RNA–Protein interactions for RNA: ENST00000471660.5

CHMP2B-203, Transcript of charged multivesicular body protein 2B, humanhuman

TSL 2 BASIC

Gene CHMP2B, Length 2,528 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP2B-203ENST00000471660 NISCHQ9Y2I1 1504 aa21.61■■□□□ 1.05
CHMP2B-203ENST00000471660 ABCC9O60706 1549 aa20.75■□□□□ 0.91
CHMP2B-203ENST00000471660 DNAJC5BQ9UF47 199 aa20.28■□□□□ 0.84
CHMP2B-203ENST00000471660 CCDC180Q9P1Z9 1646 aa20.08■□□□□ 0.8
CHMP2B-203ENST00000471660 DNAJC5Q9H3Z4 198 aa19.54■□□□□ 0.72
CHMP2B-203ENST00000471660 RB1CC1Q8TDY2 1594 aa19.51■□□□□ 0.71
CHMP2B-203ENST00000471660 NACADO15069 1562 aa19.14■□□□□ 0.65
CHMP2B-203ENST00000471660 UNC13AQ9UPW8 1703 aa19.06■□□□□ 0.64
CHMP2B-203ENST00000471660 PABPN1Q86U42 306 aaKnown RBP eCLIP18.99■□□□□ 0.63
CHMP2B-203ENST00000471660 BICRAQ9NZM4 1560 aa18.93■□□□□ 0.62
CHMP2B-203ENST00000471660 CECR2Q9BXF3 1484 aa18.88■□□□□ 0.61
CHMP2B-203ENST00000471660 CC2D2AQ9P2K1 1620 aa18.82■□□□□ 0.6
CHMP2B-203ENST00000471660 SHROOM4Q9ULL8 1493 aa18.79■□□□□ 0.6
CHMP2B-203ENST00000471660 PELP1Q8IZL8 1130 aaKnown RBP18.75■□□□□ 0.59
CHMP2B-203ENST00000471660 MYO15BQ96JP2 1530 aa18.61■□□□□ 0.57
CHMP2B-203ENST00000471660 CUX2O14529 1486 aa18.55■□□□□ 0.56
CHMP2B-203ENST00000471660 EIF4G1Q04637 1599 aaKnown RBP18.53■□□□□ 0.56
CHMP2B-203ENST00000471660 MYT1Q01538 1121 aa18.3■□□□□ 0.52
CHMP2B-203ENST00000471660 HRCP23327 699 aa18.27■□□□□ 0.52
CHMP2B-203ENST00000471660 DCAF8L2P0C7V8 631 aa18.25■□□□□ 0.51
CHMP2B-203ENST00000471660 ZCCHC6Q5VYS8 1495 aaKnown RBP18.17■□□□□ 0.5
CHMP2B-203ENST00000471660 TRIM41Q8WV44 630 aa18.07■□□□□ 0.48
CHMP2B-203ENST00000471660 ERCC6Q03468 1493 aa18.04■□□□□ 0.48
CHMP2B-203ENST00000471660 DCAF1Q9Y4B6 1507 aa18.04■□□□□ 0.48
CHMP2B-203ENST00000471660 SCRIBQ14160 1630 aa17.96■□□□□ 0.47
CHMP2B-203ENST00000471660 THOC2Q8NI27 1593 aaKnown RBP17.77■□□□□ 0.44
CHMP2B-203ENST00000471660 NCAPD3P42695 1498 aa17.6■□□□□ 0.41
CHMP2B-203ENST00000471660 PPARGC1BQ86YN6 1023 aaKnown RBP17.57■□□□□ 0.4
CHMP2B-203ENST00000471660 SCAF1Q9H7N4 1312 aaKnown RBP17.52■□□□□ 0.4
CHMP2B-203ENST00000471660 NESP48681 1621 aa17.51■□□□□ 0.39
CHMP2B-203ENST00000471660 BAZ1AQ9NRL2 1556 aaPredicted RBP17.49■□□□□ 0.39
CHMP2B-203ENST00000471660 HMGXB3Q12766 1538 aa17.47■□□□□ 0.39
CHMP2B-203ENST00000471660 TTBK1Q5TCY1 1321 aaPredicted RBP17.45■□□□□ 0.38
CHMP2B-203ENST00000471660 LAMC3Q9Y6N6 1575 aa17.44■□□□□ 0.38
CHMP2B-203ENST00000471660 SMARCA2P51531 1590 aa17.42■□□□□ 0.38
CHMP2B-203ENST00000471660 KIF21AQ7Z4S6 1674 aa17.41■□□□□ 0.38
CHMP2B-203ENST00000471660 PCGF6Q9BYE7 350 aa17.36■□□□□ 0.37
CHMP2B-203ENST00000471660 ATAD2BQ9ULI0 1458 aa17.35■□□□□ 0.37
CHMP2B-203ENST00000471660 AEBP2Q6ZN18 517 aaPredicted RBP17.35■□□□□ 0.37
CHMP2B-203ENST00000471660 RIMBP3CA6NJZ7 1639 aa17.34■□□□□ 0.37
CHMP2B-203ENST00000471660 RIMBP3BA6NNM3 1639 aa17.34■□□□□ 0.37
CHMP2B-203ENST00000471660 RIMBP3Q9UFD9 1639 aa17.34■□□□□ 0.37
CHMP2B-203ENST00000471660 WDR62O43379 1518 aa17.28■□□□□ 0.36
CHMP2B-203ENST00000471660 OSCARQ8IYS5 282 aa17.28■□□□□ 0.36
CHMP2B-203ENST00000471660 PDS5BQ9NTI5 1447 aa17.28■□□□□ 0.36
CHMP2B-203ENST00000471660 MRC2Q9UBG0 1479 aa17.25■□□□□ 0.35
CHMP2B-203ENST00000471660 ARHGEF11O15085 1522 aa17.13■□□□□ 0.33
CHMP2B-203ENST00000471660 SMARCA4P51532 1647 aa17.13■□□□□ 0.33
CHMP2B-203ENST00000471660 BAZ1BQ9UIG0 1483 aaKnown RBP17.12■□□□□ 0.33
CHMP2B-203ENST00000471660 ZEB1P37275 1124 aaPredicted RBP17.06■□□□□ 0.32
CHMP2B-203ENST00000471660 PEG3Q9GZU2 1588 aa17.05■□□□□ 0.32
CHMP2B-203ENST00000471660 TRHP20396 242 aaPredicted RBP16.99■□□□□ 0.31
CHMP2B-203ENST00000471660 ACIN1Q9UKV3 1341 aaKnown RBP16.98■□□□□ 0.31
CHMP2B-203ENST00000471660 CADPSQ9ULU8 1353 aa16.94■□□□□ 0.3
CHMP2B-203ENST00000471660 SUPT5HO00267 1087 aaKnown RBP16.93■□□□□ 0.3
CHMP2B-203ENST00000471660 CEP164Q9UPV0 1460 aa16.92■□□□□ 0.3
CHMP2B-203ENST00000471660 ARAP1Q96P48 1450 aa16.89■□□□□ 0.29
CHMP2B-203ENST00000471660 TRIM26Q12899 539 aaPredicted RBP16.86■□□□□ 0.29
CHMP2B-203ENST00000471660 CYB5RLQ6IPT4 315 aa16.83■□□□□ 0.28
CHMP2B-203ENST00000471660 CHIC1Q5VXU3 224 aa16.8■□□□□ 0.28
CHMP2B-203ENST00000471660 ILDR1Q86SU0 546 aaPredicted RBP16.8■□□□□ 0.28
CHMP2B-203ENST00000471660 NEUROD1Q13562 356 aa16.79■□□□□ 0.28
CHMP2B-203ENST00000471660 RSF1Q96T23 1441 aaPredicted RBP16.78■□□□□ 0.28
CHMP2B-203ENST00000471660 FANCD2Q9BXW9 1451 aa16.76■□□□□ 0.27
CHMP2B-203ENST00000471660 GTF3C3Q9Y5Q9 886 aa16.75■□□□□ 0.27
CHMP2B-203ENST00000471660 CENPBP07199 599 aaPredicted RBP16.73■□□□□ 0.27
CHMP2B-203ENST00000471660 BCL11AQ9H165 835 aa16.71■□□□□ 0.27
CHMP2B-203ENST00000471660 URB2Q14146 1524 aaKnown RBP16.71■□□□□ 0.26
CHMP2B-203ENST00000471660 CHD1O14646 1710 aa16.68■□□□□ 0.26
CHMP2B-203ENST00000471660 IFT140Q96RY7 1462 aa16.66■□□□□ 0.26
CHMP2B-203ENST00000471660 ZNF608Q9ULD9 1512 aaPredicted RBP16.59■□□□□ 0.25
CHMP2B-203ENST00000471660 EIF4G3O43432 1585 aaKnown RBP16.59■□□□□ 0.25
CHMP2B-203ENST00000471660 CFTRP13569 1480 aa16.57■□□□□ 0.24
CHMP2B-203ENST00000471660 MROH2BQ7Z745 1585 aa16.56■□□□□ 0.24
CHMP2B-203ENST00000471660 PRKCSHP14314 528 aaPredicted RBP16.54■□□□□ 0.24
CHMP2B-203ENST00000471660 PRDM2Q13029 1718 aa16.53■□□□□ 0.24
CHMP2B-203ENST00000471660 FAM9AQ8IZU1 332 aaPredicted RBP16.53■□□□□ 0.24
CHMP2B-203ENST00000471660 CLASP1Q7Z460 1538 aa16.5■□□□□ 0.23
CHMP2B-203ENST00000471660 TOP2AP11388 1531 aaKnown RBP16.39■□□□□ 0.21
CHMP2B-203ENST00000471660 ANP32EQ9BTT0 268 aa16.39■□□□□ 0.21
CHMP2B-203ENST00000471660 SYNJ1O43426 1573 aa16.38■□□□□ 0.21
CHMP2B-203ENST00000471660 WIZO95785 1651 aa16.37■□□□□ 0.21
CHMP2B-203ENST00000471660 ERICH6Q7L0X2 663 aa16.37■□□□□ 0.21
CHMP2B-203ENST00000471660 TOPBP1Q92547 1522 aa16.35■□□□□ 0.21
CHMP2B-203ENST00000471660 TARBP1Q13395 1621 aaKnown RBP16.34■□□□□ 0.21
CHMP2B-203ENST00000471660 ABCC8Q09428 1581 aa16.34■□□□□ 0.21
CHMP2B-203ENST00000471660 ERCC6L2Q5T890 1561 aa16.34■□□□□ 0.21
CHMP2B-203ENST00000471660 KIF13AQ9H1H9 1805 aa16.31■□□□□ 0.2
CHMP2B-203ENST00000471660 WDR97A6NE52 1622 aa16.3■□□□□ 0.2
CHMP2B-203ENST00000471660 DIEXFQ68CQ4 756 aaKnown RBP16.29■□□□□ 0.2
CHMP2B-203ENST00000471660 GAPVD1Q14C86 1478 aa16.29■□□□□ 0.2
CHMP2B-203ENST00000471660 DNMBPQ6XZF7 1577 aa16.28■□□□□ 0.2
CHMP2B-203ENST00000471660 LOC105371045A0A1W2PR82 267 aa16.27■□□□□ 0.2
CHMP2B-203ENST00000471660 AQRO60306 1485 aaKnown RBP eCLIP16.26■□□□□ 0.19
CHMP2B-203ENST00000471660 KDM4FA0A1W2PPD8 638 aa16.23■□□□□ 0.19
CHMP2B-203ENST00000471660 APLP2Q06481 763 aa16.23■□□□□ 0.19
CHMP2B-203ENST00000471660 FBLN2P98095 1184 aa16.21■□□□□ 0.19
CHMP2B-203ENST00000471660 MAGI1Q96QZ7 1491 aaPredicted RBP16.18■□□□□ 0.18
CHMP2B-203ENST00000471660 SNAPC4Q5SXM2 1469 aa16.17■□□□□ 0.18
CHMP2B-203ENST00000471660 CLSPNQ9HAW4 1339 aa16.16■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms