RNA–Protein interactions for RNA: ENST00000481385.6

PHF3-204, Transcript of PHD finger protein 3, humanhuman

TSL 2

Gene PHF3, Length 2,787 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHF3-204ENST00000481385 NISCHQ9Y2I1 1504 aa29.96■■■□□ 2.39
PHF3-204ENST00000481385 CCDC180Q9P1Z9 1646 aa25.56■■□□□ 1.68
PHF3-204ENST00000481385 SHROOM4Q9ULL8 1493 aa25.36■■□□□ 1.65
PHF3-204ENST00000481385 ZCCHC6Q5VYS8 1495 aaKnown RBP25.32■■□□□ 1.64
PHF3-204ENST00000481385 DCAF8L2P0C7V8 631 aa24.82■■□□□ 1.56
PHF3-204ENST00000481385 SUPT5HO00267 1087 aaKnown RBP24.72■■□□□ 1.55
PHF3-204ENST00000481385 DCAF1Q9Y4B6 1507 aa24.57■■□□□ 1.52
PHF3-204ENST00000481385 CHIC1Q5VXU3 224 aa23.97■■□□□ 1.43
PHF3-204ENST00000481385 SCRIBQ14160 1630 aa23.94■■□□□ 1.42
PHF3-204ENST00000481385 MYO15BQ96JP2 1530 aa23.94■■□□□ 1.42
PHF3-204ENST00000481385 ABCC9O60706 1549 aa23.87■■□□□ 1.41
PHF3-204ENST00000481385 NACADO15069 1562 aa23.67■■□□□ 1.38
PHF3-204ENST00000481385 RSF1Q96T23 1441 aaPredicted RBP23.63■■□□□ 1.37
PHF3-204ENST00000481385 CECR2Q9BXF3 1484 aa23.42■■□□□ 1.34
PHF3-204ENST00000481385 RB1CC1Q8TDY2 1594 aa23.37■■□□□ 1.33
PHF3-204ENST00000481385 MROH2BQ7Z745 1585 aa23.31■■□□□ 1.32
PHF3-204ENST00000481385 LOC105371045A0A1W2PR82 267 aa23.25■■□□□ 1.31
PHF3-204ENST00000481385 WIZO95785 1651 aa23.16■■□□□ 1.3
PHF3-204ENST00000481385 UNC13AQ9UPW8 1703 aa23.04■■□□□ 1.28
PHF3-204ENST00000481385 TRIM41Q8WV44 630 aa23.03■■□□□ 1.28
PHF3-204ENST00000481385 BAZ1AQ9NRL2 1556 aaPredicted RBP23■■□□□ 1.27
PHF3-204ENST00000481385 PCGF6Q9BYE7 350 aa22.95■■□□□ 1.26
PHF3-204ENST00000481385 SMARCA4P51532 1647 aa22.87■■□□□ 1.25
PHF3-204ENST00000481385 FAM9AQ8IZU1 332 aaPredicted RBP22.85■■□□□ 1.25
PHF3-204ENST00000481385 HRCP23327 699 aa22.8■■□□□ 1.24
PHF3-204ENST00000481385 EIF4G1Q04637 1599 aaKnown RBP22.8■■□□□ 1.24
PHF3-204ENST00000481385 PABPN1Q86U42 306 aaKnown RBP eCLIP22.78■■□□□ 1.24
PHF3-204ENST00000481385 BICRAQ9NZM4 1560 aa22.78■■□□□ 1.24
PHF3-204ENST00000481385 TOP2AP11388 1531 aaKnown RBP22.78■■□□□ 1.24
PHF3-204ENST00000481385 CCDC88BA6NC98 1476 aa22.69■■□□□ 1.22
PHF3-204ENST00000481385 EHMT2Q96KQ7 1210 aa22.68■■□□□ 1.22
PHF3-204ENST00000481385 SMARCA2P51531 1590 aa22.67■■□□□ 1.22
PHF3-204ENST00000481385 ABCC8Q09428 1581 aa22.57■■□□□ 1.2
PHF3-204ENST00000481385 TRIM26Q12899 539 aaPredicted RBP22.55■■□□□ 1.2
PHF3-204ENST00000481385 PEG3Q9GZU2 1588 aa22.45■■□□□ 1.18
PHF3-204ENST00000481385 PPARGC1BQ86YN6 1023 aaKnown RBP22.43■■□□□ 1.18
PHF3-204ENST00000481385 ATAD2BQ9ULI0 1458 aa22.34■■□□□ 1.17
PHF3-204ENST00000481385 SOGA1O94964 1423 aa22.31■■□□□ 1.16
PHF3-204ENST00000481385 BAZ1BQ9UIG0 1483 aaKnown RBP22.23■■□□□ 1.15
PHF3-204ENST00000481385 RUSC2Q8N2Y8 1516 aa22.23■■□□□ 1.15
PHF3-204ENST00000481385 WRNQ14191 1432 aaPredicted RBP eCLIP22.17■■□□□ 1.14
PHF3-204ENST00000481385 SYNJ1O43426 1573 aa22.13■■□□□ 1.13
PHF3-204ENST00000481385 CSRNP3Q8WYN3 585 aa22.09■■□□□ 1.13
PHF3-204ENST00000481385 EEA1Q15075 1411 aa22.07■■□□□ 1.12
PHF3-204ENST00000481385 CEP162Q5TB80 1403 aa22.06■■□□□ 1.12
PHF3-204ENST00000481385 TNIKQ9UKE5 1360 aa22.03■■□□□ 1.12
PHF3-204ENST00000481385 UBTFP17480 764 aaKnown RBP21.95■■□□□ 1.1
PHF3-204ENST00000481385 GOLGA3Q08378 1498 aa21.94■■□□□ 1.1
PHF3-204ENST00000481385 NCAPD3P42695 1498 aa21.92■■□□□ 1.1
PHF3-204ENST00000481385 HMGXB3Q12766 1538 aa21.9■■□□□ 1.1
PHF3-204ENST00000481385 TTBK1Q5TCY1 1321 aaPredicted RBP21.88■■□□□ 1.09
PHF3-204ENST00000481385 ZEB1P37275 1124 aaPredicted RBP21.87■■□□□ 1.09
PHF3-204ENST00000481385 TOP2BQ02880 1626 aa21.84■■□□□ 1.09
PHF3-204ENST00000481385 CEP164Q9UPV0 1460 aa21.84■■□□□ 1.09
PHF3-204ENST00000481385 KIF21BO75037 1637 aa21.84■■□□□ 1.09
PHF3-204ENST00000481385 BIVM-ERCC5R4GMW8 1640 aa21.77■■□□□ 1.08
PHF3-204ENST00000481385 RAPGEF2Q9Y4G8 1499 aa21.77■■□□□ 1.08
PHF3-204ENST00000481385 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.74■■□□□ 1.07
PHF3-204ENST00000481385 CUX1P39880 1505 aa21.71■■□□□ 1.07
PHF3-204ENST00000481385 CFTRP13569 1480 aa21.7■■□□□ 1.06
PHF3-204ENST00000481385 CLIP1P30622 1438 aa21.69■■□□□ 1.06
PHF3-204ENST00000481385 RANGAP1P46060 587 aaPredicted RBP21.61■■□□□ 1.05
PHF3-204ENST00000481385 CCER1Q8TC90 406 aaPredicted RBP21.6■■□□□ 1.05
PHF3-204ENST00000481385 PRXQ9BXM0 1461 aa21.57■■□□□ 1.04
PHF3-204ENST00000481385 VPS8Q8N3P4 1428 aa21.57■■□□□ 1.04
PHF3-204ENST00000481385 ERICH3Q5RHP9 1530 aa21.52■■□□□ 1.04
PHF3-204ENST00000481385 CC2D2AQ9P2K1 1620 aa21.51■■□□□ 1.03
PHF3-204ENST00000481385 PRDM2Q13029 1718 aa21.49■■□□□ 1.03
PHF3-204ENST00000481385 KIF27Q86VH2 1401 aa21.48■■□□□ 1.03
PHF3-204ENST00000481385 CADPSQ9ULU8 1353 aa21.48■■□□□ 1.03
PHF3-204ENST00000481385 ARAP1Q96P48 1450 aa21.42■■□□□ 1.02
PHF3-204ENST00000481385 HNRNPUL2Q1KMD3 747 aaKnown RBP21.36■■□□□ 1.01
PHF3-204ENST00000481385 CUX2O14529 1486 aa21.35■■□□□ 1.01
PHF3-204ENST00000481385 APLP2Q06481 763 aa21.34■■□□□ 1.01
PHF3-204ENST00000481385 FGD5Q6ZNL6 1462 aa21.33■■□□□ 1.01
PHF3-204ENST00000481385 IGF1RP08069 1367 aa21.32■■□□□ 1
PHF3-204ENST00000481385 FANCD2Q9BXW9 1451 aa21.28■■□□□ 1
PHF3-204ENST00000481385 ARHGAP35Q9NRY4 1499 aa21.26■□□□□ 0.99
PHF3-204ENST00000481385 KANK4Q5T7N3 995 aaPredicted RBP21.26■□□□□ 0.99
PHF3-204ENST00000481385 NESP48681 1621 aa21.25■□□□□ 0.99
PHF3-204ENST00000481385 CARMIL1Q5VZK9 1371 aa21.19■□□□□ 0.98
PHF3-204ENST00000481385 RAD54L2Q9Y4B4 1467 aa21.16■□□□□ 0.98
PHF3-204ENST00000481385 DNMBPQ6XZF7 1577 aa21.14■□□□□ 0.97
PHF3-204ENST00000481385 TOPBP1Q92547 1522 aa21.13■□□□□ 0.97
PHF3-204ENST00000481385 POLA1P09884 1462 aaPredicted RBP21.12■□□□□ 0.97
PHF3-204ENST00000481385 DNAJC5BQ9UF47 199 aa21.11■□□□□ 0.97
PHF3-204ENST00000481385 ABCA10Q8WWZ4 1543 aa21.07■□□□□ 0.96
PHF3-204ENST00000481385 DIEXFQ68CQ4 756 aaKnown RBP21.06■□□□□ 0.96
PHF3-204ENST00000481385 RRBP1Q9P2E9 1410 aaKnown RBP21.04■□□□□ 0.96
PHF3-204ENST00000481385 URB2Q14146 1524 aaKnown RBP21.02■□□□□ 0.96
PHF3-204ENST00000481385 LAMC3Q9Y6N6 1575 aa21■□□□□ 0.95
PHF3-204ENST00000481385 TIAM1Q13009 1591 aa20.97■□□□□ 0.95
PHF3-204ENST00000481385 P3H3Q8IVL6 736 aa20.97■□□□□ 0.95
PHF3-204ENST00000481385 ZNF316A6NFI3 1004 aaPredicted RBP20.97■□□□□ 0.95
PHF3-204ENST00000481385 DHX57Q6P158 1386 aaKnown RBP20.95■□□□□ 0.94
PHF3-204ENST00000481385 CCNB3Q8WWL7 1395 aa20.95■□□□□ 0.94
PHF3-204ENST00000481385 WDR97A6NE52 1622 aa20.93■□□□□ 0.94
PHF3-204ENST00000481385 FHOD3Q2V2M9 1422 aa20.91■□□□□ 0.94
PHF3-204ENST00000481385 PCF11O94913 1555 aaKnown RBP20.91■□□□□ 0.94
PHF3-204ENST00000481385 MAP3K1Q13233 1512 aa20.9■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms