212	ENST00000490501	C1QBP	Q07021	282 aa	Known RBP	12	□□□□□ -0.49
PRKRA-212	ENST00000490501	CECR2	Q9BXF3	1484 aa		11.96	□□□□□ -0.49
PRKRA-212	ENST00000490501	DNAJC5B	Q9UF47	199 aa		11.89	□□□□□ -0.51
PRKRA-212	ENST00000490501	EIF4G1	Q04637	1599 aa	Known RBP	11.88	□□□□□ -0.51
PRKRA-212	ENST00000490501	MROH2B	Q7Z745	1585 aa		11.84	□□□□□ -0.51
PRKRA-212	ENST00000490501	SMARCA4	P51532	1647 aa		11.82	□□□□□ -0.52
PRKRA-212	ENST00000490501	CC2D2A	Q9P2K1	1620 aa		11.81	□□□□□ -0.52
PRKRA-212	ENST00000490501	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	11.79	□□□□□ -0.52
PRKRA-212	ENST00000490501	RSF1	Q96T23	1441 aa	Predicted RBP	11.75	□□□□□ -0.53
PRKRA-212	ENST00000490501	WIZ	O95785	1651 aa		11.73	□□□□□ -0.53
PRKRA-212	ENST00000490501	ATAD2B	Q9ULI0	1458 aa		11.7	□□□□□ -0.54
PRKRA-212	ENST00000490501	SUPT5H	O00267	1087 aa	Known RBP	11.68	□□□□□ -0.54
PRKRA-212	ENST00000490501	SMARCA2	P51531	1590 aa		11.64	□□□□□ -0.55
PRKRA-212	ENST00000490501	PEG3	Q9GZU2	1588 aa		11.64	□□□□□ -0.55
PRKRA-212	ENST00000490501	HOXD11	P31277	338 aa	Predicted RBP	11.64	□□□□□ -0.55
PRKRA-212	ENST00000490501	NCAPD3	P42695	1498 aa		11.62	□□□□□ -0.55
PRKRA-212	ENST00000490501	BAZ1B	Q9UIG0	1483 aa	Known RBP	11.61	□□□□□ -0.55
PRKRA-212	ENST00000490501	HMGXB3	Q12766	1538 aa		11.58	□□□□□ -0.56
PRKRA-212	ENST00000490501	TOP2A	P11388	1531 aa	Known RBP	11.55	□□□□□ -0.56
PRKRA-212	ENST00000490501	CCDC88B	A6NC98	1476 aa		11.45	□□□□□ -0.58
PRKRA-212	ENST00000490501	NES	P48681	1621 aa		11.41	□□□□□ -0.58
PRKRA-212	ENST00000490501	CADPS	Q9ULU8	1353 aa		11.31	□□□□□ -0.6
PRKRA-212	ENST00000490501	RNF216	Q9NWF9	866 aa	Predicted RBP	11.3	□□□□□ -0.6
PRKRA-212	ENST00000490501	CFTR	P13569	1480 aa		11.29	□□□□□ -0.6
PRKRA-212	ENST00000490501	LAMC3	Q9Y6N6	1575 aa		11.27	□□□□□ -0.6
PRKRA-212	ENST00000490501	KIF21A	Q7Z4S6	1674 aa		11.24	□□□□□ -0.61
PRKRA-212	ENST00000490501	FANCD2	Q9BXW9	1451 aa		11.22	□□□□□ -0.61
PRKRA-212	ENST00000490501	ERCC6	Q03468	1493 aa		11.21	□□□□□ -0.62
PRKRA-212	ENST00000490501	PRDM2	Q13029	1718 aa		11.2	□□□□□ -0.62
PRKRA-212	ENST00000490501	PDS5B	Q9NTI5	1447 aa		11.19	□□□□□ -0.62
PRKRA-212	ENST00000490501	CEP164	Q9UPV0	1460 aa		11.16	□□□□□ -0.62
PRKRA-212	ENST00000490501	CNKSR2	Q8WXI2	1034 aa		11.16	□□□□□ -0.62
PRKRA-212	ENST00000490501	ABCC8	Q09428	1581 aa		11.15	□□□□□ -0.62
PRKRA-212	ENST00000490501	URB2	Q14146	1524 aa	Known RBP	11.13	□□□□□ -0.63
PRKRA-212	ENST00000490501	THOC2	Q8NI27	1593 aa	Known RBP	11.13	□□□□□ -0.63
PRKRA-212	ENST00000490501	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	11.11	□□□□□ -0.63	9e-8	■□□□□ 8.2
PRKRA-212	ENST00000490501	PPP4R3CP	Q6ZMV5	832 aa		11.1	□□□□□ -0.63
PRKRA-212	ENST00000490501	MRC2	Q9UBG0	1479 aa		11.1	□□□□□ -0.63
PRKRA-212	ENST00000490501	CUX1	P39880	1505 aa		11.09	□□□□□ -0.63
PRKRA-212	ENST00000490501	SYNJ1	O43426	1573 aa		11.06	□□□□□ -0.64
PRKRA-212	ENST00000490501	DSG3	P32926	999 aa		11.06	□□□□□ -0.64
PRKRA-212	ENST00000490501	TOPBP1	Q92547	1522 aa		11.06	□□□□□ -0.64
PRKRA-212	ENST00000490501	WDR62	O43379	1518 aa		11.05	□□□□□ -0.64
PRKRA-212	ENST00000490501	WRN	Q14191	1432 aa	Predicted RBP eCLIP	11.05	□□□□□ -0.64
PRKRA-212	ENST00000490501	DNMBP	Q6XZF7	1577 aa		11.04	□□□□□ -0.64
PRKRA-212	ENST00000490501	FGD5	Q6ZNL6	1462 aa		11	□□□□□ -0.65
PRKRA-212	ENST00000490501	CUX2	O14529	1486 aa		10.99	□□□□□ -0.65
PRKRA-212	ENST00000490501	RAD54L2	Q9Y4B4	1467 aa		10.99	□□□□□ -0.65
PRKRA-212	ENST00000490501	TOP2B	Q02880	1626 aa		10.99	□□□□□ -0.65
PRKRA-212	ENST00000490501	POLA1	P09884	1462 aa	Predicted RBP	10.99	□□□□□ -0.65
PRKRA-212	ENST00000490501	BIVM-ERCC5	R4GMW8	1640 aa		10.99	□□□□□ -0.65
PRKRA-212	ENST00000490501	ZNF608	Q9ULD9	1512 aa	Predicted RBP	10.94	□□□□□ -0.66
PRKRA-212	ENST00000490501	TRIM41	Q8WV44	630 aa		10.93	□□□□□ -0.66
PRKRA-212	ENST00000490501	SOGA1	O94964	1423 aa		10.93	□□□□□ -0.66
PRKRA-212	ENST00000490501	TARBP1	Q13395	1621 aa	Known RBP	10.93	□□□□□ -0.66
PRKRA-212	ENST00000490501	CAPN15	O75808	1086 aa		10.91	□□□□□ -0.66
PRKRA-212	ENST00000490501	SP7	Q8TDD2	431 aa	Predicted RBP	10.91	□□□□□ -0.66
PRKRA-212	ENST00000490501	IFT140	Q96RY7	1462 aa		10.9	□□□□□ -0.66
PRKRA-212	ENST00000490501	TDRD9	Q8NDG6	1382 aa	Known RBP	10.9	□□□□□ -0.67
PRKRA-212	ENST00000490501	AQR	O60306	1485 aa	Known RBP eCLIP	10.89	□□□□□ -0.67
PRKRA-212	ENST00000490501	WDR97	A6NE52	1622 aa		10.88	□□□□□ -0.67
PRKRA-212	ENST00000490501	RUSC2	Q8N2Y8	1516 aa		10.87	□□□□□ -0.67
PRKRA-212	ENST00000490501	ABCA10	Q8WWZ4	1543 aa		10.86	□□□□□ -0.67
PRKRA-212	ENST00000490501	EIF4G3	O43432	1585 aa	Known RBP	10.86	□□□□□ -0.67
PRKRA-212	ENST00000490501	SPINK5	Q9NQ38	1064 aa	Predicted RBP	10.83	□□□□□ -0.68
PRKRA-212	ENST00000490501	FAM9A	Q8IZU1	332 aa	Predicted RBP	10.82	□□□□□ -0.68
PRKRA-212	ENST00000490501	ABCA5	Q8WWZ7	1642 aa		10.81	□□□□□ -0.68
PRKRA-212	ENST00000490501	GAPVD1	Q14C86	1478 aa		10.8	□□□□□ -0.68

Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms