RNA–Protein interactions for RNA: ENST00000469687.2

CBWD3-205, Transcript of COBW domain containing 3, humanhuman

TSL 1 (best)

Gene CBWD3, Length 2,195 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBWD3-205ENST00000469687 NISCHQ9Y2I1 1504 aa31.19■■■□□ 2.58
CBWD3-205ENST00000469687 CCDC180Q9P1Z9 1646 aa26.64■■□□□ 1.86
CBWD3-205ENST00000469687 SHROOM4Q9ULL8 1493 aa26.42■■□□□ 1.82
CBWD3-205ENST00000469687 ZCCHC6Q5VYS8 1495 aaKnown RBP26.35■■□□□ 1.81
CBWD3-205ENST00000469687 DCAF8L2P0C7V8 631 aa25.85■■□□□ 1.73
CBWD3-205ENST00000469687 SUPT5HO00267 1087 aaKnown RBP25.78■■□□□ 1.72
CBWD3-205ENST00000469687 DCAF1Q9Y4B6 1507 aa25.57■■□□□ 1.68
CBWD3-205ENST00000469687 CHIC1Q5VXU3 224 aa24.97■■□□□ 1.59
CBWD3-205ENST00000469687 SCRIBQ14160 1630 aa24.94■■□□□ 1.58
CBWD3-205ENST00000469687 MYO15BQ96JP2 1530 aa24.9■■□□□ 1.58
CBWD3-205ENST00000469687 ABCC9O60706 1549 aa24.83■■□□□ 1.57
CBWD3-205ENST00000469687 NACADO15069 1562 aa24.64■■□□□ 1.54
CBWD3-205ENST00000469687 RSF1Q96T23 1441 aaPredicted RBP24.59■■□□□ 1.53
CBWD3-205ENST00000469687 CECR2Q9BXF3 1484 aa24.36■■□□□ 1.49
CBWD3-205ENST00000469687 RB1CC1Q8TDY2 1594 aa24.35■■□□□ 1.49
CBWD3-205ENST00000469687 MROH2BQ7Z745 1585 aa24.25■■□□□ 1.47
CBWD3-205ENST00000469687 LOC105371045A0A1W2PR82 267 aa24.23■■□□□ 1.47
CBWD3-205ENST00000469687 WIZO95785 1651 aa24.14■■□□□ 1.46
CBWD3-205ENST00000469687 UNC13AQ9UPW8 1703 aa24.05■■□□□ 1.44
CBWD3-205ENST00000469687 TRIM41Q8WV44 630 aa24.01■■□□□ 1.43
CBWD3-205ENST00000469687 PCGF6Q9BYE7 350 aa23.96■■□□□ 1.43
CBWD3-205ENST00000469687 BAZ1AQ9NRL2 1556 aaPredicted RBP23.96■■□□□ 1.43
CBWD3-205ENST00000469687 FAM9AQ8IZU1 332 aaPredicted RBP23.82■■□□□ 1.4
CBWD3-205ENST00000469687 SMARCA4P51532 1647 aa23.82■■□□□ 1.4
CBWD3-205ENST00000469687 HRCP23327 699 aa23.8■■□□□ 1.4
CBWD3-205ENST00000469687 EIF4G1Q04637 1599 aaKnown RBP23.74■■□□□ 1.39
CBWD3-205ENST00000469687 TOP2AP11388 1531 aaKnown RBP23.72■■□□□ 1.39
CBWD3-205ENST00000469687 BICRAQ9NZM4 1560 aa23.69■■□□□ 1.38
CBWD3-205ENST00000469687 PABPN1Q86U42 306 aaKnown RBP eCLIP23.68■■□□□ 1.38
CBWD3-205ENST00000469687 EHMT2Q96KQ7 1210 aa23.65■■□□□ 1.38
CBWD3-205ENST00000469687 CCDC88BA6NC98 1476 aa23.61■■□□□ 1.37
CBWD3-205ENST00000469687 SMARCA2P51531 1590 aa23.6■■□□□ 1.37
CBWD3-205ENST00000469687 TRIM26Q12899 539 aaPredicted RBP23.53■■□□□ 1.36
CBWD3-205ENST00000469687 ABCC8Q09428 1581 aa23.52■■□□□ 1.36
CBWD3-205ENST00000469687 PPARGC1BQ86YN6 1023 aaKnown RBP23.4■■□□□ 1.34
CBWD3-205ENST00000469687 PEG3Q9GZU2 1588 aa23.36■■□□□ 1.33
CBWD3-205ENST00000469687 ATAD2BQ9ULI0 1458 aa23.23■■□□□ 1.31
CBWD3-205ENST00000469687 SOGA1O94964 1423 aa23.22■■□□□ 1.31
CBWD3-205ENST00000469687 BAZ1BQ9UIG0 1483 aaKnown RBP23.15■■□□□ 1.3
CBWD3-205ENST00000469687 RUSC2Q8N2Y8 1516 aa23.14■■□□□ 1.29
CBWD3-205ENST00000469687 WRNQ14191 1432 aaPredicted RBP eCLIP23.09■■□□□ 1.29
CBWD3-205ENST00000469687 SYNJ1O43426 1573 aa23.04■■□□□ 1.28
CBWD3-205ENST00000469687 CSRNP3Q8WYN3 585 aa23.01■■□□□ 1.27
CBWD3-205ENST00000469687 EEA1Q15075 1411 aa23■■□□□ 1.27
CBWD3-205ENST00000469687 CEP162Q5TB80 1403 aa22.99■■□□□ 1.27
CBWD3-205ENST00000469687 TNIKQ9UKE5 1360 aa22.94■■□□□ 1.26
CBWD3-205ENST00000469687 UBTFP17480 764 aaKnown RBP22.89■■□□□ 1.26
CBWD3-205ENST00000469687 GOLGA3Q08378 1498 aa22.87■■□□□ 1.25
CBWD3-205ENST00000469687 ZEB1P37275 1124 aaPredicted RBP22.86■■□□□ 1.25
CBWD3-205ENST00000469687 TTBK1Q5TCY1 1321 aaPredicted RBP22.83■■□□□ 1.25
CBWD3-205ENST00000469687 NCAPD3P42695 1498 aa22.8■■□□□ 1.24
CBWD3-205ENST00000469687 HMGXB3Q12766 1538 aa22.79■■□□□ 1.24
CBWD3-205ENST00000469687 KIF21BO75037 1637 aa22.77■■□□□ 1.24
CBWD3-205ENST00000469687 CEP164Q9UPV0 1460 aa22.76■■□□□ 1.23
CBWD3-205ENST00000469687 TOP2BQ02880 1626 aa22.75■■□□□ 1.23
CBWD3-205ENST00000469687 BIVM-ERCC5R4GMW8 1640 aa22.7■■□□□ 1.22
CBWD3-205ENST00000469687 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.69■■□□□ 1.22
CBWD3-205ENST00000469687 RAPGEF2Q9Y4G8 1499 aa22.67■■□□□ 1.22
CBWD3-205ENST00000469687 CLIP1P30622 1438 aa22.6■■□□□ 1.21
CBWD3-205ENST00000469687 CUX1P39880 1505 aa22.59■■□□□ 1.21
CBWD3-205ENST00000469687 CFTRP13569 1480 aa22.57■■□□□ 1.2
CBWD3-205ENST00000469687 CCER1Q8TC90 406 aaPredicted RBP22.56■■□□□ 1.2
CBWD3-205ENST00000469687 RANGAP1P46060 587 aaPredicted RBP22.52■■□□□ 1.2
CBWD3-205ENST00000469687 VPS8Q8N3P4 1428 aa22.47■■□□□ 1.19
CBWD3-205ENST00000469687 PRDM2Q13029 1718 aa22.46■■□□□ 1.19
CBWD3-205ENST00000469687 PRXQ9BXM0 1461 aa22.45■■□□□ 1.18
CBWD3-205ENST00000469687 ERICH3Q5RHP9 1530 aa22.42■■□□□ 1.18
CBWD3-205ENST00000469687 CC2D2AQ9P2K1 1620 aa22.39■■□□□ 1.17
CBWD3-205ENST00000469687 KIF27Q86VH2 1401 aa22.38■■□□□ 1.17
CBWD3-205ENST00000469687 CADPSQ9ULU8 1353 aa22.34■■□□□ 1.17
CBWD3-205ENST00000469687 ARAP1Q96P48 1450 aa22.3■■□□□ 1.16
CBWD3-205ENST00000469687 APLP2Q06481 763 aa22.29■■□□□ 1.16
CBWD3-205ENST00000469687 HNRNPUL2Q1KMD3 747 aaKnown RBP22.28■■□□□ 1.16
CBWD3-205ENST00000469687 CUX2O14529 1486 aa22.23■■□□□ 1.15
CBWD3-205ENST00000469687 FGD5Q6ZNL6 1462 aa22.21■■□□□ 1.15
CBWD3-205ENST00000469687 IGF1RP08069 1367 aa22.17■■□□□ 1.14
CBWD3-205ENST00000469687 ARHGAP35Q9NRY4 1499 aa22.14■■□□□ 1.14
CBWD3-205ENST00000469687 FANCD2Q9BXW9 1451 aa22.14■■□□□ 1.13
CBWD3-205ENST00000469687 KANK4Q5T7N3 995 aaPredicted RBP22.13■■□□□ 1.13
CBWD3-205ENST00000469687 NESP48681 1621 aa22.1■■□□□ 1.13
CBWD3-205ENST00000469687 CARMIL1Q5VZK9 1371 aa22.06■■□□□ 1.12
CBWD3-205ENST00000469687 RAD54L2Q9Y4B4 1467 aa22.02■■□□□ 1.12
CBWD3-205ENST00000469687 DNMBPQ6XZF7 1577 aa22.01■■□□□ 1.11
CBWD3-205ENST00000469687 DIEXFQ68CQ4 756 aaKnown RBP21.99■■□□□ 1.11
CBWD3-205ENST00000469687 TOPBP1Q92547 1522 aa21.99■■□□□ 1.11
CBWD3-205ENST00000469687 POLA1P09884 1462 aaPredicted RBP21.98■■□□□ 1.11
CBWD3-205ENST00000469687 RRBP1Q9P2E9 1410 aaKnown RBP21.93■■□□□ 1.1
CBWD3-205ENST00000469687 ABCA10Q8WWZ4 1543 aa21.93■■□□□ 1.1
CBWD3-205ENST00000469687 DNAJC5BQ9UF47 199 aa21.9■■□□□ 1.1
CBWD3-205ENST00000469687 ZNF316A6NFI3 1004 aaPredicted RBP21.89■■□□□ 1.09
CBWD3-205ENST00000469687 LAMC3Q9Y6N6 1575 aa21.87■■□□□ 1.09
CBWD3-205ENST00000469687 URB2Q14146 1524 aaKnown RBP21.86■■□□□ 1.09
CBWD3-205ENST00000469687 TIAM1Q13009 1591 aa21.86■■□□□ 1.09
CBWD3-205ENST00000469687 P3H3Q8IVL6 736 aa21.84■■□□□ 1.09
CBWD3-205ENST00000469687 DHX57Q6P158 1386 aaKnown RBP21.84■■□□□ 1.09
CBWD3-205ENST00000469687 CCNB3Q8WWL7 1395 aa21.84■■□□□ 1.09
CBWD3-205ENST00000469687 WDR97A6NE52 1622 aa21.82■■□□□ 1.08
CBWD3-205ENST00000469687 SCAF1Q9H7N4 1312 aaKnown RBP21.81■■□□□ 1.08
CBWD3-205ENST00000469687 PCF11O94913 1555 aaKnown RBP21.8■■□□□ 1.08
CBWD3-205ENST00000469687 CUL7Q14999 1698 aa21.79■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms