RNA–Protein interactions for RNA: ENST00000480158.1

HERC4-210, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 2

Gene HERC4, Length 2,438 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-210ENST00000480158 NISCHQ9Y2I1 1504 aa14.93□□□□□ -0.02
HERC4-210ENST00000480158 CHIC1Q5VXU3 224 aa13.64□□□□□ -0.23
HERC4-210ENST00000480158 AEBP2Q6ZN18 517 aaPredicted RBP13.31□□□□□ -0.28
HERC4-210ENST00000480158 CCDC180Q9P1Z9 1646 aa13.06□□□□□ -0.32
HERC4-210ENST00000480158 ABCC9O60706 1549 aa12.72□□□□□ -0.37
HERC4-210ENST00000480158 DCAF8L2P0C7V8 631 aa12.61□□□□□ -0.39
HERC4-210ENST00000480158 ZCCHC6Q5VYS8 1495 aaKnown RBP12.48□□□□□ -0.41
HERC4-210ENST00000480158 DCAF1Q9Y4B6 1507 aa12.27□□□□□ -0.44
HERC4-210ENST00000480158 NACADO15069 1562 aa12.26□□□□□ -0.45
HERC4-210ENST00000480158 RB1CC1Q8TDY2 1594 aa12.23□□□□□ -0.45
HERC4-210ENST00000480158 MYO15BQ96JP2 1530 aa12.2□□□□□ -0.46
HERC4-210ENST00000480158 SHROOM4Q9ULL8 1493 aa12.17□□□□□ -0.46
HERC4-210ENST00000480158 POTEDQ86YR6 584 aa12.16□□□□□ -0.46
HERC4-210ENST00000480158 SCRIBQ14160 1630 aa12.09□□□□□ -0.47
HERC4-210ENST00000480158 PHF23Q9BUL5 403 aaPredicted RBP12.08□□□□□ -0.48
HERC4-210ENST00000480158 PABPN1Q86U42 306 aaKnown RBP eCLIP12□□□□□ -0.49
HERC4-210ENST00000480158 UNC13AQ9UPW8 1703 aa11.95□□□□□ -0.5
HERC4-210ENST00000480158 BICRAQ9NZM4 1560 aa11.87□□□□□ -0.51
HERC4-210ENST00000480158 CECR2Q9BXF3 1484 aa11.68□□□□□ -0.54
HERC4-210ENST00000480158 SUPT5HO00267 1087 aaKnown RBP11.59□□□□□ -0.55
HERC4-210ENST00000480158 MROH2BQ7Z745 1585 aa11.56□□□□□ -0.56
HERC4-210ENST00000480158 EIF4G1Q04637 1599 aaKnown RBP11.55□□□□□ -0.56
HERC4-210ENST00000480158 BAZ1AQ9NRL2 1556 aaPredicted RBP11.54□□□□□ -0.56
HERC4-210ENST00000480158 SMARCA4P51532 1647 aa11.52□□□□□ -0.56
HERC4-210ENST00000480158 RSF1Q96T23 1441 aaPredicted RBP11.52□□□□□ -0.57
HERC4-210ENST00000480158 DNAJC5BQ9UF47 199 aa11.48□□□□□ -0.57
HERC4-210ENST00000480158 WIZO95785 1651 aa11.45□□□□□ -0.58
HERC4-210ENST00000480158 CC2D2AQ9P2K1 1620 aa11.45□□□□□ -0.58
HERC4-210ENST00000480158 ATAD2BQ9ULI0 1458 aa11.42□□□□□ -0.58
HERC4-210ENST00000480158 SMARCA2P51531 1590 aa11.37□□□□□ -0.59
HERC4-210ENST00000480158 PLPPR3Q6T4P5 718 aa11.36□□□□□ -0.59
HERC4-210ENST00000480158 BAZ1BQ9UIG0 1483 aaKnown RBP11.35□□□□□ -0.59
HERC4-210ENST00000480158 PEG3Q9GZU2 1588 aa11.34□□□□□ -0.59
HERC4-210ENST00000480158 NCAPD3P42695 1498 aa11.33□□□□□ -0.59
HERC4-210ENST00000480158 TOP2AP11388 1531 aaKnown RBP11.28□□□□□ -0.6
HERC4-210ENST00000480158 HMGXB3Q12766 1538 aa11.27□□□□□ -0.61
HERC4-210ENST00000480158 CCDC88BA6NC98 1476 aa11.21□□□□□ -0.61
HERC4-210ENST00000480158 SENP3Q9H4L4 574 aaPredicted RBP11.16□□□□□ -0.62
HERC4-210ENST00000480158 NESP48681 1621 aa11.08□□□□□ -0.63
HERC4-210ENST00000480158 CADPSQ9ULU8 1353 aa11.06□□□□□ -0.64
HERC4-210ENST00000480158 CFTRP13569 1480 aa11.03□□□□□ -0.64
HERC4-210ENST00000480158 LAMC3Q9Y6N6 1575 aa10.98□□□□□ -0.65
HERC4-210ENST00000480158 FANCD2Q9BXW9 1451 aa10.94□□□□□ -0.66
HERC4-210ENST00000480158 PDS5BQ9NTI5 1447 aa10.94□□□□□ -0.66
HERC4-210ENST00000480158 ABCC8Q09428 1581 aa10.93□□□□□ -0.66
HERC4-210ENST00000480158 ERCC6Q03468 1493 aa10.93□□□□□ -0.66
HERC4-210ENST00000480158 CEP164Q9UPV0 1460 aa10.89□□□□□ -0.67
HERC4-210ENST00000480158 KIF21AQ7Z4S6 1674 aa10.89□□□□□ -0.67
HERC4-210ENST00000480158 TRIM41Q8WV44 630 aa10.88□□□□□ -0.67
HERC4-210ENST00000480158 PRDM2Q13029 1718 aa10.87□□□□□ -0.67
HERC4-210ENST00000480158 WRNQ14191 1432 aaPredicted RBP eCLIP10.86□□□□□ -0.67
HERC4-210ENST00000480158 URB2Q14146 1524 aaKnown RBP10.82□□□□□ -0.68
HERC4-210ENST00000480158 CUX1P39880 1505 aa10.81□□□□□ -0.68
HERC4-210ENST00000480158 SYNJ1O43426 1573 aa10.81□□□□□ -0.68
HERC4-210ENST00000480158 MRC2Q9UBG0 1479 aa10.8□□□□□ -0.68
HERC4-210ENST00000480158 TOPBP1Q92547 1522 aa10.79□□□□□ -0.68
HERC4-210ENST00000480158 DNMBPQ6XZF7 1577 aa10.76□□□□□ -0.69
HERC4-210ENST00000480158 THOC2Q8NI27 1593 aaKnown RBP10.75□□□□□ -0.69
HERC4-210ENST00000480158 TOP2BQ02880 1626 aa10.75□□□□□ -0.69
HERC4-210ENST00000480158 FGD5Q6ZNL6 1462 aa10.75□□□□□ -0.69
HERC4-210ENST00000480158 FAM9AQ8IZU1 332 aaPredicted RBP10.74□□□□□ -0.69
HERC4-210ENST00000480158 WDR62O43379 1518 aa10.73□□□□□ -0.69
HERC4-210ENST00000480158 RAD54L2Q9Y4B4 1467 aa10.73□□□□□ -0.69
HERC4-210ENST00000480158 BIVM-ERCC5R4GMW8 1640 aa10.72□□□□□ -0.69
HERC4-210ENST00000480158 POLA1P09884 1462 aaPredicted RBP10.72□□□□□ -0.69
HERC4-210ENST00000480158 SOGA1O94964 1423 aa10.71□□□□□ -0.69
HERC4-210ENST00000480158 EHMT2Q96KQ7 1210 aa10.69□□□□□ -0.7
HERC4-210ENST00000480158 CUX2O14529 1486 aa10.68□□□□□ -0.7
HERC4-210ENST00000480158 TDRD9Q8NDG6 1382 aaKnown RBP10.67□□□□□ -0.7
HERC4-210ENST00000480158 RUSC2Q8N2Y8 1516 aa10.66□□□□□ -0.7
HERC4-210ENST00000480158 ZNF608Q9ULD9 1512 aaPredicted RBP10.63□□□□□ -0.71
HERC4-210ENST00000480158 ADRA2BP18089 450 aa10.63□□□□□ -0.71
HERC4-210ENST00000480158 KCNA4P22459 653 aa10.63□□□□□ -0.71
HERC4-210ENST00000480158 AQRO60306 1485 aaKnown RBP eCLIP10.63□□□□□ -0.71
HERC4-210ENST00000480158 IFT140Q96RY7 1462 aa10.63□□□□□ -0.71
HERC4-210ENST00000480158 TARBP1Q13395 1621 aaKnown RBP10.62□□□□□ -0.71
HERC4-210ENST00000480158 ABCA10Q8WWZ4 1543 aa10.61□□□□□ -0.71
HERC4-210ENST00000480158 KIF27Q86VH2 1401 aa10.6□□□□□ -0.71
HERC4-210ENST00000480158 CSRNP3Q8WYN3 585 aa10.57□□□□□ -0.72
HERC4-210ENST00000480158 GAPVD1Q14C86 1478 aa10.57□□□□□ -0.72
HERC4-210ENST00000480158 WDR97A6NE52 1622 aa10.56□□□□□ -0.72
HERC4-210ENST00000480158 IGF1RP08069 1367 aa10.55□□□□□ -0.72
HERC4-210ENST00000480158 EIF4G3O43432 1585 aaKnown RBP10.54□□□□□ -0.72
HERC4-210ENST00000480158 LOC105371045A0A1W2PR82 267 aa10.54□□□□□ -0.72
HERC4-210ENST00000480158 FBLN2P98095 1184 aa10.53□□□□□ -0.72
HERC4-210ENST00000480158 ABCA5Q8WWZ7 1642 aa10.53□□□□□ -0.72
HERC4-210ENST00000480158 EEA1Q15075 1411 aa10.51□□□□□ -0.73
HERC4-210ENST00000480158 GRIN2BQ13224 1484 aa10.51□□□□□ -0.73
HERC4-210ENST00000480158 SNAPC4Q5SXM2 1469 aa10.49□□□□□ -0.73
HERC4-210ENST00000480158 CARMIL1Q5VZK9 1371 aa10.49□□□□□ -0.73
HERC4-210ENST00000480158 PBRM1Q86U86 1689 aa10.48□□□□□ -0.73
HERC4-210ENST00000480158 UBTFP17480 764 aaKnown RBP10.47□□□□□ -0.73
HERC4-210ENST00000480158 CHMP7Q8WUX9 453 aaPredicted RBP10.47□□□□□ -0.73
HERC4-210ENST00000480158 ERICH3Q5RHP9 1530 aa10.47□□□□□ -0.73
HERC4-210ENST00000480158 RANGAP1P46060 587 aaPredicted RBP10.46□□□□□ -0.73
HERC4-210ENST00000480158 RAPGEF2Q9Y4G8 1499 aa10.45□□□□□ -0.74
HERC4-210ENST00000480158 PRXQ9BXM0 1461 aa10.44□□□□□ -0.74
HERC4-210ENST00000480158 PPP6R1Q9UPN7 881 aa10.44□□□□□ -0.74
HERC4-210ENST00000480158 FHAD1B1AJZ9 1412 aa10.43□□□□□ -0.74
HERC4-210ENST00000480158 MAGI1Q96QZ7 1491 aaPredicted RBP10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms