RNA–Protein interactions for RNA: ENST00000478462.5

MSL3-214, Transcript of MSL complex subunit 3, humanhuman

TSL 2

Gene MSL3, Length 549 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSL3-214ENST00000478462 AEBP2Q6ZN18 517 aaPredicted RBP19.91■□□□□ 0.78
MSL3-214ENST00000478462 CHIC1Q5VXU3 224 aa18.89■□□□□ 0.61
MSL3-214ENST00000478462 NISCHQ9Y2I1 1504 aa18.06■□□□□ 0.48
MSL3-214ENST00000478462 SENP3Q9H4L4 574 aaPredicted RBP17.18■□□□□ 0.34
MSL3-214ENST00000478462 PHF23Q9BUL5 403 aaPredicted RBP16.86■□□□□ 0.29
MSL3-214ENST00000478462 CCDC180Q9P1Z9 1646 aa16■□□□□ 0.15
MSL3-214ENST00000478462 FOXD1Q16676 465 aa15.98■□□□□ 0.15
MSL3-214ENST00000478462 ABCC9O60706 1549 aa15.53■□□□□ 0.08
MSL3-214ENST00000478462 PLPPR3Q6T4P5 718 aa15.42■□□□□ 0.06
MSL3-214ENST00000478462 POTEDQ86YR6 584 aa15.41■□□□□ 0.06
MSL3-214ENST00000478462 MSH5O43196 834 aa15.2■□□□□ 0.02
MSL3-214ENST00000478462 DCAF8L2P0C7V8 631 aa15.15■□□□□ 0.02
MSL3-214ENST00000478462 ZCCHC6Q5VYS8 1495 aaKnown RBP15.06■□□□□ 0
MSL3-214ENST00000478462 NACADO15069 1562 aa15.01□□□□□ -0.01
MSL3-214ENST00000478462 RB1CC1Q8TDY2 1594 aa15□□□□□ -0.01
MSL3-214ENST00000478462 MYO15BQ96JP2 1530 aa14.92□□□□□ -0.02
MSL3-214ENST00000478462 DCAF1Q9Y4B6 1507 aa14.92□□□□□ -0.02
MSL3-214ENST00000478462 PIAS4Q8N2W9 510 aaPredicted RBP14.9□□□□□ -0.02
MSL3-214ENST00000478462 UNC13AQ9UPW8 1703 aa14.69□□□□□ -0.06
MSL3-214ENST00000478462 ADRA2BP18089 450 aa14.67□□□□□ -0.06
MSL3-214ENST00000478462 PPP6R1Q9UPN7 881 aa14.64□□□□□ -0.07
MSL3-214ENST00000478462 SCRIBQ14160 1630 aa14.63□□□□□ -0.07
MSL3-214ENST00000478462 PABPN1Q86U42 306 aaKnown RBP eCLIP14.56□□□□□ -0.08
MSL3-214ENST00000478462 BICRAQ9NZM4 1560 aa14.5□□□□□ -0.09
MSL3-214ENST00000478462 SHROOM4Q9ULL8 1493 aa14.42□□□□□ -0.1
MSL3-214ENST00000478462 EIF4G1Q04637 1599 aaKnown RBP14.13□□□□□ -0.15
MSL3-214ENST00000478462 DNAJC5BQ9UF47 199 aa14.09□□□□□ -0.15
MSL3-214ENST00000478462 CECR2Q9BXF3 1484 aa14.06□□□□□ -0.16
MSL3-214ENST00000478462 CC2D2AQ9P2K1 1620 aa14.04□□□□□ -0.16
MSL3-214ENST00000478462 BAZ1AQ9NRL2 1556 aaPredicted RBP14□□□□□ -0.17
MSL3-214ENST00000478462 SMARCA4P51532 1647 aa13.99□□□□□ -0.17
MSL3-214ENST00000478462 MROH2BQ7Z745 1585 aa13.92□□□□□ -0.18
MSL3-214ENST00000478462 SMARCA2P51531 1590 aa13.88□□□□□ -0.19
MSL3-214ENST00000478462 ATAD2BQ9ULI0 1458 aa13.87□□□□□ -0.19
MSL3-214ENST00000478462 NCAPD3P42695 1498 aa13.83□□□□□ -0.2
MSL3-214ENST00000478462 PEG3Q9GZU2 1588 aa13.82□□□□□ -0.2
MSL3-214ENST00000478462 RSF1Q96T23 1441 aaPredicted RBP13.81□□□□□ -0.2
MSL3-214ENST00000478462 WIZO95785 1651 aa13.81□□□□□ -0.2
MSL3-214ENST00000478462 BAZ1BQ9UIG0 1483 aaKnown RBP13.78□□□□□ -0.2
MSL3-214ENST00000478462 HMGXB3Q12766 1538 aa13.77□□□□□ -0.21
MSL3-214ENST00000478462 SUPT5HO00267 1087 aaKnown RBP13.67□□□□□ -0.22
MSL3-214ENST00000478462 TOP2AP11388 1531 aaKnown RBP13.64□□□□□ -0.23
MSL3-214ENST00000478462 PPP4R3CPQ6ZMV5 832 aa13.58□□□□□ -0.24
MSL3-214ENST00000478462 DMRT2Q9Y5R5 561 aa13.52□□□□□ -0.25
MSL3-214ENST00000478462 SCAF1Q9H7N4 1312 aaKnown RBP13.5□□□□□ -0.25
MSL3-214ENST00000478462 CCDC88BA6NC98 1476 aa13.49□□□□□ -0.25
MSL3-214ENST00000478462 MAPK8IP2Q13387 824 aaPredicted RBP13.48□□□□□ -0.25
MSL3-214ENST00000478462 NESP48681 1621 aa13.46□□□□□ -0.25
MSL3-214ENST00000478462 CADPSQ9ULU8 1353 aa13.45□□□□□ -0.26
MSL3-214ENST00000478462 LAMC3Q9Y6N6 1575 aa13.45□□□□□ -0.26
MSL3-214ENST00000478462 CFTRP13569 1480 aa13.39□□□□□ -0.27
MSL3-214ENST00000478462 ERCC6Q03468 1493 aa13.39□□□□□ -0.27
MSL3-214ENST00000478462 PDS5BQ9NTI5 1447 aa13.38□□□□□ -0.27
MSL3-214ENST00000478462 PRDM2Q13029 1718 aa13.36□□□□□ -0.27
MSL3-214ENST00000478462 KIF21AQ7Z4S6 1674 aa13.34□□□□□ -0.27
MSL3-214ENST00000478462 KCNA4P22459 653 aa13.34□□□□□ -0.27
MSL3-214ENST00000478462 NCBP3Q53F19 620 aaKnown RBP13.31□□□□□ -0.28
MSL3-214ENST00000478462 FANCD2Q9BXW9 1451 aa13.3□□□□□ -0.28
MSL3-214ENST00000478462 CACNB1Q02641 598 aaPredicted RBP13.28□□□□□ -0.28
MSL3-214ENST00000478462 CEP164Q9UPV0 1460 aa13.27□□□□□ -0.29
MSL3-214ENST00000478462 MRC2Q9UBG0 1479 aa13.21□□□□□ -0.3
MSL3-214ENST00000478462 THOC2Q8NI27 1593 aaKnown RBP13.2□□□□□ -0.3
MSL3-214ENST00000478462 CNKSR2Q8WXI2 1034 aa13.19□□□□□ -0.3
MSL3-214ENST00000478462 WDR62O43379 1518 aa13.15□□□□□ -0.3
MSL3-214ENST00000478462 CUX2O14529 1486 aa13.15□□□□□ -0.3
MSL3-214ENST00000478462 URB2Q14146 1524 aaKnown RBP13.14□□□□□ -0.31
MSL3-214ENST00000478462 ABCC8Q09428 1581 aa13.13□□□□□ -0.31
MSL3-214ENST00000478462 TOPBP1Q92547 1522 aa13.1□□□□□ -0.31
MSL3-214ENST00000478462 DNMBPQ6XZF7 1577 aa13.1□□□□□ -0.31
MSL3-214ENST00000478462 DCAF8L1A6NGE4 600 aa13.07□□□□□ -0.32
MSL3-214ENST00000478462 CUX1P39880 1505 aa13.05□□□□□ -0.32
MSL3-214ENST00000478462 WRNQ14191 1432 aaPredicted RBP eCLIP13.05□□□□□ -0.32
MSL3-214ENST00000478462 NPM3O75607 178 aaKnown RBP13.03□□□□□ -0.32
MSL3-214ENST00000478462 EHMT2Q96KQ7 1210 aa13□□□□□ -0.33
MSL3-214ENST00000478462 TOP2BQ02880 1626 aa12.99□□□□□ -0.33
MSL3-214ENST00000478462 SYNJ1O43426 1573 aa12.99□□□□□ -0.33
MSL3-214ENST00000478462 POLA1P09884 1462 aaPredicted RBP12.99□□□□□ -0.33
MSL3-214ENST00000478462 FGD5Q6ZNL6 1462 aa12.99□□□□□ -0.33
MSL3-214ENST00000478462 BIVM-ERCC5R4GMW8 1640 aa12.99□□□□□ -0.33
MSL3-214ENST00000478462 IFT140Q96RY7 1462 aa12.98□□□□□ -0.33
MSL3-214ENST00000478462 SOGA1O94964 1423 aa12.97□□□□□ -0.33
MSL3-214ENST00000478462 RAD54L2Q9Y4B4 1467 aa12.95□□□□□ -0.34
MSL3-214ENST00000478462 TARBP1Q13395 1621 aaKnown RBP12.94□□□□□ -0.34
MSL3-214ENST00000478462 ZNF608Q9ULD9 1512 aaPredicted RBP12.9□□□□□ -0.34
MSL3-214ENST00000478462 TRIM41Q8WV44 630 aa12.9□□□□□ -0.34
MSL3-214ENST00000478462 RNF216Q9NWF9 866 aaPredicted RBP12.9□□□□□ -0.34
MSL3-214ENST00000478462 TDRD9Q8NDG6 1382 aaKnown RBP12.88□□□□□ -0.35
MSL3-214ENST00000478462 AQRO60306 1485 aaKnown RBP eCLIP12.87□□□□□ -0.35
MSL3-214ENST00000478462 RNF39Q9H2S5 420 aa12.87□□□□□ -0.35
MSL3-214ENST00000478462 WDR97A6NE52 1622 aa12.87□□□□□ -0.35
MSL3-214ENST00000478462 ABCA10Q8WWZ4 1543 aa12.87□□□□□ -0.35
MSL3-214ENST00000478462 EIF4G3O43432 1585 aaKnown RBP12.86□□□□□ -0.35
MSL3-214ENST00000478462 HOXD11P31277 338 aaPredicted RBP12.86□□□□□ -0.35
MSL3-214ENST00000478462 GAPVD1Q14C86 1478 aa12.82□□□□□ -0.36
MSL3-214ENST00000478462 SLC4A1APQ9BWU0 796 aaKnown RBP12.8□□□□□ -0.36
MSL3-214ENST00000478462 ABCA5Q8WWZ7 1642 aa12.8□□□□□ -0.36
MSL3-214ENST00000478462 PBRM1Q86U86 1689 aa12.8□□□□□ -0.36
MSL3-214ENST00000478462 GRIN2BQ13224 1484 aa12.78□□□□□ -0.36
MSL3-214ENST00000478462 KIF27Q86VH2 1401 aa12.78□□□□□ -0.36
MSL3-214ENST00000478462 FBLN2P98095 1184 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms