RNA–Protein interactions for RNA: ENST00000469275.5

PRKD3-207, Transcript of protein kinase D3, humanhuman

TSL 2

Gene PRKD3, Length 2,642 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKD3-207ENST00000469275 NISCHQ9Y2I1 1504 aa12.76□□□□□ -0.37
PRKD3-207ENST00000469275 AEBP2Q6ZN18 517 aaPredicted RBP11.62□□□□□ -0.55
PRKD3-207ENST00000469275 CHIC1Q5VXU3 224 aa11.59□□□□□ -0.55
PRKD3-207ENST00000469275 CCDC180Q9P1Z9 1646 aa11.2□□□□□ -0.62
PRKD3-207ENST00000469275 SHROOM4Q9ULL8 1493 aa10.98□□□□□ -0.65
PRKD3-207ENST00000469275 DCAF8L2P0C7V8 631 aa10.89□□□□□ -0.67
PRKD3-207ENST00000469275 ZCCHC6Q5VYS8 1495 aaKnown RBP10.74□□□□□ -0.69
PRKD3-207ENST00000469275 SUPT5HO00267 1087 aaKnown RBP10.67□□□□□ -0.7
PRKD3-207ENST00000469275 DCAF1Q9Y4B6 1507 aa10.53□□□□□ -0.72
PRKD3-207ENST00000469275 MYO15BQ96JP2 1530 aa10.52□□□□□ -0.73
PRKD3-207ENST00000469275 ABCC9O60706 1549 aa10.41□□□□□ -0.74
PRKD3-207ENST00000469275 NACADO15069 1562 aa10.38□□□□□ -0.75
PRKD3-207ENST00000469275 PHF23Q9BUL5 403 aaPredicted RBP10.35□□□□□ -0.75
PRKD3-207ENST00000469275 SCRIBQ14160 1630 aa10.3□□□□□ -0.76
PRKD3-207ENST00000469275 RB1CC1Q8TDY2 1594 aa10.3□□□□□ -0.76
PRKD3-207ENST00000469275 RSF1Q96T23 1441 aaPredicted RBP10.06□□□□□ -0.8
PRKD3-207ENST00000469275 CECR2Q9BXF3 1484 aa10.05□□□□□ -0.8
PRKD3-207ENST00000469275 UNC13AQ9UPW8 1703 aa10.02□□□□□ -0.81
PRKD3-207ENST00000469275 PABPN1Q86U42 306 aaKnown RBP eCLIP9.98□□□□□ -0.81
PRKD3-207ENST00000469275 MROH2BQ7Z745 1585 aa9.96□□□□□ -0.81
PRKD3-207ENST00000469275 LOC105371045A0A1W2PR82 267 aa9.96□□□□□ -0.82
PRKD3-207ENST00000469275 EHMT2Q96KQ7 1210 aa9.92□□□□□ -0.82
PRKD3-207ENST00000469275 WIZO95785 1651 aa9.91□□□□□ -0.82
PRKD3-207ENST00000469275 FAM9AQ8IZU1 332 aaPredicted RBP9.9□□□□□ -0.82
PRKD3-207ENST00000469275 BICRAQ9NZM4 1560 aa9.88□□□□□ -0.83
PRKD3-207ENST00000469275 TRIM41Q8WV44 630 aa9.87□□□□□ -0.83
PRKD3-207ENST00000469275 SENP3Q9H4L4 574 aaPredicted RBP9.81□□□□□ -0.84
PRKD3-207ENST00000469275 BAZ1AQ9NRL2 1556 aaPredicted RBP9.8□□□□□ -0.84
PRKD3-207ENST00000469275 SMARCA4P51532 1647 aa9.76□□□□□ -0.85
PRKD3-207ENST00000469275 PCGF6Q9BYE7 350 aa9.76□□□□□ -0.85
PRKD3-207ENST00000469275 CCDC88BA6NC98 1476 aa9.69□□□□□ -0.86
PRKD3-207ENST00000469275 TOP2AP11388 1531 aaKnown RBP9.68□□□□□ -0.86
PRKD3-207ENST00000469275 ABCC8Q09428 1581 aa9.67□□□□□ -0.86
PRKD3-207ENST00000469275 PEG3Q9GZU2 1588 aa9.66□□□□□ -0.86
PRKD3-207ENST00000469275 SMARCA2P51531 1590 aa9.65□□□□□ -0.86
PRKD3-207ENST00000469275 PPARGC1BQ86YN6 1023 aaKnown RBP9.61□□□□□ -0.87
PRKD3-207ENST00000469275 EIF4G1Q04637 1599 aaKnown RBP9.6□□□□□ -0.87
PRKD3-207ENST00000469275 ATAD2BQ9ULI0 1458 aa9.57□□□□□ -0.88
PRKD3-207ENST00000469275 HMGXB3Q12766 1538 aa9.56□□□□□ -0.88
PRKD3-207ENST00000469275 PLPPR3Q6T4P5 718 aa9.56□□□□□ -0.88
PRKD3-207ENST00000469275 BAZ1BQ9UIG0 1483 aaKnown RBP9.56□□□□□ -0.88
PRKD3-207ENST00000469275 SOGA1O94964 1423 aa9.53□□□□□ -0.88
PRKD3-207ENST00000469275 TTBK1Q5TCY1 1321 aaPredicted RBP9.53□□□□□ -0.88
PRKD3-207ENST00000469275 HRCP23327 699 aa9.52□□□□□ -0.89
PRKD3-207ENST00000469275 RUSC2Q8N2Y8 1516 aa9.51□□□□□ -0.89
PRKD3-207ENST00000469275 TRIM26Q12899 539 aaPredicted RBP9.51□□□□□ -0.89
PRKD3-207ENST00000469275 NCAPD3P42695 1498 aa9.5□□□□□ -0.89
PRKD3-207ENST00000469275 WRNQ14191 1432 aaPredicted RBP eCLIP9.47□□□□□ -0.89
PRKD3-207ENST00000469275 UBTFP17480 764 aaKnown RBP9.47□□□□□ -0.89
PRKD3-207ENST00000469275 CC2D2AQ9P2K1 1620 aa9.47□□□□□ -0.89
PRKD3-207ENST00000469275 RANGAP1P46060 587 aaPredicted RBP9.46□□□□□ -0.9
PRKD3-207ENST00000469275 CSRNP3Q8WYN3 585 aa9.44□□□□□ -0.9
PRKD3-207ENST00000469275 SYNJ1O43426 1573 aa9.43□□□□□ -0.9
PRKD3-207ENST00000469275 CEP162Q5TB80 1403 aa9.37□□□□□ -0.91
PRKD3-207ENST00000469275 PRDM2Q13029 1718 aa9.36□□□□□ -0.91
PRKD3-207ENST00000469275 TNIKQ9UKE5 1360 aa9.31□□□□□ -0.92
PRKD3-207ENST00000469275 EEA1Q15075 1411 aa9.31□□□□□ -0.92
PRKD3-207ENST00000469275 GOLGA3Q08378 1498 aa9.31□□□□□ -0.92
PRKD3-207ENST00000469275 RAPGEF2Q9Y4G8 1499 aa9.29□□□□□ -0.92
PRKD3-207ENST00000469275 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.28□□□□□ -0.92
PRKD3-207ENST00000469275 TOP2BQ02880 1626 aa9.28□□□□□ -0.92
PRKD3-207ENST00000469275 CUX1P39880 1505 aa9.28□□□□□ -0.92
PRKD3-207ENST00000469275 DNAJC5BQ9UF47 199 aa9.27□□□□□ -0.93
PRKD3-207ENST00000469275 CFTRP13569 1480 aa9.27□□□□□ -0.93
PRKD3-207ENST00000469275 LAMC3Q9Y6N6 1575 aa9.27□□□□□ -0.93
PRKD3-207ENST00000469275 CEP164Q9UPV0 1460 aa9.27□□□□□ -0.93
PRKD3-207ENST00000469275 CLIP1P30622 1438 aa9.23□□□□□ -0.93
PRKD3-207ENST00000469275 CADPSQ9ULU8 1353 aa9.23□□□□□ -0.93
PRKD3-207ENST00000469275 BIVM-ERCC5R4GMW8 1640 aa9.22□□□□□ -0.93
PRKD3-207ENST00000469275 NESP48681 1621 aa9.22□□□□□ -0.93
PRKD3-207ENST00000469275 KIF21BO75037 1637 aa9.21□□□□□ -0.93
PRKD3-207ENST00000469275 CCER1Q8TC90 406 aaPredicted RBP9.2□□□□□ -0.94
PRKD3-207ENST00000469275 KIF27Q86VH2 1401 aa9.18□□□□□ -0.94
PRKD3-207ENST00000469275 APLP2Q06481 763 aa9.18□□□□□ -0.94
PRKD3-207ENST00000469275 HNRNPUL2Q1KMD3 747 aaKnown RBP9.18□□□□□ -0.94
PRKD3-207ENST00000469275 CUX2O14529 1486 aa9.17□□□□□ -0.94
PRKD3-207ENST00000469275 FGD5Q6ZNL6 1462 aa9.16□□□□□ -0.94
PRKD3-207ENST00000469275 FANCD2Q9BXW9 1451 aa9.16□□□□□ -0.94
PRKD3-207ENST00000469275 ADRA2BP18089 450 aa9.15□□□□□ -0.94
PRKD3-207ENST00000469275 ZEB1P37275 1124 aaPredicted RBP9.15□□□□□ -0.95
PRKD3-207ENST00000469275 PRXQ9BXM0 1461 aa9.14□□□□□ -0.95
PRKD3-207ENST00000469275 VPS8Q8N3P4 1428 aa9.14□□□□□ -0.95
PRKD3-207ENST00000469275 RAD54L2Q9Y4B4 1467 aa9.13□□□□□ -0.95
PRKD3-207ENST00000469275 P3H3Q8IVL6 736 aa9.12□□□□□ -0.95
PRKD3-207ENST00000469275 PDS5BQ9NTI5 1447 aa9.12□□□□□ -0.95
PRKD3-207ENST00000469275 IGF1RP08069 1367 aa9.11□□□□□ -0.95
PRKD3-207ENST00000469275 KANK4Q5T7N3 995 aaPredicted RBP9.1□□□□□ -0.95
PRKD3-207ENST00000469275 ATP1B4Q9UN42 357 aaPredicted RBP9.09□□□□□ -0.95
PRKD3-207ENST00000469275 ARAP1Q96P48 1450 aa9.09□□□□□ -0.95
PRKD3-207ENST00000469275 ERICH3Q5RHP9 1530 aa9.09□□□□□ -0.95
PRKD3-207ENST00000469275 CARMIL1Q5VZK9 1371 aa9.08□□□□□ -0.96
PRKD3-207ENST00000469275 WDR97A6NE52 1622 aa9.07□□□□□ -0.96
PRKD3-207ENST00000469275 TOPBP1Q92547 1522 aa9.06□□□□□ -0.96
PRKD3-207ENST00000469275 POLA1P09884 1462 aaPredicted RBP9.06□□□□□ -0.96
PRKD3-207ENST00000469275 ITGAEP38570 1179 aa9.05□□□□□ -0.96
PRKD3-207ENST00000469275 PPP6R1Q9UPN7 881 aa9.05□□□□□ -0.96
PRKD3-207ENST00000469275 TDRD9Q8NDG6 1382 aaKnown RBP9.05□□□□□ -0.96
PRKD3-207ENST00000469275 DNMBPQ6XZF7 1577 aa9.05□□□□□ -0.96
PRKD3-207ENST00000469275 ARHGAP35Q9NRY4 1499 aa9.04□□□□□ -0.96
PRKD3-207ENST00000469275 KIF21AQ7Z4S6 1674 aa9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 104.3 ms