RNA–Protein interactions for RNA: ENST00000486533.1

COL12A1-208, Transcript of collagen type XII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL12A1, Length 1,554 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1-208ENST00000486533 AEBP2Q6ZN18 517 aaPredicted RBP23.95■■□□□ 1.43
COL12A1-208ENST00000486533 CHIC1Q5VXU3 224 aa22.84■■□□□ 1.25
COL12A1-208ENST00000486533 NISCHQ9Y2I1 1504 aa21.39■■□□□ 1.02
COL12A1-208ENST00000486533 SENP3Q9H4L4 574 aaPredicted RBP20.42■□□□□ 0.86
COL12A1-208ENST00000486533 PHF23Q9BUL5 403 aaPredicted RBP20.15■□□□□ 0.82
COL12A1-208ENST00000486533 CCDC180Q9P1Z9 1646 aa19.14■□□□□ 0.66
COL12A1-208ENST00000486533 ABCC9O60706 1549 aa19.02■□□□□ 0.64
COL12A1-208ENST00000486533 FOXD1Q16676 465 aa19.02■□□□□ 0.63
COL12A1-208ENST00000486533 PLPPR3Q6T4P5 718 aa18.28■□□□□ 0.52
COL12A1-208ENST00000486533 RB1CC1Q8TDY2 1594 aa18.16■□□□□ 0.5
COL12A1-208ENST00000486533 NACADO15069 1562 aa18.05■□□□□ 0.48
COL12A1-208ENST00000486533 DCAF8L2P0C7V8 631 aa18.05■□□□□ 0.48
COL12A1-208ENST00000486533 PPP6R1Q9UPN7 881 aa17.85■□□□□ 0.45
COL12A1-208ENST00000486533 MYO15BQ96JP2 1530 aa17.83■□□□□ 0.44
COL12A1-208ENST00000486533 ADRA2BP18089 450 aa17.78■□□□□ 0.44
COL12A1-208ENST00000486533 PIAS4Q8N2W9 510 aaPredicted RBP17.77■□□□□ 0.44
COL12A1-208ENST00000486533 MSH5O43196 834 aa17.76■□□□□ 0.43
COL12A1-208ENST00000486533 ZCCHC6Q5VYS8 1495 aaKnown RBP17.76■□□□□ 0.43
COL12A1-208ENST00000486533 UNC13AQ9UPW8 1703 aa17.76■□□□□ 0.43
COL12A1-208ENST00000486533 PABPN1Q86U42 306 aaKnown RBP eCLIP17.73■□□□□ 0.43
COL12A1-208ENST00000486533 DNAJC5BQ9UF47 199 aa17.66■□□□□ 0.42
COL12A1-208ENST00000486533 DCAF1Q9Y4B6 1507 aa17.66■□□□□ 0.42
COL12A1-208ENST00000486533 BICRAQ9NZM4 1560 aa17.6■□□□□ 0.41
COL12A1-208ENST00000486533 SCRIBQ14160 1630 aa17.49■□□□□ 0.39
COL12A1-208ENST00000486533 SHROOM4Q9ULL8 1493 aa17.38■□□□□ 0.37
COL12A1-208ENST00000486533 CC2D2AQ9P2K1 1620 aa17.18■□□□□ 0.34
COL12A1-208ENST00000486533 EIF4G1Q04637 1599 aaKnown RBP17.18■□□□□ 0.34
COL12A1-208ENST00000486533 POTEDQ86YR6 584 aa17.17■□□□□ 0.34
COL12A1-208ENST00000486533 CECR2Q9BXF3 1484 aa17.11■□□□□ 0.33
COL12A1-208ENST00000486533 SMARCA4P51532 1647 aa16.67■□□□□ 0.26
COL12A1-208ENST00000486533 NCAPD3P42695 1498 aa16.65■□□□□ 0.26
COL12A1-208ENST00000486533 ATAD2BQ9ULI0 1458 aa16.63■□□□□ 0.25
COL12A1-208ENST00000486533 SMARCA2P51531 1590 aa16.61■□□□□ 0.25
COL12A1-208ENST00000486533 BAZ1AQ9NRL2 1556 aaPredicted RBP16.61■□□□□ 0.25
COL12A1-208ENST00000486533 HMGXB3Q12766 1538 aa16.56■□□□□ 0.24
COL12A1-208ENST00000486533 BAZ1BQ9UIG0 1483 aaKnown RBP16.51■□□□□ 0.23
COL12A1-208ENST00000486533 MROH2BQ7Z745 1585 aa16.49■□□□□ 0.23
COL12A1-208ENST00000486533 PEG3Q9GZU2 1588 aa16.48■□□□□ 0.23
COL12A1-208ENST00000486533 ERCC6Q03468 1493 aa16.43■□□□□ 0.22
COL12A1-208ENST00000486533 NESP48681 1621 aa16.37■□□□□ 0.21
COL12A1-208ENST00000486533 WIZO95785 1651 aa16.32■□□□□ 0.2
COL12A1-208ENST00000486533 CUX2O14529 1486 aa16.3■□□□□ 0.2
COL12A1-208ENST00000486533 MAPK8IP2Q13387 824 aaPredicted RBP16.3■□□□□ 0.2
COL12A1-208ENST00000486533 LAMC3Q9Y6N6 1575 aa16.28■□□□□ 0.2
COL12A1-208ENST00000486533 SCAF1Q9H7N4 1312 aaKnown RBP16.27■□□□□ 0.19
COL12A1-208ENST00000486533 DMRT2Q9Y5R5 561 aa16.21■□□□□ 0.19
COL12A1-208ENST00000486533 RSF1Q96T23 1441 aaPredicted RBP16.2■□□□□ 0.18
COL12A1-208ENST00000486533 KIF21AQ7Z4S6 1674 aa16.18■□□□□ 0.18
COL12A1-208ENST00000486533 PDS5BQ9NTI5 1447 aa16.18■□□□□ 0.18
COL12A1-208ENST00000486533 THOC2Q8NI27 1593 aaKnown RBP16.17■□□□□ 0.18
COL12A1-208ENST00000486533 CADPSQ9ULU8 1353 aa16.16■□□□□ 0.18
COL12A1-208ENST00000486533 TOP2AP11388 1531 aaKnown RBP16.12■□□□□ 0.17
COL12A1-208ENST00000486533 DNAJC5Q9H3Z4 198 aa16.11■□□□□ 0.17
COL12A1-208ENST00000486533 MRC2Q9UBG0 1479 aa16.03■□□□□ 0.16
COL12A1-208ENST00000486533 PPP4R3CPQ6ZMV5 832 aa16.02■□□□□ 0.16
COL12A1-208ENST00000486533 CFTRP13569 1480 aa16.01■□□□□ 0.15
COL12A1-208ENST00000486533 CEP164Q9UPV0 1460 aa16.01■□□□□ 0.15
COL12A1-208ENST00000486533 FANCD2Q9BXW9 1451 aa16■□□□□ 0.15
COL12A1-208ENST00000486533 WDR62O43379 1518 aa15.98■□□□□ 0.15
COL12A1-208ENST00000486533 CCDC88BA6NC98 1476 aa15.92■□□□□ 0.14
COL12A1-208ENST00000486533 PRDM2Q13029 1718 aa15.9■□□□□ 0.14
COL12A1-208ENST00000486533 URB2Q14146 1524 aaKnown RBP15.84■□□□□ 0.13
COL12A1-208ENST00000486533 CNKSR2Q8WXI2 1034 aa15.71■□□□□ 0.11
COL12A1-208ENST00000486533 TOPBP1Q92547 1522 aa15.71■□□□□ 0.11
COL12A1-208ENST00000486533 ABCC8Q09428 1581 aa15.68■□□□□ 0.1
COL12A1-208ENST00000486533 HOXD11P31277 338 aaPredicted RBP15.67■□□□□ 0.1
COL12A1-208ENST00000486533 DNMBPQ6XZF7 1577 aa15.67■□□□□ 0.1
COL12A1-208ENST00000486533 IFT140Q96RY7 1462 aa15.67■□□□□ 0.1
COL12A1-208ENST00000486533 SUPT5HO00267 1087 aaKnown RBP15.64■□□□□ 0.09
COL12A1-208ENST00000486533 ZNF608Q9ULD9 1512 aaPredicted RBP15.63■□□□□ 0.09
COL12A1-208ENST00000486533 OSCARQ8IYS5 282 aa15.59■□□□□ 0.09
COL12A1-208ENST00000486533 EIF4G3O43432 1585 aaKnown RBP15.58■□□□□ 0.08
COL12A1-208ENST00000486533 RNF216Q9NWF9 866 aaPredicted RBP15.57■□□□□ 0.08
COL12A1-208ENST00000486533 POLA1P09884 1462 aaPredicted RBP15.56■□□□□ 0.08
COL12A1-208ENST00000486533 TARBP1Q13395 1621 aaKnown RBP15.55■□□□□ 0.08
COL12A1-208ENST00000486533 TRIM41Q8WV44 630 aa15.53■□□□□ 0.08
COL12A1-208ENST00000486533 AQRO60306 1485 aaKnown RBP eCLIP15.51■□□□□ 0.07
COL12A1-208ENST00000486533 RAD54L2Q9Y4B4 1467 aa15.5■□□□□ 0.07
COL12A1-208ENST00000486533 SOGA1O94964 1423 aa15.49■□□□□ 0.07
COL12A1-208ENST00000486533 FGD5Q6ZNL6 1462 aa15.49■□□□□ 0.07
COL12A1-208ENST00000486533 CUX1P39880 1505 aa15.49■□□□□ 0.07
COL12A1-208ENST00000486533 DCAF8L1A6NGE4 600 aa15.45■□□□□ 0.06
COL12A1-208ENST00000486533 TDRD9Q8NDG6 1382 aaKnown RBP15.45■□□□□ 0.06
COL12A1-208ENST00000486533 CHD1O14646 1710 aa15.43■□□□□ 0.06
COL12A1-208ENST00000486533 FBLN2P98095 1184 aa15.42■□□□□ 0.06
COL12A1-208ENST00000486533 NCBP3Q53F19 620 aaKnown RBP15.42■□□□□ 0.06
COL12A1-208ENST00000486533 WDR97A6NE52 1622 aa15.4■□□□□ 0.06
COL12A1-208ENST00000486533 RIMBP3CA6NJZ7 1639 aa15.38■□□□□ 0.05
COL12A1-208ENST00000486533 RIMBP3BA6NNM3 1639 aa15.38■□□□□ 0.05
COL12A1-208ENST00000486533 RIMBP3Q9UFD9 1639 aa15.38■□□□□ 0.05
COL12A1-208ENST00000486533 SNAPC4Q5SXM2 1469 aa15.37■□□□□ 0.05
COL12A1-208ENST00000486533 ARHGEF11O15085 1522 aa15.36■□□□□ 0.05
COL12A1-208ENST00000486533 GRIN2BQ13224 1484 aa15.34■□□□□ 0.05
COL12A1-208ENST00000486533 MAGI1Q96QZ7 1491 aaPredicted RBP15.32■□□□□ 0.04
COL12A1-208ENST00000486533 PBRM1Q86U86 1689 aa15.31■□□□□ 0.04
COL12A1-208ENST00000486533 ABCA10Q8WWZ4 1543 aa15.31■□□□□ 0.04
COL12A1-208ENST00000486533 CHMP7Q8WUX9 453 aaPredicted RBP15.31■□□□□ 0.04
COL12A1-208ENST00000486533 GAPVD1Q14C86 1478 aa15.3■□□□□ 0.04
COL12A1-208ENST00000486533 WRNQ14191 1432 aaPredicted RBP eCLIP15.3■□□□□ 0.04
COL12A1-208ENST00000486533 TOP2BQ02880 1626 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 75.6 ms