RNA–Protein interactions for RNA: ENST00000466351.1

CDHR3-204, Transcript of cadherin related family member 3, humanhuman

TSL 3

Gene CDHR3, Length 362 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDHR3-204ENST00000466351 AEBP2Q6ZN18 517 aaPredicted RBP14.97□□□□□ -0.01
CDHR3-204ENST00000466351 NISCHQ9Y2I1 1504 aa14.73□□□□□ -0.05
CDHR3-204ENST00000466351 CHIC1Q5VXU3 224 aa14.37□□□□□ -0.11
CDHR3-204ENST00000466351 CCDC180Q9P1Z9 1646 aa12.87□□□□□ -0.35
CDHR3-204ENST00000466351 SENP3Q9H4L4 574 aaPredicted RBP12.68□□□□□ -0.38
CDHR3-204ENST00000466351 PHF23Q9BUL5 403 aaPredicted RBP12.65□□□□□ -0.38
CDHR3-204ENST00000466351 ZCCHC6Q5VYS8 1495 aaKnown RBP12.51□□□□□ -0.41
CDHR3-204ENST00000466351 DCAF1Q9Y4B6 1507 aa12.37□□□□□ -0.43
CDHR3-204ENST00000466351 MYO15BQ96JP2 1530 aa12.11□□□□□ -0.47
CDHR3-204ENST00000466351 SHROOM4Q9ULL8 1493 aa11.94□□□□□ -0.5
CDHR3-204ENST00000466351 FOXD1Q16676 465 aa11.85□□□□□ -0.51
CDHR3-204ENST00000466351 ABCC9O60706 1549 aa11.82□□□□□ -0.52
CDHR3-204ENST00000466351 NACADO15069 1562 aa11.79□□□□□ -0.52
CDHR3-204ENST00000466351 SUPT5HO00267 1087 aaKnown RBP11.68□□□□□ -0.54
CDHR3-204ENST00000466351 SCRIBQ14160 1630 aa11.6□□□□□ -0.55
CDHR3-204ENST00000466351 DCAF8L2P0C7V8 631 aa11.6□□□□□ -0.55
CDHR3-204ENST00000466351 RB1CC1Q8TDY2 1594 aa11.57□□□□□ -0.56
CDHR3-204ENST00000466351 PLPPR3Q6T4P5 718 aa11.55□□□□□ -0.56
CDHR3-204ENST00000466351 RSF1Q96T23 1441 aaPredicted RBP11.51□□□□□ -0.57
CDHR3-204ENST00000466351 BAZ1AQ9NRL2 1556 aaPredicted RBP11.41□□□□□ -0.58
CDHR3-204ENST00000466351 UNC13AQ9UPW8 1703 aa11.37□□□□□ -0.59
CDHR3-204ENST00000466351 MROH2BQ7Z745 1585 aa11.31□□□□□ -0.6
CDHR3-204ENST00000466351 EIF4G1Q04637 1599 aaKnown RBP11.28□□□□□ -0.6
CDHR3-204ENST00000466351 SMARCA4P51532 1647 aa11.27□□□□□ -0.6
CDHR3-204ENST00000466351 CECR2Q9BXF3 1484 aa11.26□□□□□ -0.61
CDHR3-204ENST00000466351 TOP2AP11388 1531 aaKnown RBP11.26□□□□□ -0.61
CDHR3-204ENST00000466351 WIZO95785 1651 aa11.26□□□□□ -0.61
CDHR3-204ENST00000466351 PPP6R1Q9UPN7 881 aa11.24□□□□□ -0.61
CDHR3-204ENST00000466351 PEG3Q9GZU2 1588 aa11.24□□□□□ -0.61
CDHR3-204ENST00000466351 ADRA2BP18089 450 aa11.22□□□□□ -0.61
CDHR3-204ENST00000466351 BICRAQ9NZM4 1560 aa11.16□□□□□ -0.62
CDHR3-204ENST00000466351 SMARCA2P51531 1590 aa11.12□□□□□ -0.63
CDHR3-204ENST00000466351 PIAS4Q8N2W9 510 aaPredicted RBP11.09□□□□□ -0.63
CDHR3-204ENST00000466351 TRIM41Q8WV44 630 aa11.06□□□□□ -0.64
CDHR3-204ENST00000466351 HRCP23327 699 aa11.05□□□□□ -0.64
CDHR3-204ENST00000466351 EEA1Q15075 1411 aa11.05□□□□□ -0.64
CDHR3-204ENST00000466351 CCDC88BA6NC98 1476 aa11.02□□□□□ -0.65
CDHR3-204ENST00000466351 TRIM26Q12899 539 aaPredicted RBP10.96□□□□□ -0.65
CDHR3-204ENST00000466351 MSH5O43196 834 aa10.95□□□□□ -0.66
CDHR3-204ENST00000466351 HMGXB3Q12766 1538 aa10.94□□□□□ -0.66
CDHR3-204ENST00000466351 LOC105371045A0A1W2PR82 267 aa10.93□□□□□ -0.66
CDHR3-204ENST00000466351 ATAD2BQ9ULI0 1458 aa10.92□□□□□ -0.66
CDHR3-204ENST00000466351 WRNQ14191 1432 aaPredicted RBP eCLIP10.9□□□□□ -0.66
CDHR3-204ENST00000466351 BAZ1BQ9UIG0 1483 aaKnown RBP10.89□□□□□ -0.67
CDHR3-204ENST00000466351 PCGF6Q9BYE7 350 aa10.89□□□□□ -0.67
CDHR3-204ENST00000466351 KIF21BO75037 1637 aa10.87□□□□□ -0.67
CDHR3-204ENST00000466351 ABCC8Q09428 1581 aa10.87□□□□□ -0.67
CDHR3-204ENST00000466351 PRDM2Q13029 1718 aa10.86□□□□□ -0.67
CDHR3-204ENST00000466351 ZEB1P37275 1124 aaPredicted RBP10.85□□□□□ -0.67
CDHR3-204ENST00000466351 BIVM-ERCC5R4GMW8 1640 aa10.84□□□□□ -0.67
CDHR3-204ENST00000466351 TNIKQ9UKE5 1360 aa10.82□□□□□ -0.68
CDHR3-204ENST00000466351 NCAPD3P42695 1498 aa10.81□□□□□ -0.68
CDHR3-204ENST00000466351 TOP2BQ02880 1626 aa10.81□□□□□ -0.68
CDHR3-204ENST00000466351 GOLGA3Q08378 1498 aa10.81□□□□□ -0.68
CDHR3-204ENST00000466351 SYNJ1O43426 1573 aa10.78□□□□□ -0.68
CDHR3-204ENST00000466351 CEP164Q9UPV0 1460 aa10.78□□□□□ -0.68
CDHR3-204ENST00000466351 CEP162Q5TB80 1403 aa10.75□□□□□ -0.69
CDHR3-204ENST00000466351 ERICH3Q5RHP9 1530 aa10.74□□□□□ -0.69
CDHR3-204ENST00000466351 SOGA1O94964 1423 aa10.71□□□□□ -0.69
CDHR3-204ENST00000466351 PABPN1Q86U42 306 aaKnown RBP eCLIP10.7□□□□□ -0.7
CDHR3-204ENST00000466351 CSRNP3Q8WYN3 585 aa10.7□□□□□ -0.7
CDHR3-204ENST00000466351 FAM9AQ8IZU1 332 aaPredicted RBP10.69□□□□□ -0.7
CDHR3-204ENST00000466351 CFTRP13569 1480 aa10.68□□□□□ -0.7
CDHR3-204ENST00000466351 RUSC2Q8N2Y8 1516 aa10.61□□□□□ -0.71
CDHR3-204ENST00000466351 PRXQ9BXM0 1461 aa10.61□□□□□ -0.71
CDHR3-204ENST00000466351 VPS8Q8N3P4 1428 aa10.59□□□□□ -0.71
CDHR3-204ENST00000466351 CUX1P39880 1505 aa10.58□□□□□ -0.72
CDHR3-204ENST00000466351 CLIP1P30622 1438 aa10.58□□□□□ -0.72
CDHR3-204ENST00000466351 KIF27Q86VH2 1401 aa10.55□□□□□ -0.72
CDHR3-204ENST00000466351 RAPGEF2Q9Y4G8 1499 aa10.54□□□□□ -0.72
CDHR3-204ENST00000466351 UBTFP17480 764 aaKnown RBP10.5□□□□□ -0.73
CDHR3-204ENST00000466351 CADPSQ9ULU8 1353 aa10.5□□□□□ -0.73
CDHR3-204ENST00000466351 MAP3K1Q13233 1512 aa10.48□□□□□ -0.73
CDHR3-204ENST00000466351 CC2D2AQ9P2K1 1620 aa10.48□□□□□ -0.73
CDHR3-204ENST00000466351 PPARGC1BQ86YN6 1023 aaKnown RBP10.48□□□□□ -0.73
CDHR3-204ENST00000466351 DNMBPQ6XZF7 1577 aa10.46□□□□□ -0.74
CDHR3-204ENST00000466351 CUL7Q14999 1698 aa10.45□□□□□ -0.74
CDHR3-204ENST00000466351 LAMC3Q9Y6N6 1575 aa10.45□□□□□ -0.74
CDHR3-204ENST00000466351 ARAP1Q96P48 1450 aa10.44□□□□□ -0.74
CDHR3-204ENST00000466351 WDR97A6NE52 1622 aa10.41□□□□□ -0.74
CDHR3-204ENST00000466351 CLSPNQ9HAW4 1339 aa10.41□□□□□ -0.74
CDHR3-204ENST00000466351 POTEDQ86YR6 584 aa10.41□□□□□ -0.74
CDHR3-204ENST00000466351 ABCA10Q8WWZ4 1543 aa10.4□□□□□ -0.74
CDHR3-204ENST00000466351 EFCAB5A4FU69 1503 aa10.39□□□□□ -0.75
CDHR3-204ENST00000466351 CUX2O14529 1486 aa10.39□□□□□ -0.75
CDHR3-204ENST00000466351 FGD5Q6ZNL6 1462 aa10.39□□□□□ -0.75
CDHR3-204ENST00000466351 CFAP43Q8NDM7 1665 aa10.38□□□□□ -0.75
CDHR3-204ENST00000466351 CTTNBP2Q8WZ74 1663 aa10.38□□□□□ -0.75
CDHR3-204ENST00000466351 FANCD2Q9BXW9 1451 aa10.38□□□□□ -0.75
CDHR3-204ENST00000466351 EHMT2Q96KQ7 1210 aa10.38□□□□□ -0.75
CDHR3-204ENST00000466351 CCER1Q8TC90 406 aaPredicted RBP10.37□□□□□ -0.75
CDHR3-204ENST00000466351 RRBP1Q9P2E9 1410 aaKnown RBP10.37□□□□□ -0.75
CDHR3-204ENST00000466351 ARHGAP35Q9NRY4 1499 aa10.36□□□□□ -0.75
CDHR3-204ENST00000466351 APLP2Q06481 763 aa10.36□□□□□ -0.75
CDHR3-204ENST00000466351 KIF21AQ7Z4S6 1674 aa10.36□□□□□ -0.75
CDHR3-204ENST00000466351 FHAD1B1AJZ9 1412 aa10.34□□□□□ -0.75
CDHR3-204ENST00000466351 TOPBP1Q92547 1522 aa10.34□□□□□ -0.75
CDHR3-204ENST00000466351 AQRO60306 1485 aaKnown RBP eCLIP10.34□□□□□ -0.75
CDHR3-204ENST00000466351 TIAM1Q13009 1591 aa10.34□□□□□ -0.75
CDHR3-204ENST00000466351 IGF1RP08069 1367 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 71.2 ms