RNA–Protein interactions for RNA: ENST00000482928.5

TSPAN1-208, Transcript of tetraspanin 1, humanhuman

TSL 2

Gene TSPAN1, Length 844 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN1-208ENST00000482928 NISCHQ9Y2I1 1504 aa28.43■■■□□ 2.14
TSPAN1-208ENST00000482928 ABCC9O60706 1549 aa26.5■■□□□ 1.83
TSPAN1-208ENST00000482928 DNAJC5BQ9UF47 199 aa26.27■■□□□ 1.8
TSPAN1-208ENST00000482928 DNAJC5Q9H3Z4 198 aa25.43■■□□□ 1.66
TSPAN1-208ENST00000482928 CCDC180Q9P1Z9 1646 aa24.95■■□□□ 1.58
TSPAN1-208ENST00000482928 RB1CC1Q8TDY2 1594 aa24.49■■□□□ 1.51
TSPAN1-208ENST00000482928 PABPN1Q86U42 306 aaKnown RBP eCLIP24.31■■□□□ 1.48
TSPAN1-208ENST00000482928 UNC13AQ9UPW8 1703 aa24.05■■□□□ 1.44
TSPAN1-208ENST00000482928 CECR2Q9BXF3 1484 aa24.05■■□□□ 1.44
TSPAN1-208ENST00000482928 CC2D2AQ9P2K1 1620 aa23.89■■□□□ 1.42
TSPAN1-208ENST00000482928 NACADO15069 1562 aa23.85■■□□□ 1.41
TSPAN1-208ENST00000482928 ZCCHC6Q5VYS8 1495 aaKnown RBP23.83■■□□□ 1.41
TSPAN1-208ENST00000482928 BICRAQ9NZM4 1560 aa23.8■■□□□ 1.4
TSPAN1-208ENST00000482928 TRIM41Q8WV44 630 aa23.69■■□□□ 1.38
TSPAN1-208ENST00000482928 DCAF8L2P0C7V8 631 aa23.65■■□□□ 1.38
TSPAN1-208ENST00000482928 CUX2O14529 1486 aa23.56■■□□□ 1.36
TSPAN1-208ENST00000482928 DCAF1Q9Y4B6 1507 aa23.51■■□□□ 1.35
TSPAN1-208ENST00000482928 EIF4G1Q04637 1599 aaKnown RBP23.39■■□□□ 1.33
TSPAN1-208ENST00000482928 MYO15BQ96JP2 1530 aa23.32■■□□□ 1.32
TSPAN1-208ENST00000482928 SHROOM4Q9ULL8 1493 aa23.3■■□□□ 1.32
TSPAN1-208ENST00000482928 ERCC6Q03468 1493 aa23.05■■□□□ 1.28
TSPAN1-208ENST00000482928 SCRIBQ14160 1630 aa22.9■■□□□ 1.26
TSPAN1-208ENST00000482928 AEBP2Q6ZN18 517 aaPredicted RBP22.79■■□□□ 1.24
TSPAN1-208ENST00000482928 THOC2Q8NI27 1593 aaKnown RBP22.46■■□□□ 1.19
TSPAN1-208ENST00000482928 NESP48681 1621 aa22.26■■□□□ 1.15
TSPAN1-208ENST00000482928 BAZ1AQ9NRL2 1556 aaPredicted RBP22.25■■□□□ 1.15
TSPAN1-208ENST00000482928 SMARCA2P51531 1590 aa22.18■■□□□ 1.14
TSPAN1-208ENST00000482928 RIMBP3CA6NJZ7 1639 aa22.17■■□□□ 1.14
TSPAN1-208ENST00000482928 RIMBP3BA6NNM3 1639 aa22.17■■□□□ 1.14
TSPAN1-208ENST00000482928 RIMBP3Q9UFD9 1639 aa22.17■■□□□ 1.14
TSPAN1-208ENST00000482928 SUPT5HO00267 1087 aaKnown RBP22.13■■□□□ 1.13
TSPAN1-208ENST00000482928 ILDR1Q86SU0 546 aaPredicted RBP22.13■■□□□ 1.13
TSPAN1-208ENST00000482928 TRHP20396 242 aaPredicted RBP22.11■■□□□ 1.13
TSPAN1-208ENST00000482928 OSCARQ8IYS5 282 aa22.1■■□□□ 1.13
TSPAN1-208ENST00000482928 KIF21AQ7Z4S6 1674 aa22.04■■□□□ 1.12
TSPAN1-208ENST00000482928 NCAPD3P42695 1498 aa21.96■■□□□ 1.11
TSPAN1-208ENST00000482928 RSF1Q96T23 1441 aaPredicted RBP21.95■■□□□ 1.1
TSPAN1-208ENST00000482928 SMARCA4P51532 1647 aa21.92■■□□□ 1.1
TSPAN1-208ENST00000482928 MROH2BQ7Z745 1585 aa21.92■■□□□ 1.1
TSPAN1-208ENST00000482928 ARHGEF11O15085 1522 aa21.86■■□□□ 1.09
TSPAN1-208ENST00000482928 LAMC3Q9Y6N6 1575 aa21.86■■□□□ 1.09
TSPAN1-208ENST00000482928 WIZO95785 1651 aa21.75■■□□□ 1.07
TSPAN1-208ENST00000482928 HMGXB3Q12766 1538 aa21.73■■□□□ 1.07
TSPAN1-208ENST00000482928 CYB5RLQ6IPT4 315 aa21.72■■□□□ 1.07
TSPAN1-208ENST00000482928 PDS5BQ9NTI5 1447 aa21.72■■□□□ 1.07
TSPAN1-208ENST00000482928 WDR62O43379 1518 aa21.7■■□□□ 1.07
TSPAN1-208ENST00000482928 MRC2Q9UBG0 1479 aa21.69■■□□□ 1.06
TSPAN1-208ENST00000482928 ATAD2BQ9ULI0 1458 aa21.67■■□□□ 1.06
TSPAN1-208ENST00000482928 PEG3Q9GZU2 1588 aa21.62■■□□□ 1.05
TSPAN1-208ENST00000482928 TOP2AP11388 1531 aaKnown RBP21.58■■□□□ 1.04
TSPAN1-208ENST00000482928 BAZ1BQ9UIG0 1483 aaKnown RBP21.52■■□□□ 1.04
TSPAN1-208ENST00000482928 ARAP1Q96P48 1450 aa21.52■■□□□ 1.03
TSPAN1-208ENST00000482928 CCDC88BA6NC98 1476 aa21.3■■□□□ 1
TSPAN1-208ENST00000482928 CEP164Q9UPV0 1460 aa21.26■□□□□ 0.99
TSPAN1-208ENST00000482928 CADPSQ9ULU8 1353 aa21.2■□□□□ 0.98
TSPAN1-208ENST00000482928 CHD1O14646 1710 aa21.15■□□□□ 0.98
TSPAN1-208ENST00000482928 FANCD2Q9BXW9 1451 aa21.04■□□□□ 0.96
TSPAN1-208ENST00000482928 ZNF608Q9ULD9 1512 aaPredicted RBP21■□□□□ 0.95
TSPAN1-208ENST00000482928 CHIC1Q5VXU3 224 aa21■□□□□ 0.95
TSPAN1-208ENST00000482928 LMTK3Q96Q04 1460 aa21■□□□□ 0.95
TSPAN1-208ENST00000482928 URB2Q14146 1524 aaKnown RBP20.98■□□□□ 0.95
TSPAN1-208ENST00000482928 ERCC6L2Q5T890 1561 aa20.97■□□□□ 0.95
TSPAN1-208ENST00000482928 KDM4FA0A1W2PPD8 638 aa20.94■□□□□ 0.94
TSPAN1-208ENST00000482928 EIF4G3O43432 1585 aaKnown RBP20.91■□□□□ 0.94
TSPAN1-208ENST00000482928 CFTRP13569 1480 aa20.9■□□□□ 0.94
TSPAN1-208ENST00000482928 FBXO41Q8TF61 875 aa20.9■□□□□ 0.94
TSPAN1-208ENST00000482928 PRDM2Q13029 1718 aa20.86■□□□□ 0.93
TSPAN1-208ENST00000482928 IFT140Q96RY7 1462 aa20.86■□□□□ 0.93
TSPAN1-208ENST00000482928 SOCS7O14512 581 aa20.82■□□□□ 0.92
TSPAN1-208ENST00000482928 HECW2Q9P2P5 1572 aa20.81■□□□□ 0.92
TSPAN1-208ENST00000482928 FBLN2P98095 1184 aa20.8■□□□□ 0.92
TSPAN1-208ENST00000482928 ABCC8Q09428 1581 aa20.79■□□□□ 0.92
TSPAN1-208ENST00000482928 KIF13AQ9H1H9 1805 aa20.76■□□□□ 0.91
TSPAN1-208ENST00000482928 WRNQ14191 1432 aaPredicted RBP eCLIP20.74■□□□□ 0.91
TSPAN1-208ENST00000482928 CLASP1Q7Z460 1538 aa20.73■□□□□ 0.91
TSPAN1-208ENST00000482928 GAPVD1Q14C86 1478 aa20.63■□□□□ 0.89
TSPAN1-208ENST00000482928 ILDR2Q71H61 639 aa20.62■□□□□ 0.89
TSPAN1-208ENST00000482928 SYNJ1O43426 1573 aa20.6■□□□□ 0.89
TSPAN1-208ENST00000482928 TOP2BQ02880 1626 aa20.57■□□□□ 0.88
TSPAN1-208ENST00000482928 KDM6BO15054 1643 aa20.56■□□□□ 0.88
TSPAN1-208ENST00000482928 BIVM-ERCC5R4GMW8 1640 aa20.56■□□□□ 0.88
TSPAN1-208ENST00000482928 AQRO60306 1485 aaKnown RBP eCLIP20.56■□□□□ 0.88
TSPAN1-208ENST00000482928 CUX1P39880 1505 aa20.53■□□□□ 0.88
TSPAN1-208ENST00000482928 ADGRL1O94910 1474 aa20.49■□□□□ 0.87
TSPAN1-208ENST00000482928 DISP3Q9P2K9 1392 aa20.48■□□□□ 0.87
TSPAN1-208ENST00000482928 SYNJ2O15056 1496 aa20.48■□□□□ 0.87
TSPAN1-208ENST00000482928 DNMBPQ6XZF7 1577 aa20.47■□□□□ 0.87
TSPAN1-208ENST00000482928 TOPBP1Q92547 1522 aa20.45■□□□□ 0.86
TSPAN1-208ENST00000482928 FAM9AQ8IZU1 332 aaPredicted RBP20.45■□□□□ 0.86
TSPAN1-208ENST00000482928 TARBP1Q13395 1621 aaKnown RBP20.42■□□□□ 0.86
TSPAN1-208ENST00000482928 FGD5Q6ZNL6 1462 aa20.38■□□□□ 0.85
TSPAN1-208ENST00000482928 EEA1Q15075 1411 aa20.38■□□□□ 0.85
TSPAN1-208ENST00000482928 SNAPC4Q5SXM2 1469 aa20.37■□□□□ 0.85
TSPAN1-208ENST00000482928 SOGA1O94964 1423 aa20.34■□□□□ 0.85
TSPAN1-208ENST00000482928 CHMP7Q8WUX9 453 aaPredicted RBP20.32■□□□□ 0.84
TSPAN1-208ENST00000482928 POLA1P09884 1462 aaPredicted RBP20.29■□□□□ 0.84
TSPAN1-208ENST00000482928 TSPOAP1O95153 1857 aa20.28■□□□□ 0.84
TSPAN1-208ENST00000482928 FAM69CQ0P6D2 419 aa20.28■□□□□ 0.84
TSPAN1-208ENST00000482928 KIF27Q86VH2 1401 aa20.27■□□□□ 0.83
TSPAN1-208ENST00000482928 ABCC10Q5T3U5 1492 aa20.25■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms