RNA–Protein interactions for RNA: ENST00000487062.1

SF3A3-206, Transcript of splicing factor 3a subunit 3, humanhuman

TSL 2

Gene SF3A3, Length 775 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A3-206ENST00000487062 NISCHQ9Y2I1 1504 aa15.91■□□□□ 0.14
SF3A3-206ENST00000487062 CHIC1Q5VXU3 224 aa15.31■□□□□ 0.04
SF3A3-206ENST00000487062 AEBP2Q6ZN18 517 aaPredicted RBP14.96□□□□□ -0.01
SF3A3-206ENST00000487062 CCDC180Q9P1Z9 1646 aa13.95□□□□□ -0.18
SF3A3-206ENST00000487062 PHF23Q9BUL5 403 aaPredicted RBP13.58□□□□□ -0.24
SF3A3-206ENST00000487062 ZCCHC6Q5VYS8 1495 aaKnown RBP13.36□□□□□ -0.27
SF3A3-206ENST00000487062 DCAF1Q9Y4B6 1507 aa13.19□□□□□ -0.3
SF3A3-206ENST00000487062 DCAF8L2P0C7V8 631 aa13.11□□□□□ -0.31
SF3A3-206ENST00000487062 ABCC9O60706 1549 aa13.09□□□□□ -0.31
SF3A3-206ENST00000487062 MYO15BQ96JP2 1530 aa13.04□□□□□ -0.32
SF3A3-206ENST00000487062 NACADO15069 1562 aa12.96□□□□□ -0.33
SF3A3-206ENST00000487062 SHROOM4Q9ULL8 1493 aa12.92□□□□□ -0.34
SF3A3-206ENST00000487062 RB1CC1Q8TDY2 1594 aa12.86□□□□□ -0.35
SF3A3-206ENST00000487062 SCRIBQ14160 1630 aa12.76□□□□□ -0.37
SF3A3-206ENST00000487062 PLPPR3Q6T4P5 718 aa12.71□□□□□ -0.37
SF3A3-206ENST00000487062 UNC13AQ9UPW8 1703 aa12.6□□□□□ -0.39
SF3A3-206ENST00000487062 SENP3Q9H4L4 574 aaPredicted RBP12.49□□□□□ -0.41
SF3A3-206ENST00000487062 SUPT5HO00267 1087 aaKnown RBP12.45□□□□□ -0.42
SF3A3-206ENST00000487062 BICRAQ9NZM4 1560 aa12.41□□□□□ -0.42
SF3A3-206ENST00000487062 POTEDQ86YR6 584 aa12.39□□□□□ -0.43
SF3A3-206ENST00000487062 BAZ1AQ9NRL2 1556 aaPredicted RBP12.31□□□□□ -0.44
SF3A3-206ENST00000487062 RSF1Q96T23 1441 aaPredicted RBP12.31□□□□□ -0.44
SF3A3-206ENST00000487062 PABPN1Q86U42 306 aaKnown RBP eCLIP12.31□□□□□ -0.44
SF3A3-206ENST00000487062 CECR2Q9BXF3 1484 aa12.31□□□□□ -0.44
SF3A3-206ENST00000487062 MROH2BQ7Z745 1585 aa12.26□□□□□ -0.45
SF3A3-206ENST00000487062 SMARCA4P51532 1647 aa12.25□□□□□ -0.45
SF3A3-206ENST00000487062 WIZO95785 1651 aa12.19□□□□□ -0.46
SF3A3-206ENST00000487062 PEG3Q9GZU2 1588 aa12.1□□□□□ -0.47
SF3A3-206ENST00000487062 TOP2AP11388 1531 aaKnown RBP12.08□□□□□ -0.48
SF3A3-206ENST00000487062 SMARCA2P51531 1590 aa12.06□□□□□ -0.48
SF3A3-206ENST00000487062 EIF4G1Q04637 1599 aaKnown RBP12.05□□□□□ -0.48
SF3A3-206ENST00000487062 ATAD2BQ9ULI0 1458 aa12.02□□□□□ -0.49
SF3A3-206ENST00000487062 BAZ1BQ9UIG0 1483 aaKnown RBP11.98□□□□□ -0.49
SF3A3-206ENST00000487062 EHMT2Q96KQ7 1210 aa11.95□□□□□ -0.5
SF3A3-206ENST00000487062 HMGXB3Q12766 1538 aa11.94□□□□□ -0.5
SF3A3-206ENST00000487062 KCNA4P22459 653 aa11.93□□□□□ -0.5
SF3A3-206ENST00000487062 CCDC88BA6NC98 1476 aa11.92□□□□□ -0.5
SF3A3-206ENST00000487062 NCAPD3P42695 1498 aa11.92□□□□□ -0.5
SF3A3-206ENST00000487062 ADRA2BP18089 450 aa11.92□□□□□ -0.5
SF3A3-206ENST00000487062 CC2D2AQ9P2K1 1620 aa11.88□□□□□ -0.51
SF3A3-206ENST00000487062 TRIM41Q8WV44 630 aa11.74□□□□□ -0.53
SF3A3-206ENST00000487062 PPP6R1Q9UPN7 881 aa11.72□□□□□ -0.53
SF3A3-206ENST00000487062 PRDM2Q13029 1718 aa11.7□□□□□ -0.54
SF3A3-206ENST00000487062 ABCC8Q09428 1581 aa11.67□□□□□ -0.54
SF3A3-206ENST00000487062 CFTRP13569 1480 aa11.65□□□□□ -0.54
SF3A3-206ENST00000487062 CADPSQ9ULU8 1353 aa11.62□□□□□ -0.55
SF3A3-206ENST00000487062 WRNQ14191 1432 aaPredicted RBP eCLIP11.61□□□□□ -0.55
SF3A3-206ENST00000487062 LAMC3Q9Y6N6 1575 aa11.57□□□□□ -0.56
SF3A3-206ENST00000487062 SYNJ1O43426 1573 aa11.56□□□□□ -0.56
SF3A3-206ENST00000487062 CSRNP3Q8WYN3 585 aa11.56□□□□□ -0.56
SF3A3-206ENST00000487062 BIVM-ERCC5R4GMW8 1640 aa11.55□□□□□ -0.56
SF3A3-206ENST00000487062 TOP2BQ02880 1626 aa11.54□□□□□ -0.56
SF3A3-206ENST00000487062 FOXD1Q16676 465 aa11.54□□□□□ -0.56
SF3A3-206ENST00000487062 EEA1Q15075 1411 aa11.5□□□□□ -0.57
SF3A3-206ENST00000487062 FANCD2Q9BXW9 1451 aa11.5□□□□□ -0.57
SF3A3-206ENST00000487062 FAM9AQ8IZU1 332 aaPredicted RBP11.48□□□□□ -0.57
SF3A3-206ENST00000487062 CUX1P39880 1505 aa11.48□□□□□ -0.57
SF3A3-206ENST00000487062 NESP48681 1621 aa11.48□□□□□ -0.57
SF3A3-206ENST00000487062 DNAJC5BQ9UF47 199 aa11.47□□□□□ -0.57
SF3A3-206ENST00000487062 PDS5BQ9NTI5 1447 aa11.45□□□□□ -0.58
SF3A3-206ENST00000487062 SLC4A1APQ9BWU0 796 aaKnown RBP11.45□□□□□ -0.58
SF3A3-206ENST00000487062 CEP164Q9UPV0 1460 aa11.44□□□□□ -0.58
SF3A3-206ENST00000487062 LOC105371045A0A1W2PR82 267 aa11.43□□□□□ -0.58
SF3A3-206ENST00000487062 SOGA1O94964 1423 aa11.43□□□□□ -0.58
SF3A3-206ENST00000487062 DNMBPQ6XZF7 1577 aa11.42□□□□□ -0.58
SF3A3-206ENST00000487062 KIF21AQ7Z4S6 1674 aa11.41□□□□□ -0.58
SF3A3-206ENST00000487062 RUSC2Q8N2Y8 1516 aa11.37□□□□□ -0.59
SF3A3-206ENST00000487062 TOPBP1Q92547 1522 aa11.37□□□□□ -0.59
SF3A3-206ENST00000487062 FGD5Q6ZNL6 1462 aa11.37□□□□□ -0.59
SF3A3-206ENST00000487062 KIF27Q86VH2 1401 aa11.35□□□□□ -0.59
SF3A3-206ENST00000487062 KIF21BO75037 1637 aa11.34□□□□□ -0.59
SF3A3-206ENST00000487062 URB2Q14146 1524 aaKnown RBP11.33□□□□□ -0.6
SF3A3-206ENST00000487062 GOLGA3Q08378 1498 aa11.32□□□□□ -0.6
SF3A3-206ENST00000487062 PPP4R3CPQ6ZMV5 832 aa11.31□□□□□ -0.6
SF3A3-206ENST00000487062 POLA1P09884 1462 aaPredicted RBP11.3□□□□□ -0.6
SF3A3-206ENST00000487062 MRC2Q9UBG0 1479 aa11.3□□□□□ -0.6
SF3A3-206ENST00000487062 CUX2O14529 1486 aa11.29□□□□□ -0.6
SF3A3-206ENST00000487062 ABCA10Q8WWZ4 1543 aa11.28□□□□□ -0.6
SF3A3-206ENST00000487062 WDR97A6NE52 1622 aa11.27□□□□□ -0.61
SF3A3-206ENST00000487062 TNIKQ9UKE5 1360 aa11.27□□□□□ -0.61
SF3A3-206ENST00000487062 ERCC6Q03468 1493 aa11.26□□□□□ -0.61
SF3A3-206ENST00000487062 ERICH3Q5RHP9 1530 aa11.26□□□□□ -0.61
SF3A3-206ENST00000487062 UBTFP17480 764 aaKnown RBP11.25□□□□□ -0.61
SF3A3-206ENST00000487062 RAD54L2Q9Y4B4 1467 aa11.25□□□□□ -0.61
SF3A3-206ENST00000487062 WDR62O43379 1518 aa11.24□□□□□ -0.61
SF3A3-206ENST00000487062 PRXQ9BXM0 1461 aa11.23□□□□□ -0.61
SF3A3-206ENST00000487062 RAPGEF2Q9Y4G8 1499 aa11.21□□□□□ -0.61
SF3A3-206ENST00000487062 MSH5O43196 834 aa11.21□□□□□ -0.61
SF3A3-206ENST00000487062 TARBP1Q13395 1621 aaKnown RBP11.2□□□□□ -0.62
SF3A3-206ENST00000487062 THOC2Q8NI27 1593 aaKnown RBP11.2□□□□□ -0.62
SF3A3-206ENST00000487062 CUL7Q14999 1698 aa11.2□□□□□ -0.62
SF3A3-206ENST00000487062 IGF1RP08069 1367 aa11.19□□□□□ -0.62
SF3A3-206ENST00000487062 ABCA5Q8WWZ7 1642 aa11.19□□□□□ -0.62
SF3A3-206ENST00000487062 CEP162Q5TB80 1403 aa11.18□□□□□ -0.62
SF3A3-206ENST00000487062 NCBP3Q53F19 620 aaKnown RBP11.18□□□□□ -0.62
SF3A3-206ENST00000487062 IFT140Q96RY7 1462 aa11.17□□□□□ -0.62
SF3A3-206ENST00000487062 CARMIL1Q5VZK9 1371 aa11.16□□□□□ -0.62
SF3A3-206ENST00000487062 GAPVD1Q14C86 1478 aa11.16□□□□□ -0.62
SF3A3-206ENST00000487062 PBRM1Q86U86 1689 aa11.14□□□□□ -0.63
SF3A3-206ENST00000487062 TDRD9Q8NDG6 1382 aaKnown RBP11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 6.9 ms