RNA–Protein interactions for RNA: ENST00000469154.5

SMARCD3-205, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 5

Gene SMARCD3, Length 2,415 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-205ENST00000469154 NISCHQ9Y2I1 1504 aa30.46■■■□□ 2.47
SMARCD3-205ENST00000469154 CCDC180Q9P1Z9 1646 aa26.63■■□□□ 1.85
SMARCD3-205ENST00000469154 ABCC9O60706 1549 aa25.58■■□□□ 1.69
SMARCD3-205ENST00000469154 ZCCHC6Q5VYS8 1495 aaKnown RBP25.51■■□□□ 1.68
SMARCD3-205ENST00000469154 DCAF8L2P0C7V8 631 aa25.4■■□□□ 1.66
SMARCD3-205ENST00000469154 DCAF1Q9Y4B6 1507 aa25.13■■□□□ 1.61
SMARCD3-205ENST00000469154 MYO15BQ96JP2 1530 aa24.94■■□□□ 1.58
SMARCD3-205ENST00000469154 NACADO15069 1562 aa24.91■■□□□ 1.58
SMARCD3-205ENST00000469154 RB1CC1Q8TDY2 1594 aa24.78■■□□□ 1.56
SMARCD3-205ENST00000469154 SHROOM4Q9ULL8 1493 aa24.77■■□□□ 1.56
SMARCD3-205ENST00000469154 SCRIBQ14160 1630 aa24.53■■□□□ 1.52
SMARCD3-205ENST00000469154 SUPT5HO00267 1087 aaKnown RBP24.34■■□□□ 1.49
SMARCD3-205ENST00000469154 UNC13AQ9UPW8 1703 aa24.24■■□□□ 1.47
SMARCD3-205ENST00000469154 PABPN1Q86U42 306 aaKnown RBP eCLIP24.11■■□□□ 1.45
SMARCD3-205ENST00000469154 BICRAQ9NZM4 1560 aa24.05■■□□□ 1.44
SMARCD3-205ENST00000469154 CHIC1Q5VXU3 224 aa23.81■■□□□ 1.4
SMARCD3-205ENST00000469154 CECR2Q9BXF3 1484 aa23.73■■□□□ 1.39
SMARCD3-205ENST00000469154 MROH2BQ7Z745 1585 aa23.55■■□□□ 1.36
SMARCD3-205ENST00000469154 RSF1Q96T23 1441 aaPredicted RBP23.54■■□□□ 1.36
SMARCD3-205ENST00000469154 BAZ1AQ9NRL2 1556 aaPredicted RBP23.53■■□□□ 1.36
SMARCD3-205ENST00000469154 SMARCA4P51532 1647 aa23.46■■□□□ 1.35
SMARCD3-205ENST00000469154 EIF4G1Q04637 1599 aaKnown RBP23.36■■□□□ 1.33
SMARCD3-205ENST00000469154 WIZO95785 1651 aa23.32■■□□□ 1.32
SMARCD3-205ENST00000469154 HRCP23327 699 aa23.29■■□□□ 1.32
SMARCD3-205ENST00000469154 ATAD2BQ9ULI0 1458 aa23.18■■□□□ 1.3
SMARCD3-205ENST00000469154 PEG3Q9GZU2 1588 aa23.16■■□□□ 1.3
SMARCD3-205ENST00000469154 SMARCA2P51531 1590 aa23.14■■□□□ 1.29
SMARCD3-205ENST00000469154 CC2D2AQ9P2K1 1620 aa23.09■■□□□ 1.29
SMARCD3-205ENST00000469154 PCGF6Q9BYE7 350 aa23.09■■□□□ 1.29
SMARCD3-205ENST00000469154 TOP2AP11388 1531 aaKnown RBP23.05■■□□□ 1.28
SMARCD3-205ENST00000469154 BAZ1BQ9UIG0 1483 aaKnown RBP23.04■■□□□ 1.28
SMARCD3-205ENST00000469154 NCAPD3P42695 1498 aa23.02■■□□□ 1.28
SMARCD3-205ENST00000469154 LOC105371045A0A1W2PR82 267 aa22.99■■□□□ 1.27
SMARCD3-205ENST00000469154 HMGXB3Q12766 1538 aa22.93■■□□□ 1.26
SMARCD3-205ENST00000469154 DNAJC5BQ9UF47 199 aa22.87■■□□□ 1.25
SMARCD3-205ENST00000469154 CCDC88BA6NC98 1476 aa22.85■■□□□ 1.25
SMARCD3-205ENST00000469154 TRIM26Q12899 539 aaPredicted RBP22.76■■□□□ 1.23
SMARCD3-205ENST00000469154 TRIM41Q8WV44 630 aa22.74■■□□□ 1.23
SMARCD3-205ENST00000469154 PPARGC1BQ86YN6 1023 aaKnown RBP22.62■■□□□ 1.21
SMARCD3-205ENST00000469154 FAM9AQ8IZU1 332 aaPredicted RBP22.45■■□□□ 1.18
SMARCD3-205ENST00000469154 CADPSQ9ULU8 1353 aa22.44■■□□□ 1.18
SMARCD3-205ENST00000469154 CFTRP13569 1480 aa22.43■■□□□ 1.18
SMARCD3-205ENST00000469154 ZEB1P37275 1124 aaPredicted RBP22.4■■□□□ 1.18
SMARCD3-205ENST00000469154 NESP48681 1621 aa22.36■■□□□ 1.17
SMARCD3-205ENST00000469154 ABCC8Q09428 1581 aa22.29■■□□□ 1.16
SMARCD3-205ENST00000469154 LAMC3Q9Y6N6 1575 aa22.27■■□□□ 1.16
SMARCD3-205ENST00000469154 PRDM2Q13029 1718 aa22.21■■□□□ 1.15
SMARCD3-205ENST00000469154 FANCD2Q9BXW9 1451 aa22.19■■□□□ 1.14
SMARCD3-205ENST00000469154 WRNQ14191 1432 aaPredicted RBP eCLIP22.17■■□□□ 1.14
SMARCD3-205ENST00000469154 EHMT2Q96KQ7 1210 aa22.16■■□□□ 1.14
SMARCD3-205ENST00000469154 PDS5BQ9NTI5 1447 aa22.15■■□□□ 1.14
SMARCD3-205ENST00000469154 CEP164Q9UPV0 1460 aa22.07■■□□□ 1.12
SMARCD3-205ENST00000469154 SYNJ1O43426 1573 aa22.07■■□□□ 1.12
SMARCD3-205ENST00000469154 KIF21AQ7Z4S6 1674 aa22.03■■□□□ 1.12
SMARCD3-205ENST00000469154 CUX1P39880 1505 aa22.03■■□□□ 1.12
SMARCD3-205ENST00000469154 TOP2BQ02880 1626 aa21.98■■□□□ 1.11
SMARCD3-205ENST00000469154 EEA1Q15075 1411 aa21.96■■□□□ 1.11
SMARCD3-205ENST00000469154 ERCC6Q03468 1493 aa21.96■■□□□ 1.11
SMARCD3-205ENST00000469154 BIVM-ERCC5R4GMW8 1640 aa21.94■■□□□ 1.1
SMARCD3-205ENST00000469154 URB2Q14146 1524 aaKnown RBP21.92■■□□□ 1.1
SMARCD3-205ENST00000469154 TOPBP1Q92547 1522 aa21.9■■□□□ 1.1
SMARCD3-205ENST00000469154 DNMBPQ6XZF7 1577 aa21.89■■□□□ 1.1
SMARCD3-205ENST00000469154 CEP162Q5TB80 1403 aa21.88■■□□□ 1.09
SMARCD3-205ENST00000469154 TNIKQ9UKE5 1360 aa21.88■■□□□ 1.09
SMARCD3-205ENST00000469154 MRC2Q9UBG0 1479 aa21.87■■□□□ 1.09
SMARCD3-205ENST00000469154 SOGA1O94964 1423 aa21.86■■□□□ 1.09
SMARCD3-205ENST00000469154 FGD5Q6ZNL6 1462 aa21.84■■□□□ 1.09
SMARCD3-205ENST00000469154 POLA1P09884 1462 aaPredicted RBP21.78■■□□□ 1.08
SMARCD3-205ENST00000469154 GOLGA3Q08378 1498 aa21.77■■□□□ 1.08
SMARCD3-205ENST00000469154 CSRNP3Q8WYN3 585 aa21.77■■□□□ 1.08
SMARCD3-205ENST00000469154 RUSC2Q8N2Y8 1516 aa21.75■■□□□ 1.07
SMARCD3-205ENST00000469154 WDR62O43379 1518 aa21.74■■□□□ 1.07
SMARCD3-205ENST00000469154 THOC2Q8NI27 1593 aaKnown RBP21.74■■□□□ 1.07
SMARCD3-205ENST00000469154 RAD54L2Q9Y4B4 1467 aa21.73■■□□□ 1.07
SMARCD3-205ENST00000469154 CCER1Q8TC90 406 aaPredicted RBP21.72■■□□□ 1.07
SMARCD3-205ENST00000469154 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.71■■□□□ 1.07
SMARCD3-205ENST00000469154 KIF21BO75037 1637 aa21.69■■□□□ 1.06
SMARCD3-205ENST00000469154 CUX2O14529 1486 aa21.66■■□□□ 1.06
SMARCD3-205ENST00000469154 KIF27Q86VH2 1401 aa21.64■■□□□ 1.05
SMARCD3-205ENST00000469154 UBTFP17480 764 aaKnown RBP21.63■■□□□ 1.05
SMARCD3-205ENST00000469154 ABCA10Q8WWZ4 1543 aa21.62■■□□□ 1.05
SMARCD3-205ENST00000469154 TDRD9Q8NDG6 1382 aaKnown RBP21.57■■□□□ 1.04
SMARCD3-205ENST00000469154 TARBP1Q13395 1621 aaKnown RBP21.57■■□□□ 1.04
SMARCD3-205ENST00000469154 IFT140Q96RY7 1462 aa21.54■■□□□ 1.04
SMARCD3-205ENST00000469154 WDR97A6NE52 1622 aa21.53■■□□□ 1.04
SMARCD3-205ENST00000469154 TTBK1Q5TCY1 1321 aaPredicted RBP21.51■■□□□ 1.03
SMARCD3-205ENST00000469154 IGF1RP08069 1367 aa21.49■■□□□ 1.03
SMARCD3-205ENST00000469154 ZNF608Q9ULD9 1512 aaPredicted RBP21.48■■□□□ 1.03
SMARCD3-205ENST00000469154 AQRO60306 1485 aaKnown RBP eCLIP21.47■■□□□ 1.03
SMARCD3-205ENST00000469154 GAPVD1Q14C86 1478 aa21.47■■□□□ 1.03
SMARCD3-205ENST00000469154 CLIP1P30622 1438 aa21.46■■□□□ 1.03
SMARCD3-205ENST00000469154 SCAF1Q9H7N4 1312 aaKnown RBP21.45■■□□□ 1.02
SMARCD3-205ENST00000469154 ABCA5Q8WWZ7 1642 aa21.44■■□□□ 1.02
SMARCD3-205ENST00000469154 VPS8Q8N3P4 1428 aa21.42■■□□□ 1.02
SMARCD3-205ENST00000469154 PRXQ9BXM0 1461 aa21.4■■□□□ 1.02
SMARCD3-205ENST00000469154 RAPGEF2Q9Y4G8 1499 aa21.38■■□□□ 1.01
SMARCD3-205ENST00000469154 CARMIL1Q5VZK9 1371 aa21.38■■□□□ 1.01
SMARCD3-205ENST00000469154 DIEXFQ68CQ4 756 aaKnown RBP21.37■■□□□ 1.01
SMARCD3-205ENST00000469154 EIF4G3O43432 1585 aaKnown RBP21.36■■□□□ 1.01
SMARCD3-205ENST00000469154 ERICH3Q5RHP9 1530 aa21.35■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms