RNA–Protein interactions for RNA: ENST00000464187.1

COL5A1-205, Transcript of collagen type V alpha 1 chain, humanhuman

TSL 2

Gene COL5A1, Length 1,830 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-205ENST00000464187 NISCHQ9Y2I1 1504 aa32.98■■■□□ 2.87
COL5A1-205ENST00000464187 CCDC180Q9P1Z9 1646 aa28.78■■■□□ 2.2
COL5A1-205ENST00000464187 ZCCHC6Q5VYS8 1495 aaKnown RBP27.66■■■□□ 2.02
COL5A1-205ENST00000464187 ABCC9O60706 1549 aa27.49■■□□□ 1.99
COL5A1-205ENST00000464187 DCAF8L2P0C7V8 631 aa27.37■■□□□ 1.97
COL5A1-205ENST00000464187 DCAF1Q9Y4B6 1507 aa27.25■■□□□ 1.95
COL5A1-205ENST00000464187 MYO15BQ96JP2 1530 aa27.01■■□□□ 1.92
COL5A1-205ENST00000464187 NACADO15069 1562 aa26.91■■□□□ 1.9
COL5A1-205ENST00000464187 SHROOM4Q9ULL8 1493 aa26.8■■□□□ 1.88
COL5A1-205ENST00000464187 RB1CC1Q8TDY2 1594 aa26.72■■□□□ 1.87
COL5A1-205ENST00000464187 SCRIBQ14160 1630 aa26.49■■□□□ 1.83
COL5A1-205ENST00000464187 UNC13AQ9UPW8 1703 aa26.11■■□□□ 1.77
COL5A1-205ENST00000464187 BICRAQ9NZM4 1560 aa25.91■■□□□ 1.74
COL5A1-205ENST00000464187 PABPN1Q86U42 306 aaKnown RBP eCLIP25.91■■□□□ 1.74
COL5A1-205ENST00000464187 SUPT5HO00267 1087 aaKnown RBP25.7■■□□□ 1.7
COL5A1-205ENST00000464187 CECR2Q9BXF3 1484 aa25.66■■□□□ 1.7
COL5A1-205ENST00000464187 RSF1Q96T23 1441 aaPredicted RBP25.53■■□□□ 1.68
COL5A1-205ENST00000464187 BAZ1AQ9NRL2 1556 aaPredicted RBP25.48■■□□□ 1.67
COL5A1-205ENST00000464187 MROH2BQ7Z745 1585 aa25.47■■□□□ 1.67
COL5A1-205ENST00000464187 SMARCA4P51532 1647 aa25.37■■□□□ 1.65
COL5A1-205ENST00000464187 WIZO95785 1651 aa25.23■■□□□ 1.63
COL5A1-205ENST00000464187 EIF4G1Q04637 1599 aaKnown RBP25.17■■□□□ 1.62
COL5A1-205ENST00000464187 PEG3Q9GZU2 1588 aa25.08■■□□□ 1.6
COL5A1-205ENST00000464187 ATAD2BQ9ULI0 1458 aa25.04■■□□□ 1.6
COL5A1-205ENST00000464187 SMARCA2P51531 1590 aa25■■□□□ 1.59
COL5A1-205ENST00000464187 TOP2AP11388 1531 aaKnown RBP24.97■■□□□ 1.59
COL5A1-205ENST00000464187 BAZ1BQ9UIG0 1483 aaKnown RBP24.89■■□□□ 1.57
COL5A1-205ENST00000464187 NCAPD3P42695 1498 aa24.86■■□□□ 1.57
COL5A1-205ENST00000464187 CC2D2AQ9P2K1 1620 aa24.84■■□□□ 1.57
COL5A1-205ENST00000464187 HMGXB3Q12766 1538 aa24.78■■□□□ 1.56
COL5A1-205ENST00000464187 CCDC88BA6NC98 1476 aa24.74■■□□□ 1.55
COL5A1-205ENST00000464187 CHIC1Q5VXU3 224 aa24.48■■□□□ 1.51
COL5A1-205ENST00000464187 DNAJC5BQ9UF47 199 aa24.46■■□□□ 1.51
COL5A1-205ENST00000464187 CFTRP13569 1480 aa24.26■■□□□ 1.47
COL5A1-205ENST00000464187 CADPSQ9ULU8 1353 aa24.23■■□□□ 1.47
COL5A1-205ENST00000464187 TRIM41Q8WV44 630 aa24.17■■□□□ 1.46
COL5A1-205ENST00000464187 ABCC8Q09428 1581 aa24.14■■□□□ 1.45
COL5A1-205ENST00000464187 NESP48681 1621 aa24.06■■□□□ 1.44
COL5A1-205ENST00000464187 WRNQ14191 1432 aaPredicted RBP eCLIP24.03■■□□□ 1.44
COL5A1-205ENST00000464187 LAMC3Q9Y6N6 1575 aa24.02■■□□□ 1.44
COL5A1-205ENST00000464187 PRDM2Q13029 1718 aa24■■□□□ 1.43
COL5A1-205ENST00000464187 FANCD2Q9BXW9 1451 aa23.95■■□□□ 1.42
COL5A1-205ENST00000464187 SYNJ1O43426 1573 aa23.91■■□□□ 1.42
COL5A1-205ENST00000464187 PDS5BQ9NTI5 1447 aa23.88■■□□□ 1.41
COL5A1-205ENST00000464187 CUX1P39880 1505 aa23.83■■□□□ 1.4
COL5A1-205ENST00000464187 TOP2BQ02880 1626 aa23.82■■□□□ 1.4
COL5A1-205ENST00000464187 CEP164Q9UPV0 1460 aa23.81■■□□□ 1.4
COL5A1-205ENST00000464187 BIVM-ERCC5R4GMW8 1640 aa23.77■■□□□ 1.4
COL5A1-205ENST00000464187 FAM9AQ8IZU1 332 aaPredicted RBP23.73■■□□□ 1.39
COL5A1-205ENST00000464187 KIF21AQ7Z4S6 1674 aa23.71■■□□□ 1.39
COL5A1-205ENST00000464187 SOGA1O94964 1423 aa23.67■■□□□ 1.38
COL5A1-205ENST00000464187 DNMBPQ6XZF7 1577 aa23.66■■□□□ 1.38
COL5A1-205ENST00000464187 URB2Q14146 1524 aaKnown RBP23.65■■□□□ 1.38
COL5A1-205ENST00000464187 TOPBP1Q92547 1522 aa23.65■■□□□ 1.38
COL5A1-205ENST00000464187 LOC105371045A0A1W2PR82 267 aa23.62■■□□□ 1.37
COL5A1-205ENST00000464187 FGD5Q6ZNL6 1462 aa23.61■■□□□ 1.37
COL5A1-205ENST00000464187 ERCC6Q03468 1493 aa23.59■■□□□ 1.37
COL5A1-205ENST00000464187 RUSC2Q8N2Y8 1516 aa23.59■■□□□ 1.37
COL5A1-205ENST00000464187 EEA1Q15075 1411 aa23.57■■□□□ 1.36
COL5A1-205ENST00000464187 MRC2Q9UBG0 1479 aa23.56■■□□□ 1.36
COL5A1-205ENST00000464187 POLA1P09884 1462 aaPredicted RBP23.53■■□□□ 1.36
COL5A1-205ENST00000464187 CSRNP3Q8WYN3 585 aa23.49■■□□□ 1.35
COL5A1-205ENST00000464187 RAD54L2Q9Y4B4 1467 aa23.46■■□□□ 1.35
COL5A1-205ENST00000464187 KIF27Q86VH2 1401 aa23.45■■□□□ 1.34
COL5A1-205ENST00000464187 WDR62O43379 1518 aa23.44■■□□□ 1.34
COL5A1-205ENST00000464187 CUX2O14529 1486 aa23.43■■□□□ 1.34
COL5A1-205ENST00000464187 EHMT2Q96KQ7 1210 aa23.41■■□□□ 1.34
COL5A1-205ENST00000464187 THOC2Q8NI27 1593 aaKnown RBP23.4■■□□□ 1.34
COL5A1-205ENST00000464187 ABCA10Q8WWZ4 1543 aa23.39■■□□□ 1.34
COL5A1-205ENST00000464187 TARBP1Q13395 1621 aaKnown RBP23.29■■□□□ 1.32
COL5A1-205ENST00000464187 IGF1RP08069 1367 aa23.28■■□□□ 1.32
COL5A1-205ENST00000464187 WDR97A6NE52 1622 aa23.27■■□□□ 1.32
COL5A1-205ENST00000464187 TDRD9Q8NDG6 1382 aaKnown RBP23.27■■□□□ 1.32
COL5A1-205ENST00000464187 IFT140Q96RY7 1462 aa23.25■■□□□ 1.31
COL5A1-205ENST00000464187 KIF21BO75037 1637 aa23.24■■□□□ 1.31
COL5A1-205ENST00000464187 GOLGA3Q08378 1498 aa23.23■■□□□ 1.31
COL5A1-205ENST00000464187 PRXQ9BXM0 1461 aa23.23■■□□□ 1.31
COL5A1-205ENST00000464187 GAPVD1Q14C86 1478 aa23.2■■□□□ 1.3
COL5A1-205ENST00000464187 RAPGEF2Q9Y4G8 1499 aa23.2■■□□□ 1.3
COL5A1-205ENST00000464187 ABCA5Q8WWZ7 1642 aa23.19■■□□□ 1.3
COL5A1-205ENST00000464187 UBTFP17480 764 aaKnown RBP23.18■■□□□ 1.3
COL5A1-205ENST00000464187 AQRO60306 1485 aaKnown RBP eCLIP23.15■■□□□ 1.3
COL5A1-205ENST00000464187 CARMIL1Q5VZK9 1371 aa23.15■■□□□ 1.3
COL5A1-205ENST00000464187 ZNF608Q9ULD9 1512 aaPredicted RBP23.14■■□□□ 1.3
COL5A1-205ENST00000464187 PCGF6Q9BYE7 350 aa23.14■■□□□ 1.29
COL5A1-205ENST00000464187 ERICH3Q5RHP9 1530 aa23.14■■□□□ 1.29
COL5A1-205ENST00000464187 TNIKQ9UKE5 1360 aa23.13■■□□□ 1.29
COL5A1-205ENST00000464187 CUL7Q14999 1698 aa23.04■■□□□ 1.28
COL5A1-205ENST00000464187 GRIN2BQ13224 1484 aa23.04■■□□□ 1.28
COL5A1-205ENST00000464187 EIF4G3O43432 1585 aaKnown RBP23.02■■□□□ 1.28
COL5A1-205ENST00000464187 PBRM1Q86U86 1689 aa23■■□□□ 1.27
COL5A1-205ENST00000464187 CEP162Q5TB80 1403 aa22.99■■□□□ 1.27
COL5A1-205ENST00000464187 HRCP23327 699 aa22.94■■□□□ 1.26
COL5A1-205ENST00000464187 FHAD1B1AJZ9 1412 aa22.94■■□□□ 1.26
COL5A1-205ENST00000464187 TRIM26Q12899 539 aaPredicted RBP22.92■■□□□ 1.26
COL5A1-205ENST00000464187 SNAPC4Q5SXM2 1469 aa22.91■■□□□ 1.26
COL5A1-205ENST00000464187 ADAMTS12P58397 1594 aa22.91■■□□□ 1.26
COL5A1-205ENST00000464187 RANGAP1P46060 587 aaPredicted RBP22.88■■□□□ 1.25
COL5A1-205ENST00000464187 CLIP1P30622 1438 aa22.87■■□□□ 1.25
COL5A1-205ENST00000464187 MAGI1Q96QZ7 1491 aaPredicted RBP22.86■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms