RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 AEBP2Q6ZN18 517 aaPredicted RBP20.65■□□□□ 0.9
USP40-216ENST00000485943 CHIC1Q5VXU3 224 aa20.54■□□□□ 0.88
USP40-216ENST00000485943 NISCHQ9Y2I1 1504 aa18.93■□□□□ 0.62
USP40-216ENST00000485943 PHF23Q9BUL5 403 aaPredicted RBP18.16■□□□□ 0.5
USP40-216ENST00000485943 SENP3Q9H4L4 574 aaPredicted RBP17.35■□□□□ 0.37
USP40-216ENST00000485943 CCDC180Q9P1Z9 1646 aa16.87■□□□□ 0.29
USP40-216ENST00000485943 PLPPR3Q6T4P5 718 aa16.83■□□□□ 0.28
USP40-216ENST00000485943 ABCC9O60706 1549 aa16.53■□□□□ 0.24
USP40-216ENST00000485943 DCAF8L2P0C7V8 631 aa16.13■□□□□ 0.17
USP40-216ENST00000485943 FOXD1Q16676 465 aa16.1■□□□□ 0.17
USP40-216ENST00000485943 RB1CC1Q8TDY2 1594 aa15.93■□□□□ 0.14
USP40-216ENST00000485943 PPP6R1Q9UPN7 881 aa15.87■□□□□ 0.13
USP40-216ENST00000485943 NACADO15069 1562 aa15.86■□□□□ 0.13
USP40-216ENST00000485943 ADRA2BP18089 450 aa15.84■□□□□ 0.13
USP40-216ENST00000485943 ZCCHC6Q5VYS8 1495 aaKnown RBP15.75■□□□□ 0.11
USP40-216ENST00000485943 MYO15BQ96JP2 1530 aa15.67■□□□□ 0.1
USP40-216ENST00000485943 DCAF1Q9Y4B6 1507 aa15.62■□□□□ 0.09
USP40-216ENST00000485943 UNC13AQ9UPW8 1703 aa15.48■□□□□ 0.07
USP40-216ENST00000485943 SCRIBQ14160 1630 aa15.46■□□□□ 0.07
USP40-216ENST00000485943 PABPN1Q86U42 306 aaKnown RBP eCLIP15.46■□□□□ 0.07
USP40-216ENST00000485943 PIAS4Q8N2W9 510 aaPredicted RBP15.24■□□□□ 0.03
USP40-216ENST00000485943 BICRAQ9NZM4 1560 aa15.24■□□□□ 0.03
USP40-216ENST00000485943 SHROOM4Q9ULL8 1493 aa15.2■□□□□ 0.02
USP40-216ENST00000485943 KCNA4P22459 653 aa15.1■□□□□ 0.01
USP40-216ENST00000485943 EIF4G1Q04637 1599 aaKnown RBP14.96□□□□□ -0.01
USP40-216ENST00000485943 DNAJC5BQ9UF47 199 aa14.95□□□□□ -0.02
USP40-216ENST00000485943 CC2D2AQ9P2K1 1620 aa14.92□□□□□ -0.02
USP40-216ENST00000485943 PPP4R3CPQ6ZMV5 832 aa14.9□□□□□ -0.02
USP40-216ENST00000485943 CECR2Q9BXF3 1484 aa14.84□□□□□ -0.03
USP40-216ENST00000485943 BAZ1AQ9NRL2 1556 aaPredicted RBP14.76□□□□□ -0.05
USP40-216ENST00000485943 SMARCA4P51532 1647 aa14.72□□□□□ -0.05
USP40-216ENST00000485943 SMARCA2P51531 1590 aa14.68□□□□□ -0.06
USP40-216ENST00000485943 MSH5O43196 834 aa14.63□□□□□ -0.07
USP40-216ENST00000485943 BAZ1BQ9UIG0 1483 aaKnown RBP14.6□□□□□ -0.07
USP40-216ENST00000485943 ATAD2BQ9ULI0 1458 aa14.6□□□□□ -0.07
USP40-216ENST00000485943 MROH2BQ7Z745 1585 aa14.57□□□□□ -0.08
USP40-216ENST00000485943 NCBP3Q53F19 620 aaKnown RBP14.57□□□□□ -0.08
USP40-216ENST00000485943 NCAPD3P42695 1498 aa14.56□□□□□ -0.08
USP40-216ENST00000485943 HMGXB3Q12766 1538 aa14.54□□□□□ -0.08
USP40-216ENST00000485943 EHMT2Q96KQ7 1210 aa14.5□□□□□ -0.09
USP40-216ENST00000485943 WIZO95785 1651 aa14.48□□□□□ -0.09
USP40-216ENST00000485943 PEG3Q9GZU2 1588 aa14.47□□□□□ -0.09
USP40-216ENST00000485943 NPM3O75607 178 aaKnown RBP14.46□□□□□ -0.09
USP40-216ENST00000485943 RSF1Q96T23 1441 aaPredicted RBP14.41□□□□□ -0.1
USP40-216ENST00000485943 SLC4A1APQ9BWU0 796 aaKnown RBP14.4□□□□□ -0.1
USP40-216ENST00000485943 SCAF1Q9H7N4 1312 aaKnown RBP14.39□□□□□ -0.11
USP40-216ENST00000485943 ERCC6Q03468 1493 aa14.38□□□□□ -0.11
USP40-216ENST00000485943 CNKSR2Q8WXI2 1034 aa14.37□□□□□ -0.11
USP40-216ENST00000485943 TOP2AP11388 1531 aaKnown RBP14.33□□□□□ -0.12
USP40-216ENST00000485943 SUPT5HO00267 1087 aaKnown RBP14.33□□□□□ -0.12
USP40-216ENST00000485943 LAMC3Q9Y6N6 1575 aa14.27□□□□□ -0.12
USP40-216ENST00000485943 MAPK8IP2Q13387 824 aaPredicted RBP14.26□□□□□ -0.13
USP40-216ENST00000485943 NESP48681 1621 aa14.23□□□□□ -0.13
USP40-216ENST00000485943 PDS5BQ9NTI5 1447 aa14.23□□□□□ -0.13
USP40-216ENST00000485943 CADPSQ9ULU8 1353 aa14.21□□□□□ -0.14
USP40-216ENST00000485943 CSRNP3Q8WYN3 585 aa14.2□□□□□ -0.14
USP40-216ENST00000485943 CCDC88BA6NC98 1476 aa14.13□□□□□ -0.15
USP40-216ENST00000485943 KIF21AQ7Z4S6 1674 aa14.13□□□□□ -0.15
USP40-216ENST00000485943 CEP164Q9UPV0 1460 aa14.1□□□□□ -0.15
USP40-216ENST00000485943 PRDM2Q13029 1718 aa14.09□□□□□ -0.15
USP40-216ENST00000485943 FANCD2Q9BXW9 1451 aa14.08□□□□□ -0.16
USP40-216ENST00000485943 CUX2O14529 1486 aa14.07□□□□□ -0.16
USP40-216ENST00000485943 CFTRP13569 1480 aa14.07□□□□□ -0.16
USP40-216ENST00000485943 MRC2Q9UBG0 1479 aa14.03□□□□□ -0.16
USP40-216ENST00000485943 RNF216Q9NWF9 866 aaPredicted RBP14□□□□□ -0.17
USP40-216ENST00000485943 THOC2Q8NI27 1593 aaKnown RBP14□□□□□ -0.17
USP40-216ENST00000485943 ZBTB22O15209 634 aa13.96□□□□□ -0.17
USP40-216ENST00000485943 DMRT2Q9Y5R5 561 aa13.96□□□□□ -0.17
USP40-216ENST00000485943 WDR62O43379 1518 aa13.91□□□□□ -0.18
USP40-216ENST00000485943 ABCC8Q09428 1581 aa13.91□□□□□ -0.18
USP40-216ENST00000485943 HOXD11P31277 338 aaPredicted RBP13.86□□□□□ -0.19
USP40-216ENST00000485943 URB2Q14146 1524 aaKnown RBP13.85□□□□□ -0.19
USP40-216ENST00000485943 DNMBPQ6XZF7 1577 aa13.83□□□□□ -0.2
USP40-216ENST00000485943 TOPBP1Q92547 1522 aa13.82□□□□□ -0.2
USP40-216ENST00000485943 IFT140Q96RY7 1462 aa13.77□□□□□ -0.21
USP40-216ENST00000485943 FOXD4L1Q9NU39 408 aa13.73□□□□□ -0.21
USP40-216ENST00000485943 SOGA1O94964 1423 aa13.71□□□□□ -0.22
USP40-216ENST00000485943 FGD5Q6ZNL6 1462 aa13.7□□□□□ -0.22
USP40-216ENST00000485943 WRNQ14191 1432 aaPredicted RBP eCLIP13.7□□□□□ -0.22
USP40-216ENST00000485943 POLA1P09884 1462 aaPredicted RBP13.69□□□□□ -0.22
USP40-216ENST00000485943 CUX1P39880 1505 aa13.68□□□□□ -0.22
USP40-216ENST00000485943 FBLN2P98095 1184 aa13.66□□□□□ -0.22
USP40-216ENST00000485943 RAD54L2Q9Y4B4 1467 aa13.64□□□□□ -0.23
USP40-216ENST00000485943 EIF4G3O43432 1585 aaKnown RBP13.63□□□□□ -0.23
USP40-216ENST00000485943 ZNF608Q9ULD9 1512 aaPredicted RBP13.62□□□□□ -0.23
USP40-216ENST00000485943 TOP2BQ02880 1626 aa13.61□□□□□ -0.23
USP40-216ENST00000485943 AQRO60306 1485 aaKnown RBP eCLIP13.61□□□□□ -0.23
USP40-216ENST00000485943 TARBP1Q13395 1621 aaKnown RBP13.61□□□□□ -0.23
USP40-216ENST00000485943 BIVM-ERCC5R4GMW8 1640 aa13.61□□□□□ -0.23
USP40-216ENST00000485943 TDRD9Q8NDG6 1382 aaKnown RBP13.6□□□□□ -0.23
USP40-216ENST00000485943 WDR97A6NE52 1622 aa13.59□□□□□ -0.23
USP40-216ENST00000485943 SYNJ1O43426 1573 aa13.58□□□□□ -0.23
USP40-216ENST00000485943 SLC4A2P04920 1241 aa13.58□□□□□ -0.24
USP40-216ENST00000485943 OSCARQ8IYS5 282 aa13.57□□□□□ -0.24
USP40-216ENST00000485943 CHMP7Q8WUX9 453 aaPredicted RBP13.56□□□□□ -0.24
USP40-216ENST00000485943 DNAJC5Q9H3Z4 198 aa13.56□□□□□ -0.24
USP40-216ENST00000485943 GAPVD1Q14C86 1478 aa13.55□□□□□ -0.24
USP40-216ENST00000485943 GRIN2BQ13224 1484 aa13.54□□□□□ -0.24
USP40-216ENST00000485943 PBRM1Q86U86 1689 aa13.53□□□□□ -0.24
USP40-216ENST00000485943 TRIM41Q8WV44 630 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms