RNA–Protein interactions for RNA: ENST00000483142.5

HDAC9-224, Transcript of histone deacetylase 9, humanhuman

TSL 3

Gene HDAC9, Length 305 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-224ENST00000483142 AEBP2Q6ZN18 517 aaPredicted RBP11.51□□□□□ -0.57
HDAC9-224ENST00000483142 CHIC1Q5VXU3 224 aa11.44□□□□□ -0.58
HDAC9-224ENST00000483142 NISCHQ9Y2I1 1504 aa11.14□□□□□ -0.63
HDAC9-224ENST00000483142 PHF23Q9BUL5 403 aaPredicted RBP10.18□□□□□ -0.78
HDAC9-224ENST00000483142 CCDC180Q9P1Z9 1646 aa9.95□□□□□ -0.82
HDAC9-224ENST00000483142 SENP3Q9H4L4 574 aaPredicted RBP9.58□□□□□ -0.88
HDAC9-224ENST00000483142 ZCCHC6Q5VYS8 1495 aaKnown RBP9.39□□□□□ -0.91
HDAC9-224ENST00000483142 PLPPR3Q6T4P5 718 aa9.34□□□□□ -0.91
HDAC9-224ENST00000483142 ABCC9O60706 1549 aa9.33□□□□□ -0.92
HDAC9-224ENST00000483142 MYO15BQ96JP2 1530 aa9.33□□□□□ -0.92
HDAC9-224ENST00000483142 DCAF1Q9Y4B6 1507 aa9.33□□□□□ -0.92
HDAC9-224ENST00000483142 NACADO15069 1562 aa9.23□□□□□ -0.93
HDAC9-224ENST00000483142 RB1CC1Q8TDY2 1594 aa9.18□□□□□ -0.94
HDAC9-224ENST00000483142 UNC13AQ9UPW8 1703 aa9.01□□□□□ -0.97
HDAC9-224ENST00000483142 SHROOM4Q9ULL8 1493 aa8.96□□□□□ -0.97
HDAC9-224ENST00000483142 FOXD1Q16676 465 aa8.95□□□□□ -0.98
HDAC9-224ENST00000483142 SCRIBQ14160 1630 aa8.94□□□□□ -0.98
HDAC9-224ENST00000483142 BICRAQ9NZM4 1560 aa8.92□□□□□ -0.98
HDAC9-224ENST00000483142 PPP6R1Q9UPN7 881 aa8.88□□□□□ -0.99
HDAC9-224ENST00000483142 DCAF8L2P0C7V8 631 aa8.86□□□□□ -0.99
HDAC9-224ENST00000483142 ADRA2BP18089 450 aa8.86□□□□□ -0.99
HDAC9-224ENST00000483142 EIF4G1Q04637 1599 aaKnown RBP8.65□□□□□ -1.03
HDAC9-224ENST00000483142 BAZ1AQ9NRL2 1556 aaPredicted RBP8.65□□□□□ -1.03
HDAC9-224ENST00000483142 SMARCA4P51532 1647 aa8.64□□□□□ -1.03
HDAC9-224ENST00000483142 PABPN1Q86U42 306 aaKnown RBP eCLIP8.63□□□□□ -1.03
HDAC9-224ENST00000483142 PEG3Q9GZU2 1588 aa8.62□□□□□ -1.03
HDAC9-224ENST00000483142 CECR2Q9BXF3 1484 aa8.6□□□□□ -1.03
HDAC9-224ENST00000483142 MROH2BQ7Z745 1585 aa8.56□□□□□ -1.04
HDAC9-224ENST00000483142 HMGXB3Q12766 1538 aa8.54□□□□□ -1.04
HDAC9-224ENST00000483142 CC2D2AQ9P2K1 1620 aa8.54□□□□□ -1.04
HDAC9-224ENST00000483142 SMARCA2P51531 1590 aa8.53□□□□□ -1.04
HDAC9-224ENST00000483142 RSF1Q96T23 1441 aaPredicted RBP8.51□□□□□ -1.05
HDAC9-224ENST00000483142 ATAD2BQ9ULI0 1458 aa8.5□□□□□ -1.05
HDAC9-224ENST00000483142 NCAPD3P42695 1498 aa8.49□□□□□ -1.05
HDAC9-224ENST00000483142 KCNA4P22459 653 aa8.47□□□□□ -1.05
HDAC9-224ENST00000483142 WIZO95785 1651 aa8.46□□□□□ -1.05
HDAC9-224ENST00000483142 TOP2AP11388 1531 aaKnown RBP8.46□□□□□ -1.05
HDAC9-224ENST00000483142 BAZ1BQ9UIG0 1483 aaKnown RBP8.42□□□□□ -1.06
HDAC9-224ENST00000483142 PIAS4Q8N2W9 510 aaPredicted RBP8.41□□□□□ -1.06
HDAC9-224ENST00000483142 DNAJC5BQ9UF47 199 aa8.33□□□□□ -1.08
HDAC9-224ENST00000483142 PPP4R3CPQ6ZMV5 832 aa8.3□□□□□ -1.08
HDAC9-224ENST00000483142 PRDM2Q13029 1718 aa8.29□□□□□ -1.08
HDAC9-224ENST00000483142 LAMC3Q9Y6N6 1575 aa8.27□□□□□ -1.09
HDAC9-224ENST00000483142 CCDC88BA6NC98 1476 aa8.26□□□□□ -1.09
HDAC9-224ENST00000483142 CFTRP13569 1480 aa8.24□□□□□ -1.09
HDAC9-224ENST00000483142 CADPSQ9ULU8 1353 aa8.19□□□□□ -1.1
HDAC9-224ENST00000483142 SUPT5HO00267 1087 aaKnown RBP8.18□□□□□ -1.1
HDAC9-224ENST00000483142 NESP48681 1621 aa8.15□□□□□ -1.1
HDAC9-224ENST00000483142 KIF21AQ7Z4S6 1674 aa8.14□□□□□ -1.11
HDAC9-224ENST00000483142 THOC2Q8NI27 1593 aaKnown RBP8.14□□□□□ -1.11
HDAC9-224ENST00000483142 PDS5BQ9NTI5 1447 aa8.12□□□□□ -1.11
HDAC9-224ENST00000483142 EHMT2Q96KQ7 1210 aa8.11□□□□□ -1.11
HDAC9-224ENST00000483142 FANCD2Q9BXW9 1451 aa8.11□□□□□ -1.11
HDAC9-224ENST00000483142 WDR62O43379 1518 aa8.1□□□□□ -1.11
HDAC9-224ENST00000483142 CEP164Q9UPV0 1460 aa8.1□□□□□ -1.11
HDAC9-224ENST00000483142 BIVM-ERCC5R4GMW8 1640 aa8.08□□□□□ -1.12
HDAC9-224ENST00000483142 NPM3O75607 178 aaKnown RBP8.08□□□□□ -1.12
HDAC9-224ENST00000483142 MRC2Q9UBG0 1479 aa8.07□□□□□ -1.12
HDAC9-224ENST00000483142 DNMBPQ6XZF7 1577 aa8.07□□□□□ -1.12
HDAC9-224ENST00000483142 NCBP3Q53F19 620 aaKnown RBP8.06□□□□□ -1.12
HDAC9-224ENST00000483142 TOP2BQ02880 1626 aa8.05□□□□□ -1.12
HDAC9-224ENST00000483142 URB2Q14146 1524 aaKnown RBP8.04□□□□□ -1.12
HDAC9-224ENST00000483142 SLC4A1APQ9BWU0 796 aaKnown RBP8.04□□□□□ -1.12
HDAC9-224ENST00000483142 SYNJ1O43426 1573 aa8.04□□□□□ -1.12
HDAC9-224ENST00000483142 ABCC8Q09428 1581 aa8.04□□□□□ -1.12
HDAC9-224ENST00000483142 CUX1P39880 1505 aa8.03□□□□□ -1.12
HDAC9-224ENST00000483142 MSH5O43196 834 aa8.03□□□□□ -1.12
HDAC9-224ENST00000483142 TOPBP1Q92547 1522 aa8.03□□□□□ -1.12
HDAC9-224ENST00000483142 ERCC6Q03468 1493 aa8.02□□□□□ -1.13
HDAC9-224ENST00000483142 WDR97A6NE52 1622 aa8.02□□□□□ -1.13
HDAC9-224ENST00000483142 WRNQ14191 1432 aaPredicted RBP eCLIP8.02□□□□□ -1.13
HDAC9-224ENST00000483142 CUX2O14529 1486 aa8□□□□□ -1.13
HDAC9-224ENST00000483142 CSRNP3Q8WYN3 585 aa8□□□□□ -1.13
HDAC9-224ENST00000483142 CNKSR2Q8WXI2 1034 aa7.99□□□□□ -1.13
HDAC9-224ENST00000483142 TARBP1Q13395 1621 aaKnown RBP7.97□□□□□ -1.13
HDAC9-224ENST00000483142 POLA1P09884 1462 aaPredicted RBP7.97□□□□□ -1.13
HDAC9-224ENST00000483142 FGD5Q6ZNL6 1462 aa7.96□□□□□ -1.13
HDAC9-224ENST00000483142 IFT140Q96RY7 1462 aa7.94□□□□□ -1.14
HDAC9-224ENST00000483142 ABCA10Q8WWZ4 1543 aa7.94□□□□□ -1.14
HDAC9-224ENST00000483142 ABCA5Q8WWZ7 1642 aa7.94□□□□□ -1.14
HDAC9-224ENST00000483142 MAPK8IP2Q13387 824 aaPredicted RBP7.94□□□□□ -1.14
HDAC9-224ENST00000483142 SCAF1Q9H7N4 1312 aaKnown RBP7.92□□□□□ -1.14
HDAC9-224ENST00000483142 EIF4G3O43432 1585 aaKnown RBP7.91□□□□□ -1.14
HDAC9-224ENST00000483142 ZBTB22O15209 634 aa7.89□□□□□ -1.15
HDAC9-224ENST00000483142 PBRM1Q86U86 1689 aa7.87□□□□□ -1.15
HDAC9-224ENST00000483142 RAD54L2Q9Y4B4 1467 aa7.87□□□□□ -1.15
HDAC9-224ENST00000483142 ERICH3Q5RHP9 1530 aa7.86□□□□□ -1.15
HDAC9-224ENST00000483142 SOGA1O94964 1423 aa7.85□□□□□ -1.15
HDAC9-224ENST00000483142 EEA1Q15075 1411 aa7.85□□□□□ -1.15
HDAC9-224ENST00000483142 ADAMTS12P58397 1594 aa7.84□□□□□ -1.15
HDAC9-224ENST00000483142 ZNF608Q9ULD9 1512 aaPredicted RBP7.84□□□□□ -1.15
HDAC9-224ENST00000483142 CUL7Q14999 1698 aa7.84□□□□□ -1.15
HDAC9-224ENST00000483142 KIF27Q86VH2 1401 aa7.82□□□□□ -1.16
HDAC9-224ENST00000483142 GRIN2BQ13224 1484 aa7.81□□□□□ -1.16
HDAC9-224ENST00000483142 GAPVD1Q14C86 1478 aa7.81□□□□□ -1.16
HDAC9-224ENST00000483142 MAGI1Q96QZ7 1491 aaPredicted RBP7.81□□□□□ -1.16
HDAC9-224ENST00000483142 KIF21BO75037 1637 aa7.8□□□□□ -1.16
HDAC9-224ENST00000483142 RNF216Q9NWF9 866 aaPredicted RBP7.78□□□□□ -1.16
HDAC9-224ENST00000483142 SNAPC4Q5SXM2 1469 aa7.77□□□□□ -1.17
HDAC9-224ENST00000483142 PRXQ9BXM0 1461 aa7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms