RNA–Protein interactions for RNA: ENST00000474684.1

CPSF7-210, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 3

Gene CPSF7, Length 635 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-210ENST00000474684 AEBP2Q6ZN18 517 aaPredicted RBP17.96■□□□□ 0.47
CPSF7-210ENST00000474684 CHIC1Q5VXU3 224 aa16.96■□□□□ 0.31
CPSF7-210ENST00000474684 SENP3Q9H4L4 574 aaPredicted RBP15.56■□□□□ 0.08
CPSF7-210ENST00000474684 PHF23Q9BUL5 403 aaPredicted RBP15.21■□□□□ 0.03
CPSF7-210ENST00000474684 NISCHQ9Y2I1 1504 aa15.02■□□□□ -0
CPSF7-210ENST00000474684 FOXD1Q16676 465 aa14.45□□□□□ -0.1
CPSF7-210ENST00000474684 POTEDQ86YR6 584 aa14.17□□□□□ -0.14
CPSF7-210ENST00000474684 MSH5O43196 834 aa13.84□□□□□ -0.19
CPSF7-210ENST00000474684 CCDC180Q9P1Z9 1646 aa13.56□□□□□ -0.24
CPSF7-210ENST00000474684 PIAS4Q8N2W9 510 aaPredicted RBP13.42□□□□□ -0.26
CPSF7-210ENST00000474684 ABCC9O60706 1549 aa13.39□□□□□ -0.27
CPSF7-210ENST00000474684 PLPPR3Q6T4P5 718 aa13.2□□□□□ -0.3
CPSF7-210ENST00000474684 PPP6R1Q9UPN7 881 aa13.09□□□□□ -0.31
CPSF7-210ENST00000474684 ADRA2BP18089 450 aa13.03□□□□□ -0.32
CPSF7-210ENST00000474684 RB1CC1Q8TDY2 1594 aa12.77□□□□□ -0.36
CPSF7-210ENST00000474684 UNC13AQ9UPW8 1703 aa12.71□□□□□ -0.37
CPSF7-210ENST00000474684 NACADO15069 1562 aa12.69□□□□□ -0.38
CPSF7-210ENST00000474684 MYO15BQ96JP2 1530 aa12.52□□□□□ -0.41
CPSF7-210ENST00000474684 ZCCHC6Q5VYS8 1495 aaKnown RBP12.51□□□□□ -0.41
CPSF7-210ENST00000474684 BICRAQ9NZM4 1560 aa12.48□□□□□ -0.41
CPSF7-210ENST00000474684 DCAF8L2P0C7V8 631 aa12.47□□□□□ -0.41
CPSF7-210ENST00000474684 DNAJC5BQ9UF47 199 aa12.43□□□□□ -0.42
CPSF7-210ENST00000474684 DCAF1Q9Y4B6 1507 aa12.4□□□□□ -0.42
CPSF7-210ENST00000474684 PABPN1Q86U42 306 aaKnown RBP eCLIP12.39□□□□□ -0.43
CPSF7-210ENST00000474684 SCRIBQ14160 1630 aa12.35□□□□□ -0.43
CPSF7-210ENST00000474684 DMRT2Q9Y5R5 561 aa12.23□□□□□ -0.45
CPSF7-210ENST00000474684 SHROOM4Q9ULL8 1493 aa12.21□□□□□ -0.46
CPSF7-210ENST00000474684 CC2D2AQ9P2K1 1620 aa12.15□□□□□ -0.47
CPSF7-210ENST00000474684 SCAF1Q9H7N4 1312 aaKnown RBP12.14□□□□□ -0.47
CPSF7-210ENST00000474684 EIF4G1Q04637 1599 aaKnown RBP12.13□□□□□ -0.47
CPSF7-210ENST00000474684 CACNB1Q02641 598 aaPredicted RBP12.09□□□□□ -0.47
CPSF7-210ENST00000474684 MAPK8IP2Q13387 824 aaPredicted RBP12.07□□□□□ -0.48
CPSF7-210ENST00000474684 CECR2Q9BXF3 1484 aa12.02□□□□□ -0.49
CPSF7-210ENST00000474684 SMARCA4P51532 1647 aa11.78□□□□□ -0.52
CPSF7-210ENST00000474684 RNF39Q9H2S5 420 aa11.7□□□□□ -0.54
CPSF7-210ENST00000474684 DCAF8L1A6NGE4 600 aa11.69□□□□□ -0.54
CPSF7-210ENST00000474684 ATAD2BQ9ULI0 1458 aa11.68□□□□□ -0.54
CPSF7-210ENST00000474684 HMGXB3Q12766 1538 aa11.67□□□□□ -0.54
CPSF7-210ENST00000474684 NCAPD3P42695 1498 aa11.66□□□□□ -0.54
CPSF7-210ENST00000474684 SMARCA2P51531 1590 aa11.66□□□□□ -0.54
CPSF7-210ENST00000474684 BAZ1AQ9NRL2 1556 aaPredicted RBP11.66□□□□□ -0.54
CPSF7-210ENST00000474684 PEG3Q9GZU2 1588 aa11.63□□□□□ -0.55
CPSF7-210ENST00000474684 HOXD11P31277 338 aaPredicted RBP11.62□□□□□ -0.55
CPSF7-210ENST00000474684 MROH2BQ7Z745 1585 aa11.62□□□□□ -0.55
CPSF7-210ENST00000474684 BAZ1BQ9UIG0 1483 aaKnown RBP11.57□□□□□ -0.56
CPSF7-210ENST00000474684 C1QBPQ07021 282 aaKnown RBP11.57□□□□□ -0.56
CPSF7-210ENST00000474684 NESP48681 1621 aa11.56□□□□□ -0.56
CPSF7-210ENST00000474684 WIZO95785 1651 aa11.53□□□□□ -0.56
CPSF7-210ENST00000474684 KIF21AQ7Z4S6 1674 aa11.52□□□□□ -0.56
CPSF7-210ENST00000474684 ERCC6Q03468 1493 aa11.51□□□□□ -0.57
CPSF7-210ENST00000474684 THOC2Q8NI27 1593 aaKnown RBP11.5□□□□□ -0.57
CPSF7-210ENST00000474684 LAMC3Q9Y6N6 1575 aa11.46□□□□□ -0.57
CPSF7-210ENST00000474684 CUX2O14529 1486 aa11.46□□□□□ -0.57
CPSF7-210ENST00000474684 PPP4R3CPQ6ZMV5 832 aa11.45□□□□□ -0.58
CPSF7-210ENST00000474684 RNF216Q9NWF9 866 aaPredicted RBP11.42□□□□□ -0.58
CPSF7-210ENST00000474684 CNKSR2Q8WXI2 1034 aa11.4□□□□□ -0.58
CPSF7-210ENST00000474684 PRDM2Q13029 1718 aa11.35□□□□□ -0.59
CPSF7-210ENST00000474684 TOP2AP11388 1531 aaKnown RBP11.35□□□□□ -0.59
CPSF7-210ENST00000474684 RSF1Q96T23 1441 aaPredicted RBP11.34□□□□□ -0.59
CPSF7-210ENST00000474684 WDR62O43379 1518 aa11.29□□□□□ -0.6
CPSF7-210ENST00000474684 CADPSQ9ULU8 1353 aa11.28□□□□□ -0.6
CPSF7-210ENST00000474684 PDS5BQ9NTI5 1447 aa11.27□□□□□ -0.6
CPSF7-210ENST00000474684 MRC2Q9UBG0 1479 aa11.27□□□□□ -0.6
CPSF7-210ENST00000474684 DNAJC5Q9H3Z4 198 aa11.27□□□□□ -0.61
CPSF7-210ENST00000474684 CEP164Q9UPV0 1460 aa11.24□□□□□ -0.61
CPSF7-210ENST00000474684 CFTRP13569 1480 aa11.22□□□□□ -0.61
CPSF7-210ENST00000474684 FANCD2Q9BXW9 1451 aa11.22□□□□□ -0.61
CPSF7-210ENST00000474684 URB2Q14146 1524 aaKnown RBP11.18□□□□□ -0.62
CPSF7-210ENST00000474684 CCDC88BA6NC98 1476 aa11.15□□□□□ -0.62
CPSF7-210ENST00000474684 TOPBP1Q92547 1522 aa11.05□□□□□ -0.64
CPSF7-210ENST00000474684 POTEHQ6S545 545 aa11.05□□□□□ -0.64
CPSF7-210ENST00000474684 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.05□□□□□ -0.644e-11■□□□□ 9.4
CPSF7-210ENST00000474684 DNMBPQ6XZF7 1577 aa11.04□□□□□ -0.64
CPSF7-210ENST00000474684 EIF4G3O43432 1585 aaKnown RBP11.03□□□□□ -0.64
CPSF7-210ENST00000474684 ZNF608Q9ULD9 1512 aaPredicted RBP11.02□□□□□ -0.65
CPSF7-210ENST00000474684 TARBP1Q13395 1621 aaKnown RBP11□□□□□ -0.65
CPSF7-210ENST00000474684 CHD1O14646 1710 aa11□□□□□ -0.65
CPSF7-210ENST00000474684 NCBP3Q53F19 620 aaKnown RBP10.98□□□□□ -0.65
CPSF7-210ENST00000474684 IFT140Q96RY7 1462 aa10.98□□□□□ -0.65
CPSF7-210ENST00000474684 WDR97A6NE52 1622 aa10.95□□□□□ -0.66
CPSF7-210ENST00000474684 POLA1P09884 1462 aaPredicted RBP10.94□□□□□ -0.66
CPSF7-210ENST00000474684 ABCC8Q09428 1581 aa10.93□□□□□ -0.66
CPSF7-210ENST00000474684 RIMBP3CA6NJZ7 1639 aa10.91□□□□□ -0.66
CPSF7-210ENST00000474684 RIMBP3BA6NNM3 1639 aa10.91□□□□□ -0.66
CPSF7-210ENST00000474684 RIMBP3Q9UFD9 1639 aa10.91□□□□□ -0.66
CPSF7-210ENST00000474684 CUX1P39880 1505 aa10.91□□□□□ -0.66
CPSF7-210ENST00000474684 FGD5Q6ZNL6 1462 aa10.89□□□□□ -0.67
CPSF7-210ENST00000474684 RAD54L2Q9Y4B4 1467 aa10.89□□□□□ -0.67
CPSF7-210ENST00000474684 PBRM1Q86U86 1689 aa10.89□□□□□ -0.67
CPSF7-210ENST00000474684 AQRO60306 1485 aaKnown RBP eCLIP10.87□□□□□ -0.673e-7■■■■■ 27.7
CPSF7-210ENST00000474684 TRIM41Q8WV44 630 aa10.84□□□□□ -0.67
CPSF7-210ENST00000474684 ARHGEF11O15085 1522 aa10.84□□□□□ -0.67
CPSF7-210ENST00000474684 ABCA5Q8WWZ7 1642 aa10.82□□□□□ -0.68
CPSF7-210ENST00000474684 SNAPC4Q5SXM2 1469 aa10.81□□□□□ -0.68
CPSF7-210ENST00000474684 BIVM-ERCC5R4GMW8 1640 aa10.81□□□□□ -0.68
CPSF7-210ENST00000474684 OSCARQ8IYS5 282 aa10.81□□□□□ -0.68
CPSF7-210ENST00000474684 SUPT5HO00267 1087 aaKnown RBP10.8□□□□□ -0.68
CPSF7-210ENST00000474684 SYNJ1O43426 1573 aa10.8□□□□□ -0.68
CPSF7-210ENST00000474684 SOGA1O94964 1423 aa10.79□□□□□ -0.68
CPSF7-210ENST00000474684 TDRD9Q8NDG6 1382 aaKnown RBP10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms