RNA–Protein interactions for RNA: ENST00000464956.1

USP40-211, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 185 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-211ENST00000464956 DNAJC5BQ9UF47 199 aa7.36□□□□□ -1.23
USP40-211ENST00000464956 DNAJC5Q9H3Z4 198 aa7.28□□□□□ -1.24
USP40-211ENST00000464956 ABCC9O60706 1549 aa7.24□□□□□ -1.25
USP40-211ENST00000464956 NISCHQ9Y2I1 1504 aa7.06□□□□□ -1.28
USP40-211ENST00000464956 TRIM41Q8WV44 630 aa6.72□□□□□ -1.33
USP40-211ENST00000464956 PABPN1Q86U42 306 aaKnown RBP eCLIP6.69□□□□□ -1.34
USP40-211ENST00000464956 CECR2Q9BXF3 1484 aa6.61□□□□□ -1.35
USP40-211ENST00000464956 RB1CC1Q8TDY2 1594 aa6.59□□□□□ -1.35
USP40-211ENST00000464956 AEBP2Q6ZN18 517 aaPredicted RBP6.56□□□□□ -1.36
USP40-211ENST00000464956 CUX2O14529 1486 aa6.53□□□□□ -1.36
USP40-211ENST00000464956 CCDC180Q9P1Z9 1646 aa6.51□□□□□ -1.37
USP40-211ENST00000464956 CC2D2AQ9P2K1 1620 aa6.45□□□□□ -1.38
USP40-211ENST00000464956 NACADO15069 1562 aa6.4□□□□□ -1.38
USP40-211ENST00000464956 ILDR1Q86SU0 546 aaPredicted RBP6.36□□□□□ -1.39
USP40-211ENST00000464956 ERCC6Q03468 1493 aa6.35□□□□□ -1.39
USP40-211ENST00000464956 DCAF8L2P0C7V8 631 aa6.35□□□□□ -1.39
USP40-211ENST00000464956 BICRAQ9NZM4 1560 aa6.35□□□□□ -1.39
USP40-211ENST00000464956 SHROOM4Q9ULL8 1493 aa6.31□□□□□ -1.4
USP40-211ENST00000464956 EIF4G1Q04637 1599 aaKnown RBP6.3□□□□□ -1.4
USP40-211ENST00000464956 TRHP20396 242 aaPredicted RBP6.25□□□□□ -1.41
USP40-211ENST00000464956 UNC13AQ9UPW8 1703 aa6.21□□□□□ -1.42
USP40-211ENST00000464956 OSCARQ8IYS5 282 aa6.19□□□□□ -1.42
USP40-211ENST00000464956 MYO15BQ96JP2 1530 aa6.11□□□□□ -1.43
USP40-211ENST00000464956 CYB5RLQ6IPT4 315 aa6.07□□□□□ -1.44
USP40-211ENST00000464956 SCRIBQ14160 1630 aa6.03□□□□□ -1.44
USP40-211ENST00000464956 THOC2Q8NI27 1593 aaKnown RBP6.02□□□□□ -1.45
USP40-211ENST00000464956 RIMBP3CA6NJZ7 1639 aa6.02□□□□□ -1.45
USP40-211ENST00000464956 RIMBP3BA6NNM3 1639 aa6.02□□□□□ -1.45
USP40-211ENST00000464956 RIMBP3Q9UFD9 1639 aa6.02□□□□□ -1.45
USP40-211ENST00000464956 BAZ1AQ9NRL2 1556 aaPredicted RBP6.01□□□□□ -1.45
USP40-211ENST00000464956 ARHGEF11O15085 1522 aa6□□□□□ -1.45
USP40-211ENST00000464956 NESP48681 1621 aa6□□□□□ -1.45
USP40-211ENST00000464956 SOCS7O14512 581 aa6□□□□□ -1.45
USP40-211ENST00000464956 LMTK3Q96Q04 1460 aa6□□□□□ -1.45
USP40-211ENST00000464956 SMARCA2P51531 1590 aa5.97□□□□□ -1.45
USP40-211ENST00000464956 FBXO41Q8TF61 875 aa5.97□□□□□ -1.45
USP40-211ENST00000464956 PDS5BQ9NTI5 1447 aa5.95□□□□□ -1.46
USP40-211ENST00000464956 NCAPD3P42695 1498 aa5.95□□□□□ -1.46
USP40-211ENST00000464956 ARAP1Q96P48 1450 aa5.9□□□□□ -1.47
USP40-211ENST00000464956 MRC2Q9UBG0 1479 aa5.89□□□□□ -1.47
USP40-211ENST00000464956 KDM4FA0A1W2PPD8 638 aa5.87□□□□□ -1.47
USP40-211ENST00000464956 ILDR2Q71H61 639 aa5.87□□□□□ -1.47
USP40-211ENST00000464956 LAMC3Q9Y6N6 1575 aa5.86□□□□□ -1.47
USP40-211ENST00000464956 WDR62O43379 1518 aa5.85□□□□□ -1.47
USP40-211ENST00000464956 DISP3Q9P2K9 1392 aa5.84□□□□□ -1.47
USP40-211ENST00000464956 ERCC6L2Q5T890 1561 aa5.83□□□□□ -1.48
USP40-211ENST00000464956 ATAD2BQ9ULI0 1458 aa5.83□□□□□ -1.48
USP40-211ENST00000464956 RSF1Q96T23 1441 aaPredicted RBP5.82□□□□□ -1.48
USP40-211ENST00000464956 HMGXB3Q12766 1538 aa5.8□□□□□ -1.48
USP40-211ENST00000464956 DCAF1Q9Y4B6 1507 aa5.79□□□□□ -1.48
USP40-211ENST00000464956 KIF21AQ7Z4S6 1674 aa5.79□□□□□ -1.48
USP40-211ENST00000464956 CADPSQ9ULU8 1353 aa5.77□□□□□ -1.49
USP40-211ENST00000464956 BAZ1BQ9UIG0 1483 aaKnown RBP5.75□□□□□ -1.49
USP40-211ENST00000464956 CEP164Q9UPV0 1460 aa5.74□□□□□ -1.49
USP40-211ENST00000464956 HECW2Q9P2P5 1572 aa5.74□□□□□ -1.49
USP40-211ENST00000464956 SYNJ2O15056 1496 aa5.73□□□□□ -1.49
USP40-211ENST00000464956 FBLN2P98095 1184 aa5.73□□□□□ -1.49
USP40-211ENST00000464956 ZCCHC6Q5VYS8 1495 aaKnown RBP5.71□□□□□ -1.5
USP40-211ENST00000464956 FANCD2Q9BXW9 1451 aa5.68□□□□□ -1.5
USP40-211ENST00000464956 ZNF608Q9ULD9 1512 aaPredicted RBP5.67□□□□□ -1.5
USP40-211ENST00000464956 IFT140Q96RY7 1462 aa5.66□□□□□ -1.5
USP40-211ENST00000464956 ADGRL1O94910 1474 aa5.65□□□□□ -1.5
USP40-211ENST00000464956 GAPVD1Q14C86 1478 aa5.64□□□□□ -1.51
USP40-211ENST00000464956 FAM69CQ0P6D2 419 aa5.63□□□□□ -1.51
USP40-211ENST00000464956 URB2Q14146 1524 aaKnown RBP5.63□□□□□ -1.51
USP40-211ENST00000464956 SPATA31D1Q6ZQQ2 1576 aa5.62□□□□□ -1.51
USP40-211ENST00000464956 SMARCA4P51532 1647 aa5.61□□□□□ -1.51
USP40-211ENST00000464956 CERKQ8TCT0 537 aa5.59□□□□□ -1.51
USP40-211ENST00000464956 CHMP7Q8WUX9 453 aaPredicted RBP5.59□□□□□ -1.51
USP40-211ENST00000464956 KDM6BO15054 1643 aa5.59□□□□□ -1.52
USP40-211ENST00000464956 CLASP1Q7Z460 1538 aa5.58□□□□□ -1.52
USP40-211ENST00000464956 AQRO60306 1485 aaKnown RBP eCLIP5.57□□□□□ -1.52
USP40-211ENST00000464956 SYNJ1O43426 1573 aa5.55□□□□□ -1.52
USP40-211ENST00000464956 EIF4G3O43432 1585 aaKnown RBP5.55□□□□□ -1.52
USP40-211ENST00000464956 CHD1O14646 1710 aa5.55□□□□□ -1.52
USP40-211ENST00000464956 ABCC10Q5T3U5 1492 aa5.55□□□□□ -1.52
USP40-211ENST00000464956 PEG3Q9GZU2 1588 aa5.55□□□□□ -1.52
USP40-211ENST00000464956 NPM1P06748 294 aaKnown RBP eCLIP5.54□□□□□ -1.52
USP40-211ENST00000464956 CFTRP13569 1480 aa5.53□□□□□ -1.52
USP40-211ENST00000464956 SNAPC4Q5SXM2 1469 aa5.49□□□□□ -1.53
USP40-211ENST00000464956 TOP2BQ02880 1626 aa5.48□□□□□ -1.53
USP40-211ENST00000464956 MROH2BQ7Z745 1585 aa5.47□□□□□ -1.53
USP40-211ENST00000464956 KIF13AQ9H1H9 1805 aa5.47□□□□□ -1.53
USP40-211ENST00000464956 TOPBP1Q92547 1522 aa5.47□□□□□ -1.53
USP40-211ENST00000464956 TDRD9Q8NDG6 1382 aaKnown RBP5.46□□□□□ -1.54
USP40-211ENST00000464956 ABCC8Q09428 1581 aa5.46□□□□□ -1.54
USP40-211ENST00000464956 MAGI1Q96QZ7 1491 aaPredicted RBP5.45□□□□□ -1.54
USP40-211ENST00000464956 DIP2BQ9P265 1576 aa5.44□□□□□ -1.54
USP40-211ENST00000464956 MAPKBP1O60336 1514 aa5.43□□□□□ -1.54
USP40-211ENST00000464956 PCF11O94913 1555 aaKnown RBP5.42□□□□□ -1.54
USP40-211ENST00000464956 PHF23Q9BUL5 403 aaPredicted RBP5.41□□□□□ -1.54
USP40-211ENST00000464956 GRIN2BQ13224 1484 aa5.4□□□□□ -1.54
USP40-211ENST00000464956 HSPA2P54652 639 aa5.4□□□□□ -1.54
USP40-211ENST00000464956 TARBP1Q13395 1621 aaKnown RBP5.39□□□□□ -1.55
USP40-211ENST00000464956 SOGA1O94964 1423 aa5.39□□□□□ -1.55
USP40-211ENST00000464956 PTPRMP28827 1452 aa5.39□□□□□ -1.55
USP40-211ENST00000464956 POLA1P09884 1462 aaPredicted RBP5.38□□□□□ -1.55
USP40-211ENST00000464956 COL17A1Q9UMD9 1497 aaPredicted RBP5.38□□□□□ -1.55
USP40-211ENST00000464956 CEP170Q5SW79 1584 aa5.38□□□□□ -1.55
USP40-211ENST00000464956 DMRT2Q9Y5R5 561 aa5.37□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms