RNA–Protein interactions for RNA: ENST00000477537.1

HLA-DMB-260, Transcript of major histocompatibility complex, class II, DM beta, humanhuman

Gene HLA-DMB, Length 1,919 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMB-260ENST00000477537 NISCHQ9Y2I1 1504 aa23.81■■□□□ 1.4
HLA-DMB-260ENST00000477537 CCDC180Q9P1Z9 1646 aa20.65■□□□□ 0.9
HLA-DMB-260ENST00000477537 ZCCHC6Q5VYS8 1495 aaKnown RBP20.08■□□□□ 0.81
HLA-DMB-260ENST00000477537 ABCC9O60706 1549 aa19.96■□□□□ 0.79
HLA-DMB-260ENST00000477537 SHROOM4Q9ULL8 1493 aa19.92■□□□□ 0.78
HLA-DMB-260ENST00000477537 DCAF8L2P0C7V8 631 aa19.68■□□□□ 0.74
HLA-DMB-260ENST00000477537 DCAF1Q9Y4B6 1507 aa19.6■□□□□ 0.73
HLA-DMB-260ENST00000477537 SUPT5HO00267 1087 aaKnown RBP19.37■□□□□ 0.69
HLA-DMB-260ENST00000477537 NACADO15069 1562 aa19.31■□□□□ 0.68
HLA-DMB-260ENST00000477537 RB1CC1Q8TDY2 1594 aa19.25■□□□□ 0.67
HLA-DMB-260ENST00000477537 MYO15BQ96JP2 1530 aa19.25■□□□□ 0.67
HLA-DMB-260ENST00000477537 SCRIBQ14160 1630 aa19.04■□□□□ 0.64
HLA-DMB-260ENST00000477537 UNC13AQ9UPW8 1703 aa18.96■□□□□ 0.63
HLA-DMB-260ENST00000477537 AEBP2Q6ZN18 517 aaPredicted RBP18.78■□□□□ 0.6
HLA-DMB-260ENST00000477537 PABPN1Q86U42 306 aaKnown RBP eCLIP18.78■□□□□ 0.6
HLA-DMB-260ENST00000477537 BICRAQ9NZM4 1560 aa18.73■□□□□ 0.59
HLA-DMB-260ENST00000477537 CHIC1Q5VXU3 224 aa18.72■□□□□ 0.59
HLA-DMB-260ENST00000477537 RSF1Q96T23 1441 aaPredicted RBP18.67■□□□□ 0.58
HLA-DMB-260ENST00000477537 CECR2Q9BXF3 1484 aa18.53■□□□□ 0.56
HLA-DMB-260ENST00000477537 MROH2BQ7Z745 1585 aa18.46■□□□□ 0.55
HLA-DMB-260ENST00000477537 WIZO95785 1651 aa18.35■□□□□ 0.53
HLA-DMB-260ENST00000477537 BAZ1AQ9NRL2 1556 aaPredicted RBP18.33■□□□□ 0.53
HLA-DMB-260ENST00000477537 SMARCA4P51532 1647 aa18.22■□□□□ 0.51
HLA-DMB-260ENST00000477537 EIF4G1Q04637 1599 aaKnown RBP18.19■□□□□ 0.5
HLA-DMB-260ENST00000477537 TRIM41Q8WV44 630 aa18.12■□□□□ 0.49
HLA-DMB-260ENST00000477537 TOP2AP11388 1531 aaKnown RBP18.11■□□□□ 0.49
HLA-DMB-260ENST00000477537 LOC105371045A0A1W2PR82 267 aa18.1■□□□□ 0.49
HLA-DMB-260ENST00000477537 CC2D2AQ9P2K1 1620 aa18.03■□□□□ 0.48
HLA-DMB-260ENST00000477537 DNAJC5BQ9UF47 199 aa17.99■□□□□ 0.47
HLA-DMB-260ENST00000477537 SMARCA2P51531 1590 aa17.98■□□□□ 0.47
HLA-DMB-260ENST00000477537 CCDC88BA6NC98 1476 aa17.98■□□□□ 0.47
HLA-DMB-260ENST00000477537 ATAD2BQ9ULI0 1458 aa17.95■□□□□ 0.46
HLA-DMB-260ENST00000477537 PEG3Q9GZU2 1588 aa17.91■□□□□ 0.46
HLA-DMB-260ENST00000477537 FAM9AQ8IZU1 332 aaPredicted RBP17.89■□□□□ 0.45
HLA-DMB-260ENST00000477537 BAZ1BQ9UIG0 1483 aaKnown RBP17.83■□□□□ 0.45
HLA-DMB-260ENST00000477537 NCAPD3P42695 1498 aa17.83■□□□□ 0.44
HLA-DMB-260ENST00000477537 ABCC8Q09428 1581 aa17.79■□□□□ 0.44
HLA-DMB-260ENST00000477537 HMGXB3Q12766 1538 aa17.77■□□□□ 0.44
HLA-DMB-260ENST00000477537 PCGF6Q9BYE7 350 aa17.74■□□□□ 0.43
HLA-DMB-260ENST00000477537 EHMT2Q96KQ7 1210 aa17.7■□□□□ 0.42
HLA-DMB-260ENST00000477537 WRNQ14191 1432 aaPredicted RBP eCLIP17.56■□□□□ 0.4
HLA-DMB-260ENST00000477537 HRCP23327 699 aa17.56■□□□□ 0.4
HLA-DMB-260ENST00000477537 TRIM26Q12899 539 aaPredicted RBP17.55■□□□□ 0.4
HLA-DMB-260ENST00000477537 SOGA1O94964 1423 aa17.54■□□□□ 0.4
HLA-DMB-260ENST00000477537 SYNJ1O43426 1573 aa17.5■□□□□ 0.39
HLA-DMB-260ENST00000477537 EEA1Q15075 1411 aa17.49■□□□□ 0.39
HLA-DMB-260ENST00000477537 RUSC2Q8N2Y8 1516 aa17.47■□□□□ 0.39
HLA-DMB-260ENST00000477537 CSRNP3Q8WYN3 585 aa17.43■□□□□ 0.38
HLA-DMB-260ENST00000477537 NESP48681 1621 aa17.43■□□□□ 0.38
HLA-DMB-260ENST00000477537 CADPSQ9ULU8 1353 aa17.36■□□□□ 0.37
HLA-DMB-260ENST00000477537 TNIKQ9UKE5 1360 aa17.36■□□□□ 0.37
HLA-DMB-260ENST00000477537 CFTRP13569 1480 aa17.35■□□□□ 0.37
HLA-DMB-260ENST00000477537 TOP2BQ02880 1626 aa17.34■□□□□ 0.37
HLA-DMB-260ENST00000477537 CEP162Q5TB80 1403 aa17.33■□□□□ 0.36
HLA-DMB-260ENST00000477537 GOLGA3Q08378 1498 aa17.32■□□□□ 0.36
HLA-DMB-260ENST00000477537 BIVM-ERCC5R4GMW8 1640 aa17.31■□□□□ 0.36
HLA-DMB-260ENST00000477537 UBTFP17480 764 aaKnown RBP17.3■□□□□ 0.36
HLA-DMB-260ENST00000477537 LAMC3Q9Y6N6 1575 aa17.29■□□□□ 0.36
HLA-DMB-260ENST00000477537 KIF21BO75037 1637 aa17.27■□□□□ 0.36
HLA-DMB-260ENST00000477537 PPARGC1BQ86YN6 1023 aaKnown RBP17.27■□□□□ 0.35
HLA-DMB-260ENST00000477537 CEP164Q9UPV0 1460 aa17.26■□□□□ 0.35
HLA-DMB-260ENST00000477537 PRDM2Q13029 1718 aa17.26■□□□□ 0.35
HLA-DMB-260ENST00000477537 CUX1P39880 1505 aa17.22■□□□□ 0.35
HLA-DMB-260ENST00000477537 KIF21AQ7Z4S6 1674 aa17.21■□□□□ 0.35
HLA-DMB-260ENST00000477537 FANCD2Q9BXW9 1451 aa17.2■□□□□ 0.34
HLA-DMB-260ENST00000477537 PDS5BQ9NTI5 1447 aa17.16■□□□□ 0.34
HLA-DMB-260ENST00000477537 RAPGEF2Q9Y4G8 1499 aa17.15■□□□□ 0.34
HLA-DMB-260ENST00000477537 ERCC6Q03468 1493 aa17.12■□□□□ 0.33
HLA-DMB-260ENST00000477537 CLIP1P30622 1438 aa17.09■□□□□ 0.33
HLA-DMB-260ENST00000477537 KIF27Q86VH2 1401 aa17.07■□□□□ 0.32
HLA-DMB-260ENST00000477537 ERICH3Q5RHP9 1530 aa17.06■□□□□ 0.32
HLA-DMB-260ENST00000477537 PRXQ9BXM0 1461 aa17.06■□□□□ 0.32
HLA-DMB-260ENST00000477537 TTBK1Q5TCY1 1321 aaPredicted RBP17.06■□□□□ 0.32
HLA-DMB-260ENST00000477537 ZEB1P37275 1124 aaPredicted RBP17.06■□□□□ 0.32
HLA-DMB-260ENST00000477537 URB2Q14146 1524 aaKnown RBP17.02■□□□□ 0.32
HLA-DMB-260ENST00000477537 MRC2Q9UBG0 1479 aa16.98■□□□□ 0.31
HLA-DMB-260ENST00000477537 THOC2Q8NI27 1593 aaKnown RBP16.98■□□□□ 0.31
HLA-DMB-260ENST00000477537 VPS8Q8N3P4 1428 aa16.98■□□□□ 0.31
HLA-DMB-260ENST00000477537 RANGAP1P46060 587 aaPredicted RBP16.98■□□□□ 0.31
HLA-DMB-260ENST00000477537 TOPBP1Q92547 1522 aa16.97■□□□□ 0.31
HLA-DMB-260ENST00000477537 FGD5Q6ZNL6 1462 aa16.96■□□□□ 0.31
HLA-DMB-260ENST00000477537 DNMBPQ6XZF7 1577 aa16.95■□□□□ 0.3
HLA-DMB-260ENST00000477537 CUX2O14529 1486 aa16.95■□□□□ 0.3
HLA-DMB-260ENST00000477537 WDR62O43379 1518 aa16.92■□□□□ 0.3
HLA-DMB-260ENST00000477537 IGF1RP08069 1367 aa16.88■□□□□ 0.29
HLA-DMB-260ENST00000477537 POLA1P09884 1462 aaPredicted RBP16.87■□□□□ 0.29
HLA-DMB-260ENST00000477537 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.87■□□□□ 0.29
HLA-DMB-260ENST00000477537 APLP2Q06481 763 aa16.87■□□□□ 0.29
HLA-DMB-260ENST00000477537 ARAP1Q96P48 1450 aa16.87■□□□□ 0.29
HLA-DMB-260ENST00000477537 RAD54L2Q9Y4B4 1467 aa16.85■□□□□ 0.29
HLA-DMB-260ENST00000477537 CCER1Q8TC90 406 aaPredicted RBP16.83■□□□□ 0.28
HLA-DMB-260ENST00000477537 CARMIL1Q5VZK9 1371 aa16.82■□□□□ 0.28
HLA-DMB-260ENST00000477537 ABCA10Q8WWZ4 1543 aa16.78■□□□□ 0.28
HLA-DMB-260ENST00000477537 ARHGAP35Q9NRY4 1499 aa16.77■□□□□ 0.28
HLA-DMB-260ENST00000477537 TARBP1Q13395 1621 aaKnown RBP16.75■□□□□ 0.27
HLA-DMB-260ENST00000477537 WDR97A6NE52 1622 aa16.72■□□□□ 0.27
HLA-DMB-260ENST00000477537 ZNF608Q9ULD9 1512 aaPredicted RBP16.71■□□□□ 0.27
HLA-DMB-260ENST00000477537 TDRD9Q8NDG6 1382 aaKnown RBP16.71■□□□□ 0.27
HLA-DMB-260ENST00000477537 IFT140Q96RY7 1462 aa16.7■□□□□ 0.26
HLA-DMB-260ENST00000477537 HNRNPUL2Q1KMD3 747 aaKnown RBP16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms