RNA–Protein interactions for RNA: ENST00000477605.1

CCM2-209, Transcript of CCM2 scaffold protein, humanhuman

TSL 1 (best)

Gene CCM2, Length 2,050 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-209ENST00000477605 NISCHQ9Y2I1 1504 aa37.41■■■■□ 3.58
CCM2-209ENST00000477605 CCDC180Q9P1Z9 1646 aa32.48■■■□□ 2.79
CCM2-209ENST00000477605 ABCC9O60706 1549 aa32.02■■■□□ 2.72
CCM2-209ENST00000477605 ZCCHC6Q5VYS8 1495 aaKnown RBP31.68■■■□□ 2.66
CCM2-209ENST00000477605 SHROOM4Q9ULL8 1493 aa31.53■■■□□ 2.64
CCM2-209ENST00000477605 SUPT5HO00267 1087 aaKnown RBP31.04■■■□□ 2.56
CCM2-209ENST00000477605 DCAF1Q9Y4B6 1507 aa30.92■■■□□ 2.54
CCM2-209ENST00000477605 RB1CC1Q8TDY2 1594 aa30.68■■■□□ 2.5
CCM2-209ENST00000477605 DCAF8L2P0C7V8 631 aa30.61■■■□□ 2.49
CCM2-209ENST00000477605 NACADO15069 1562 aa30.6■■■□□ 2.49
CCM2-209ENST00000477605 CHIC1Q5VXU3 224 aa30.42■■■□□ 2.46
CCM2-209ENST00000477605 MYO15BQ96JP2 1530 aa30.36■■■□□ 2.45
CCM2-209ENST00000477605 UNC13AQ9UPW8 1703 aa30■■■□□ 2.39
CCM2-209ENST00000477605 PABPN1Q86U42 306 aaKnown RBP eCLIP29.91■■■□□ 2.38
CCM2-209ENST00000477605 BICRAQ9NZM4 1560 aa29.8■■■□□ 2.36
CCM2-209ENST00000477605 HRCP23327 699 aa29.64■■■□□ 2.34
CCM2-209ENST00000477605 SCRIBQ14160 1630 aa29.64■■■□□ 2.34
CCM2-209ENST00000477605 DNAJC5BQ9UF47 199 aa29.63■■■□□ 2.33
CCM2-209ENST00000477605 RSF1Q96T23 1441 aaPredicted RBP29.59■■■□□ 2.33
CCM2-209ENST00000477605 PCGF6Q9BYE7 350 aa29.38■■■□□ 2.29
CCM2-209ENST00000477605 LOC105371045A0A1W2PR82 267 aa29.32■■■□□ 2.28
CCM2-209ENST00000477605 TRIM41Q8WV44 630 aa29.08■■■□□ 2.25
CCM2-209ENST00000477605 TRIM26Q12899 539 aaPredicted RBP29.06■■■□□ 2.24
CCM2-209ENST00000477605 EIF4G1Q04637 1599 aaKnown RBP29.01■■■□□ 2.23
CCM2-209ENST00000477605 CECR2Q9BXF3 1484 aa29.01■■■□□ 2.23
CCM2-209ENST00000477605 MROH2BQ7Z745 1585 aa28.97■■■□□ 2.23
CCM2-209ENST00000477605 CC2D2AQ9P2K1 1620 aa28.95■■■□□ 2.22
CCM2-209ENST00000477605 BAZ1AQ9NRL2 1556 aaPredicted RBP28.77■■■□□ 2.2
CCM2-209ENST00000477605 WIZO95785 1651 aa28.76■■■□□ 2.19
CCM2-209ENST00000477605 PPARGC1BQ86YN6 1023 aaKnown RBP28.68■■■□□ 2.18
CCM2-209ENST00000477605 ZEB1P37275 1124 aaPredicted RBP28.62■■■□□ 2.17
CCM2-209ENST00000477605 FAM9AQ8IZU1 332 aaPredicted RBP28.6■■■□□ 2.17
CCM2-209ENST00000477605 TOP2AP11388 1531 aaKnown RBP28.51■■■□□ 2.15
CCM2-209ENST00000477605 SMARCA4P51532 1647 aa28.44■■■□□ 2.14
CCM2-209ENST00000477605 CCDC88BA6NC98 1476 aa28.3■■■□□ 2.12
CCM2-209ENST00000477605 SMARCA2P51531 1590 aa28.28■■■□□ 2.12
CCM2-209ENST00000477605 NCAPD3P42695 1498 aa28.26■■■□□ 2.11
CCM2-209ENST00000477605 ATAD2BQ9ULI0 1458 aa28.25■■■□□ 2.11
CCM2-209ENST00000477605 EHMT2Q96KQ7 1210 aa28.14■■■□□ 2.1
CCM2-209ENST00000477605 EEA1Q15075 1411 aa28.12■■■□□ 2.09
CCM2-209ENST00000477605 ABCC8Q09428 1581 aa28.08■■■□□ 2.09
CCM2-209ENST00000477605 HMGXB3Q12766 1538 aa28.08■■■□□ 2.09
CCM2-209ENST00000477605 WRNQ14191 1432 aaPredicted RBP eCLIP28.07■■■□□ 2.08
CCM2-209ENST00000477605 PEG3Q9GZU2 1588 aa28.06■■■□□ 2.08
CCM2-209ENST00000477605 TNIKQ9UKE5 1360 aa27.98■■■□□ 2.07
CCM2-209ENST00000477605 BAZ1BQ9UIG0 1483 aaKnown RBP27.98■■■□□ 2.07
CCM2-209ENST00000477605 SOGA1O94964 1423 aa27.9■■■□□ 2.06
CCM2-209ENST00000477605 CEP162Q5TB80 1403 aa27.9■■■□□ 2.06
CCM2-209ENST00000477605 CSRNP3Q8WYN3 585 aa27.88■■■□□ 2.05
CCM2-209ENST00000477605 GOLGA3Q08378 1498 aa27.77■■■□□ 2.04
CCM2-209ENST00000477605 RUSC2Q8N2Y8 1516 aa27.7■■■□□ 2.02
CCM2-209ENST00000477605 CCER1Q8TC90 406 aaPredicted RBP27.69■■■□□ 2.02
CCM2-209ENST00000477605 NESP48681 1621 aa27.66■■■□□ 2.02
CCM2-209ENST00000477605 UBTFP17480 764 aaKnown RBP27.64■■■□□ 2.02
CCM2-209ENST00000477605 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.63■■■□□ 2.01
CCM2-209ENST00000477605 CEP164Q9UPV0 1460 aa27.63■■■□□ 2.01
CCM2-209ENST00000477605 KIF21BO75037 1637 aa27.6■■■□□ 2.01
CCM2-209ENST00000477605 ERCC6Q03468 1493 aa27.59■■■□□ 2.01
CCM2-209ENST00000477605 SYNJ1O43426 1573 aa27.57■■■□□ 2
CCM2-209ENST00000477605 LAMC3Q9Y6N6 1575 aa27.52■■■□□ 2
CCM2-209ENST00000477605 CADPSQ9ULU8 1353 aa27.42■■□□□ 1.98
CCM2-209ENST00000477605 CLIP1P30622 1438 aa27.39■■□□□ 1.98
CCM2-209ENST00000477605 CUX2O14529 1486 aa27.38■■□□□ 1.97
CCM2-209ENST00000477605 TOP2BQ02880 1626 aa27.36■■□□□ 1.97
CCM2-209ENST00000477605 PDS5BQ9NTI5 1447 aa27.35■■□□□ 1.97
CCM2-209ENST00000477605 VPS8Q8N3P4 1428 aa27.34■■□□□ 1.97
CCM2-209ENST00000477605 TTBK1Q5TCY1 1321 aaPredicted RBP27.3■■□□□ 1.96
CCM2-209ENST00000477605 KIF21AQ7Z4S6 1674 aa27.3■■□□□ 1.96
CCM2-209ENST00000477605 THOC2Q8NI27 1593 aaKnown RBP27.26■■□□□ 1.95
CCM2-209ENST00000477605 BIVM-ERCC5R4GMW8 1640 aa27.26■■□□□ 1.95
CCM2-209ENST00000477605 RAPGEF2Q9Y4G8 1499 aa27.25■■□□□ 1.95
CCM2-209ENST00000477605 CFTRP13569 1480 aa27.22■■□□□ 1.95
CCM2-209ENST00000477605 DIEXFQ68CQ4 756 aaKnown RBP27.21■■□□□ 1.95
CCM2-209ENST00000477605 SCAF1Q9H7N4 1312 aaKnown RBP27.19■■□□□ 1.94
CCM2-209ENST00000477605 ERICH3Q5RHP9 1530 aa27.19■■□□□ 1.94
CCM2-209ENST00000477605 APLP2Q06481 763 aa27.17■■□□□ 1.94
CCM2-209ENST00000477605 PRXQ9BXM0 1461 aa27.13■■□□□ 1.93
CCM2-209ENST00000477605 FANCD2Q9BXW9 1451 aa27.1■■□□□ 1.93
CCM2-209ENST00000477605 PELP1Q8IZL8 1130 aaKnown RBP27.1■■□□□ 1.93
CCM2-209ENST00000477605 MRC2Q9UBG0 1479 aa27.08■■□□□ 1.93
CCM2-209ENST00000477605 ZNF316A6NFI3 1004 aaPredicted RBP27.08■■□□□ 1.93
CCM2-209ENST00000477605 ACIN1Q9UKV3 1341 aaKnown RBP27.07■■□□□ 1.92
CCM2-209ENST00000477605 WDR62O43379 1518 aa27.01■■□□□ 1.91
CCM2-209ENST00000477605 CENPBP07199 599 aaPredicted RBP27.01■■□□□ 1.91
CCM2-209ENST00000477605 CUX1P39880 1505 aa26.99■■□□□ 1.91
CCM2-209ENST00000477605 KIF27Q86VH2 1401 aa26.99■■□□□ 1.91
CCM2-209ENST00000477605 HNRNPUL2Q1KMD3 747 aaKnown RBP26.99■■□□□ 1.91
CCM2-209ENST00000477605 PRDM2Q13029 1718 aa26.95■■□□□ 1.91
CCM2-209ENST00000477605 ARAP1Q96P48 1450 aa26.92■■□□□ 1.9
CCM2-209ENST00000477605 CLSPNQ9HAW4 1339 aa26.9■■□□□ 1.9
CCM2-209ENST00000477605 NEUROD1Q13562 356 aa26.89■■□□□ 1.9
CCM2-209ENST00000477605 URB2Q14146 1524 aaKnown RBP26.86■■□□□ 1.89
CCM2-209ENST00000477605 DNAJC5Q9H3Z4 198 aa26.81■■□□□ 1.88
CCM2-209ENST00000477605 RANGAP1P46060 587 aaPredicted RBP26.79■■□□□ 1.88
CCM2-209ENST00000477605 RRBP1Q9P2E9 1410 aaKnown RBP26.75■■□□□ 1.87
CCM2-209ENST00000477605 ARHGAP35Q9NRY4 1499 aa26.68■■□□□ 1.86
CCM2-209ENST00000477605 KANK4Q5T7N3 995 aaPredicted RBP26.67■■□□□ 1.86
CCM2-209ENST00000477605 DHX57Q6P158 1386 aaKnown RBP26.66■■□□□ 1.86
CCM2-209ENST00000477605 TOPBP1Q92547 1522 aa26.65■■□□□ 1.86
CCM2-209ENST00000477605 IGF1RP08069 1367 aa26.64■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms