RNA–Protein interactions for RNA: ENST00000475491.1

KCNIP3-206, Transcript of potassium voltage-gated channel interacting protein 3, humanhuman

TSL 1 (best)

Gene KCNIP3, Length 3,658 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KCNIP3-206ENST00000475491 NISCHQ9Y2I1 1504 aa24.37■■□□□ 1.49
KCNIP3-206ENST00000475491 DCAF8L2P0C7V8 631 aa21.59■■□□□ 1.05
KCNIP3-206ENST00000475491 SHROOM4Q9ULL8 1493 aa21.27■□□□□ 0.99
KCNIP3-206ENST00000475491 CCDC180Q9P1Z9 1646 aa20.58■□□□□ 0.89
KCNIP3-206ENST00000475491 SUPT5HO00267 1087 aaKnown RBP20.58■□□□□ 0.89
KCNIP3-206ENST00000475491 ABCC9O60706 1549 aa20.56■□□□□ 0.88
KCNIP3-206ENST00000475491 ZCCHC6Q5VYS8 1495 aaKnown RBP20.38■□□□□ 0.85
KCNIP3-206ENST00000475491 SCRIBQ14160 1630 aa19.88■□□□□ 0.77
KCNIP3-206ENST00000475491 PABPN1Q86U42 306 aaKnown RBP eCLIP19.82■□□□□ 0.76
KCNIP3-206ENST00000475491 DCAF1Q9Y4B6 1507 aa19.56■□□□□ 0.72
KCNIP3-206ENST00000475491 EHMT2Q96KQ7 1210 aa19.42■□□□□ 0.7
KCNIP3-206ENST00000475491 NACADO15069 1562 aa19.4■□□□□ 0.7
KCNIP3-206ENST00000475491 CECR2Q9BXF3 1484 aa19.38■□□□□ 0.69
KCNIP3-206ENST00000475491 RB1CC1Q8TDY2 1594 aa19.34■□□□□ 0.69
KCNIP3-206ENST00000475491 CHIC1Q5VXU3 224 aa19.25■□□□□ 0.67
KCNIP3-206ENST00000475491 FAM9AQ8IZU1 332 aaPredicted RBP19.21■□□□□ 0.67
KCNIP3-206ENST00000475491 RSF1Q96T23 1441 aaPredicted RBP19.21■□□□□ 0.67
KCNIP3-206ENST00000475491 MYO15BQ96JP2 1530 aa19.14■□□□□ 0.65
KCNIP3-206ENST00000475491 MROH2BQ7Z745 1585 aa19.1■□□□□ 0.65
KCNIP3-206ENST00000475491 LOC105371045A0A1W2PR82 267 aa19.03■□□□□ 0.64
KCNIP3-206ENST00000475491 TRIM41Q8WV44 630 aa18.95■□□□□ 0.62
KCNIP3-206ENST00000475491 WIZO95785 1651 aa18.94■□□□□ 0.62
KCNIP3-206ENST00000475491 UNC13AQ9UPW8 1703 aa18.92■□□□□ 0.62
KCNIP3-206ENST00000475491 BICRAQ9NZM4 1560 aa18.83■□□□□ 0.6
KCNIP3-206ENST00000475491 BAZ1AQ9NRL2 1556 aaPredicted RBP18.71■□□□□ 0.59
KCNIP3-206ENST00000475491 SMARCA4P51532 1647 aa18.64■□□□□ 0.58
KCNIP3-206ENST00000475491 RANGAP1P46060 587 aaPredicted RBP18.59■□□□□ 0.57
KCNIP3-206ENST00000475491 CCDC88BA6NC98 1476 aa18.57■□□□□ 0.56
KCNIP3-206ENST00000475491 PPARGC1BQ86YN6 1023 aaKnown RBP18.56■□□□□ 0.56
KCNIP3-206ENST00000475491 TTBK1Q5TCY1 1321 aaPredicted RBP18.53■□□□□ 0.56
KCNIP3-206ENST00000475491 DNAJC5BQ9UF47 199 aa18.53■□□□□ 0.56
KCNIP3-206ENST00000475491 PCGF6Q9BYE7 350 aa18.49■□□□□ 0.55
KCNIP3-206ENST00000475491 ABCC8Q09428 1581 aa18.48■□□□□ 0.55
KCNIP3-206ENST00000475491 BAZ1BQ9UIG0 1483 aaKnown RBP18.47■□□□□ 0.55
KCNIP3-206ENST00000475491 ATAD2BQ9ULI0 1458 aa18.46■□□□□ 0.55
KCNIP3-206ENST00000475491 TOP2AP11388 1531 aaKnown RBP18.4■□□□□ 0.54
KCNIP3-206ENST00000475491 EIF4G1Q04637 1599 aaKnown RBP18.36■□□□□ 0.53
KCNIP3-206ENST00000475491 SMARCA2P51531 1590 aa18.35■□□□□ 0.53
KCNIP3-206ENST00000475491 UBTFP17480 764 aaKnown RBP18.3■□□□□ 0.52
KCNIP3-206ENST00000475491 SOGA1O94964 1423 aa18.23■□□□□ 0.51
KCNIP3-206ENST00000475491 RUSC2Q8N2Y8 1516 aa18.2■□□□□ 0.5
KCNIP3-206ENST00000475491 CC2D2AQ9P2K1 1620 aa18.13■□□□□ 0.49
KCNIP3-206ENST00000475491 WRNQ14191 1432 aaPredicted RBP eCLIP18.13■□□□□ 0.49
KCNIP3-206ENST00000475491 PELP1Q8IZL8 1130 aaKnown RBP18.12■□□□□ 0.49
KCNIP3-206ENST00000475491 CSRNP3Q8WYN3 585 aa18.09■□□□□ 0.49
KCNIP3-206ENST00000475491 NCAPD3P42695 1498 aa18.07■□□□□ 0.48
KCNIP3-206ENST00000475491 NESP48681 1621 aa18.05■□□□□ 0.48
KCNIP3-206ENST00000475491 PEG3Q9GZU2 1588 aa18.01■□□□□ 0.47
KCNIP3-206ENST00000475491 SYNJ1O43426 1573 aa17.95■□□□□ 0.46
KCNIP3-206ENST00000475491 CADPSQ9ULU8 1353 aa17.9■□□□□ 0.46
KCNIP3-206ENST00000475491 P3H3Q8IVL6 736 aa17.86■□□□□ 0.45
KCNIP3-206ENST00000475491 ATP1B4Q9UN42 357 aaPredicted RBP17.85■□□□□ 0.45
KCNIP3-206ENST00000475491 HMGXB3Q12766 1538 aa17.85■□□□□ 0.45
KCNIP3-206ENST00000475491 HRCP23327 699 aa17.85■□□□□ 0.45
KCNIP3-206ENST00000475491 TRIM26Q12899 539 aaPredicted RBP17.81■□□□□ 0.44
KCNIP3-206ENST00000475491 CFTRP13569 1480 aa17.8■□□□□ 0.44
KCNIP3-206ENST00000475491 CUX1P39880 1505 aa17.76■□□□□ 0.43
KCNIP3-206ENST00000475491 FANCD2Q9BXW9 1451 aa17.75■□□□□ 0.43
KCNIP3-206ENST00000475491 RAD54L2Q9Y4B4 1467 aa17.73■□□□□ 0.43
KCNIP3-206ENST00000475491 CEP162Q5TB80 1403 aa17.73■□□□□ 0.43
KCNIP3-206ENST00000475491 RAPGEF2Q9Y4G8 1499 aa17.73■□□□□ 0.43
KCNIP3-206ENST00000475491 TDRD9Q8NDG6 1382 aaKnown RBP17.71■□□□□ 0.43
KCNIP3-206ENST00000475491 CUX2O14529 1486 aa17.71■□□□□ 0.43
KCNIP3-206ENST00000475491 MYT1Q01538 1121 aa17.68■□□□□ 0.42
KCNIP3-206ENST00000475491 ARID3CA6NKF2 412 aa17.66■□□□□ 0.42
KCNIP3-206ENST00000475491 FBLN2P98095 1184 aa17.65■□□□□ 0.42
KCNIP3-206ENST00000475491 APLP2Q06481 763 aa17.65■□□□□ 0.42
KCNIP3-206ENST00000475491 FGD5Q6ZNL6 1462 aa17.64■□□□□ 0.41
KCNIP3-206ENST00000475491 HNRNPUL2Q1KMD3 747 aaKnown RBP17.61■□□□□ 0.41
KCNIP3-206ENST00000475491 GOLGA3Q08378 1498 aa17.61■□□□□ 0.41
KCNIP3-206ENST00000475491 KIF27Q86VH2 1401 aa17.6■□□□□ 0.41
KCNIP3-206ENST00000475491 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.6■□□□□ 0.41
KCNIP3-206ENST00000475491 TOP2BQ02880 1626 aa17.59■□□□□ 0.41
KCNIP3-206ENST00000475491 TNIKQ9UKE5 1360 aa17.58■□□□□ 0.41
KCNIP3-206ENST00000475491 ITGAEP38570 1179 aa17.58■□□□□ 0.4
KCNIP3-206ENST00000475491 CLIP1P30622 1438 aa17.57■□□□□ 0.4
KCNIP3-206ENST00000475491 CEP164Q9UPV0 1460 aa17.55■□□□□ 0.4
KCNIP3-206ENST00000475491 EEA1Q15075 1411 aa17.53■□□□□ 0.4
KCNIP3-206ENST00000475491 IGF1RP08069 1367 aa17.52■□□□□ 0.39
KCNIP3-206ENST00000475491 ERCC6Q03468 1493 aa17.52■□□□□ 0.39
KCNIP3-206ENST00000475491 PDS5BQ9NTI5 1447 aa17.51■□□□□ 0.39
KCNIP3-206ENST00000475491 CARMIL1Q5VZK9 1371 aa17.51■□□□□ 0.39
KCNIP3-206ENST00000475491 TOPBP1Q92547 1522 aa17.49■□□□□ 0.39
KCNIP3-206ENST00000475491 URB2Q14146 1524 aaKnown RBP17.48■□□□□ 0.39
KCNIP3-206ENST00000475491 POLA1P09884 1462 aaPredicted RBP17.48■□□□□ 0.39
KCNIP3-206ENST00000475491 AQRO60306 1485 aaKnown RBP eCLIP17.45■□□□□ 0.38
KCNIP3-206ENST00000475491 KANK4Q5T7N3 995 aaPredicted RBP17.44■□□□□ 0.38
KCNIP3-206ENST00000475491 CCER1Q8TC90 406 aaPredicted RBP17.43■□□□□ 0.38
KCNIP3-206ENST00000475491 BIVM-ERCC5R4GMW8 1640 aa17.4■□□□□ 0.38
KCNIP3-206ENST00000475491 KIF21AQ7Z4S6 1674 aa17.37■□□□□ 0.37
KCNIP3-206ENST00000475491 PRXQ9BXM0 1461 aa17.35■□□□□ 0.37
KCNIP3-206ENST00000475491 LAMC3Q9Y6N6 1575 aa17.32■□□□□ 0.36
KCNIP3-206ENST00000475491 ZNF608Q9ULD9 1512 aaPredicted RBP17.31■□□□□ 0.36
KCNIP3-206ENST00000475491 DNMBPQ6XZF7 1577 aa17.31■□□□□ 0.36
KCNIP3-206ENST00000475491 CHMP7Q8WUX9 453 aaPredicted RBP17.28■□□□□ 0.36
KCNIP3-206ENST00000475491 ARAP1Q96P48 1450 aa17.28■□□□□ 0.36
KCNIP3-206ENST00000475491 FHOD3Q2V2M9 1422 aa17.27■□□□□ 0.36
KCNIP3-206ENST00000475491 GAPVD1Q14C86 1478 aa17.27■□□□□ 0.35
KCNIP3-206ENST00000475491 KIF21BO75037 1637 aa17.26■□□□□ 0.35
KCNIP3-206ENST00000475491 FAM50AQ14320 339 aaKnown RBP17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 82.9 ms