RNA–Protein interactions for RNA: ENST00000483955.1

SHROOM4-204, Transcript of shroom family member 4, humanhuman

TSL 2

Gene SHROOM4, Length 882 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4-204ENST00000483955 AEBP2Q6ZN18 517 aaPredicted RBP21.69■■□□□ 1.06
SHROOM4-204ENST00000483955 NISCHQ9Y2I1 1504 aa21.19■□□□□ 0.98
SHROOM4-204ENST00000483955 CHIC1Q5VXU3 224 aa20.21■□□□□ 0.83
SHROOM4-204ENST00000483955 CCDC180Q9P1Z9 1646 aa18.72■□□□□ 0.59
SHROOM4-204ENST00000483955 SENP3Q9H4L4 574 aaPredicted RBP18.55■□□□□ 0.56
SHROOM4-204ENST00000483955 PHF23Q9BUL5 403 aaPredicted RBP18.25■□□□□ 0.51
SHROOM4-204ENST00000483955 ABCC9O60706 1549 aa17.87■□□□□ 0.45
SHROOM4-204ENST00000483955 ZCCHC6Q5VYS8 1495 aaKnown RBP17.75■□□□□ 0.43
SHROOM4-204ENST00000483955 DCAF1Q9Y4B6 1507 aa17.6■□□□□ 0.41
SHROOM4-204ENST00000483955 MYO15BQ96JP2 1530 aa17.54■□□□□ 0.4
SHROOM4-204ENST00000483955 NACADO15069 1562 aa17.5■□□□□ 0.39
SHROOM4-204ENST00000483955 DCAF8L2P0C7V8 631 aa17.47■□□□□ 0.39
SHROOM4-204ENST00000483955 RB1CC1Q8TDY2 1594 aa17.42■□□□□ 0.38
SHROOM4-204ENST00000483955 FOXD1Q16676 465 aa17.39■□□□□ 0.37
SHROOM4-204ENST00000483955 POTEDQ86YR6 584 aa17.13■□□□□ 0.33
SHROOM4-204ENST00000483955 SCRIBQ14160 1630 aa17.06■□□□□ 0.32
SHROOM4-204ENST00000483955 UNC13AQ9UPW8 1703 aa16.98■□□□□ 0.31
SHROOM4-204ENST00000483955 SHROOM4Q9ULL8 1493 aa16.91■□□□□ 0.3
SHROOM4-204ENST00000483955 BICRAQ9NZM4 1560 aa16.82■□□□□ 0.28
SHROOM4-204ENST00000483955 PABPN1Q86U42 306 aaKnown RBP eCLIP16.71■□□□□ 0.27
SHROOM4-204ENST00000483955 MSH5O43196 834 aa16.48■□□□□ 0.23
SHROOM4-204ENST00000483955 BAZ1AQ9NRL2 1556 aaPredicted RBP16.43■□□□□ 0.22
SHROOM4-204ENST00000483955 CECR2Q9BXF3 1484 aa16.41■□□□□ 0.22
SHROOM4-204ENST00000483955 EIF4G1Q04637 1599 aaKnown RBP16.38■□□□□ 0.21
SHROOM4-204ENST00000483955 SMARCA4P51532 1647 aa16.37■□□□□ 0.21
SHROOM4-204ENST00000483955 MROH2BQ7Z745 1585 aa16.3■□□□□ 0.2
SHROOM4-204ENST00000483955 RSF1Q96T23 1441 aaPredicted RBP16.27■□□□□ 0.19
SHROOM4-204ENST00000483955 PEG3Q9GZU2 1588 aa16.22■□□□□ 0.19
SHROOM4-204ENST00000483955 SMARCA2P51531 1590 aa16.21■□□□□ 0.18
SHROOM4-204ENST00000483955 CC2D2AQ9P2K1 1620 aa16.2■□□□□ 0.18
SHROOM4-204ENST00000483955 ATAD2BQ9ULI0 1458 aa16.17■□□□□ 0.18
SHROOM4-204ENST00000483955 WIZO95785 1651 aa16.15■□□□□ 0.18
SHROOM4-204ENST00000483955 NCAPD3P42695 1498 aa16.11■□□□□ 0.17
SHROOM4-204ENST00000483955 HMGXB3Q12766 1538 aa16.11■□□□□ 0.17
SHROOM4-204ENST00000483955 SUPT5HO00267 1087 aaKnown RBP16.09■□□□□ 0.17
SHROOM4-204ENST00000483955 BAZ1BQ9UIG0 1483 aaKnown RBP16.09■□□□□ 0.17
SHROOM4-204ENST00000483955 PIAS4Q8N2W9 510 aaPredicted RBP16.06■□□□□ 0.16
SHROOM4-204ENST00000483955 TOP2AP11388 1531 aaKnown RBP16.05■□□□□ 0.16
SHROOM4-204ENST00000483955 DNAJC5BQ9UF47 199 aa15.95■□□□□ 0.14
SHROOM4-204ENST00000483955 PPP6R1Q9UPN7 881 aa15.82■□□□□ 0.12
SHROOM4-204ENST00000483955 CCDC88BA6NC98 1476 aa15.81■□□□□ 0.12
SHROOM4-204ENST00000483955 ADRA2BP18089 450 aa15.69■□□□□ 0.1
SHROOM4-204ENST00000483955 PLPPR3Q6T4P5 718 aa15.69■□□□□ 0.1
SHROOM4-204ENST00000483955 LAMC3Q9Y6N6 1575 aa15.66■□□□□ 0.1
SHROOM4-204ENST00000483955 CFTRP13569 1480 aa15.65■□□□□ 0.1
SHROOM4-204ENST00000483955 CADPSQ9ULU8 1353 aa15.65■□□□□ 0.1
SHROOM4-204ENST00000483955 PRDM2Q13029 1718 aa15.6■□□□□ 0.09
SHROOM4-204ENST00000483955 NESP48681 1621 aa15.55■□□□□ 0.08
SHROOM4-204ENST00000483955 PDS5BQ9NTI5 1447 aa15.53■□□□□ 0.08
SHROOM4-204ENST00000483955 FANCD2Q9BXW9 1451 aa15.48■□□□□ 0.07
SHROOM4-204ENST00000483955 CEP164Q9UPV0 1460 aa15.46■□□□□ 0.06
SHROOM4-204ENST00000483955 KIF21AQ7Z4S6 1674 aa15.42■□□□□ 0.06
SHROOM4-204ENST00000483955 ERCC6Q03468 1493 aa15.41■□□□□ 0.06
SHROOM4-204ENST00000483955 WRNQ14191 1432 aaPredicted RBP eCLIP15.35■□□□□ 0.05
SHROOM4-204ENST00000483955 ABCC8Q09428 1581 aa15.35■□□□□ 0.05
SHROOM4-204ENST00000483955 MRC2Q9UBG0 1479 aa15.34■□□□□ 0.05
SHROOM4-204ENST00000483955 DNMBPQ6XZF7 1577 aa15.32■□□□□ 0.04
SHROOM4-204ENST00000483955 THOC2Q8NI27 1593 aaKnown RBP15.3■□□□□ 0.04
SHROOM4-204ENST00000483955 BIVM-ERCC5R4GMW8 1640 aa15.29■□□□□ 0.04
SHROOM4-204ENST00000483955 CUX1P39880 1505 aa15.29■□□□□ 0.04
SHROOM4-204ENST00000483955 TOP2BQ02880 1626 aa15.28■□□□□ 0.04
SHROOM4-204ENST00000483955 WDR62O43379 1518 aa15.28■□□□□ 0.04
SHROOM4-204ENST00000483955 SYNJ1O43426 1573 aa15.28■□□□□ 0.04
SHROOM4-204ENST00000483955 URB2Q14146 1524 aaKnown RBP15.27■□□□□ 0.04
SHROOM4-204ENST00000483955 TOPBP1Q92547 1522 aa15.27■□□□□ 0.04
SHROOM4-204ENST00000483955 TRIM41Q8WV44 630 aa15.22■□□□□ 0.03
SHROOM4-204ENST00000483955 FGD5Q6ZNL6 1462 aa15.19■□□□□ 0.02
SHROOM4-204ENST00000483955 POLA1P09884 1462 aaPredicted RBP15.17■□□□□ 0.02
SHROOM4-204ENST00000483955 CUX2O14529 1486 aa15.14■□□□□ 0.01
SHROOM4-204ENST00000483955 SOGA1O94964 1423 aa15.1■□□□□ 0.01
SHROOM4-204ENST00000483955 IFT140Q96RY7 1462 aa15.1■□□□□ 0.01
SHROOM4-204ENST00000483955 ABCA10Q8WWZ4 1543 aa15.08■□□□□ 0.01
SHROOM4-204ENST00000483955 TARBP1Q13395 1621 aaKnown RBP15.07■□□□□ 0
SHROOM4-204ENST00000483955 WDR97A6NE52 1622 aa15.06■□□□□ 0
SHROOM4-204ENST00000483955 RAD54L2Q9Y4B4 1467 aa15.06■□□□□ 0
SHROOM4-204ENST00000483955 EEA1Q15075 1411 aa15.02■□□□□ -0
SHROOM4-204ENST00000483955 KIF27Q86VH2 1401 aa15.01□□□□□ -0.01
SHROOM4-204ENST00000483955 ABCA5Q8WWZ7 1642 aa14.99□□□□□ -0.01
SHROOM4-204ENST00000483955 EIF4G3O43432 1585 aaKnown RBP14.96□□□□□ -0.01
SHROOM4-204ENST00000483955 GAPVD1Q14C86 1478 aa14.95□□□□□ -0.02
SHROOM4-204ENST00000483955 ZNF608Q9ULD9 1512 aaPredicted RBP14.94□□□□□ -0.02
SHROOM4-204ENST00000483955 TDRD9Q8NDG6 1382 aaKnown RBP14.94□□□□□ -0.02
SHROOM4-204ENST00000483955 ERICH3Q5RHP9 1530 aa14.92□□□□□ -0.02
SHROOM4-204ENST00000483955 PBRM1Q86U86 1689 aa14.91□□□□□ -0.02
SHROOM4-204ENST00000483955 GRIN2BQ13224 1484 aa14.91□□□□□ -0.02
SHROOM4-204ENST00000483955 RUSC2Q8N2Y8 1516 aa14.91□□□□□ -0.02
SHROOM4-204ENST00000483955 AQRO60306 1485 aaKnown RBP eCLIP14.9□□□□□ -0.02
SHROOM4-204ENST00000483955 CUL7Q14999 1698 aa14.88□□□□□ -0.03
SHROOM4-204ENST00000483955 IGF1RP08069 1367 aa14.85□□□□□ -0.03
SHROOM4-204ENST00000483955 MAGI1Q96QZ7 1491 aaPredicted RBP14.85□□□□□ -0.03
SHROOM4-204ENST00000483955 FAM9AQ8IZU1 332 aaPredicted RBP14.85□□□□□ -0.03
SHROOM4-204ENST00000483955 CSRNP3Q8WYN3 585 aa14.85□□□□□ -0.03
SHROOM4-204ENST00000483955 SNAPC4Q5SXM2 1469 aa14.82□□□□□ -0.04
SHROOM4-204ENST00000483955 ADAMTS12P58397 1594 aa14.82□□□□□ -0.04
SHROOM4-204ENST00000483955 KIF21BO75037 1637 aa14.81□□□□□ -0.04
SHROOM4-204ENST00000483955 PRXQ9BXM0 1461 aa14.81□□□□□ -0.04
SHROOM4-204ENST00000483955 CARMIL1Q5VZK9 1371 aa14.8□□□□□ -0.04
SHROOM4-204ENST00000483955 FHAD1B1AJZ9 1412 aa14.8□□□□□ -0.04
SHROOM4-204ENST00000483955 RAPGEF2Q9Y4G8 1499 aa14.78□□□□□ -0.04
SHROOM4-204ENST00000483955 SYNJ2O15056 1496 aa14.77□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms