RNA–Protein interactions for RNA: ENST00000461055.2

NEDD9-206, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 3

Gene NEDD9, Length 592 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-206ENST00000461055 NISCHQ9Y2I1 1504 aa24.58■■□□□ 1.53
NEDD9-206ENST00000461055 ABCC9O60706 1549 aa21.95■■□□□ 1.1
NEDD9-206ENST00000461055 CCDC180Q9P1Z9 1646 aa21.45■■□□□ 1.02
NEDD9-206ENST00000461055 DNAJC5BQ9UF47 199 aa20.95■□□□□ 0.94
NEDD9-206ENST00000461055 ZCCHC6Q5VYS8 1495 aaKnown RBP20.66■□□□□ 0.9
NEDD9-206ENST00000461055 DCAF8L2P0C7V8 631 aa20.64■□□□□ 0.89
NEDD9-206ENST00000461055 RB1CC1Q8TDY2 1594 aa20.6■□□□□ 0.89
NEDD9-206ENST00000461055 PABPN1Q86U42 306 aaKnown RBP eCLIP20.54■□□□□ 0.88
NEDD9-206ENST00000461055 DCAF1Q9Y4B6 1507 aa20.45■□□□□ 0.86
NEDD9-206ENST00000461055 NACADO15069 1562 aa20.41■□□□□ 0.86
NEDD9-206ENST00000461055 MYO15BQ96JP2 1530 aa20.2■□□□□ 0.82
NEDD9-206ENST00000461055 UNC13AQ9UPW8 1703 aa20.19■□□□□ 0.82
NEDD9-206ENST00000461055 BICRAQ9NZM4 1560 aa20.12■□□□□ 0.81
NEDD9-206ENST00000461055 SHROOM4Q9ULL8 1493 aa19.93■□□□□ 0.78
NEDD9-206ENST00000461055 SCRIBQ14160 1630 aa19.74■□□□□ 0.75
NEDD9-206ENST00000461055 CECR2Q9BXF3 1484 aa19.73■□□□□ 0.75
NEDD9-206ENST00000461055 CC2D2AQ9P2K1 1620 aa19.72■□□□□ 0.75
NEDD9-206ENST00000461055 EIF4G1Q04637 1599 aaKnown RBP19.6■□□□□ 0.73
NEDD9-206ENST00000461055 SUPT5HO00267 1087 aaKnown RBP19.32■□□□□ 0.68
NEDD9-206ENST00000461055 DNAJC5Q9H3Z4 198 aa19.23■□□□□ 0.67
NEDD9-206ENST00000461055 RSF1Q96T23 1441 aaPredicted RBP19.08■□□□□ 0.65
NEDD9-206ENST00000461055 BAZ1AQ9NRL2 1556 aaPredicted RBP19.01■□□□□ 0.63
NEDD9-206ENST00000461055 AEBP2Q6ZN18 517 aaPredicted RBP18.98■□□□□ 0.63
NEDD9-206ENST00000461055 NCAPD3P42695 1498 aa18.92■□□□□ 0.62
NEDD9-206ENST00000461055 MROH2BQ7Z745 1585 aa18.91■□□□□ 0.62
NEDD9-206ENST00000461055 ATAD2BQ9ULI0 1458 aa18.88■□□□□ 0.61
NEDD9-206ENST00000461055 ERCC6Q03468 1493 aa18.87■□□□□ 0.61
NEDD9-206ENST00000461055 NESP48681 1621 aa18.83■□□□□ 0.61
NEDD9-206ENST00000461055 SMARCA4P51532 1647 aa18.83■□□□□ 0.61
NEDD9-206ENST00000461055 CUX2O14529 1486 aa18.81■□□□□ 0.6
NEDD9-206ENST00000461055 WIZO95785 1651 aa18.73■□□□□ 0.59
NEDD9-206ENST00000461055 SMARCA2P51531 1590 aa18.69■□□□□ 0.58
NEDD9-206ENST00000461055 PEG3Q9GZU2 1588 aa18.68■□□□□ 0.58
NEDD9-206ENST00000461055 HMGXB3Q12766 1538 aa18.66■□□□□ 0.58
NEDD9-206ENST00000461055 TOP2AP11388 1531 aaKnown RBP18.64■□□□□ 0.58
NEDD9-206ENST00000461055 BAZ1BQ9UIG0 1483 aaKnown RBP18.64■□□□□ 0.57
NEDD9-206ENST00000461055 CHIC1Q5VXU3 224 aa18.62■□□□□ 0.57
NEDD9-206ENST00000461055 THOC2Q8NI27 1593 aaKnown RBP18.5■□□□□ 0.55
NEDD9-206ENST00000461055 LAMC3Q9Y6N6 1575 aa18.44■□□□□ 0.54
NEDD9-206ENST00000461055 CCDC88BA6NC98 1476 aa18.43■□□□□ 0.54
NEDD9-206ENST00000461055 KIF21AQ7Z4S6 1674 aa18.43■□□□□ 0.54
NEDD9-206ENST00000461055 PDS5BQ9NTI5 1447 aa18.4■□□□□ 0.54
NEDD9-206ENST00000461055 TRIM41Q8WV44 630 aa18.4■□□□□ 0.54
NEDD9-206ENST00000461055 CADPSQ9ULU8 1353 aa18.39■□□□□ 0.53
NEDD9-206ENST00000461055 MRC2Q9UBG0 1479 aa18.26■□□□□ 0.51
NEDD9-206ENST00000461055 WDR62O43379 1518 aa18.19■□□□□ 0.5
NEDD9-206ENST00000461055 FANCD2Q9BXW9 1451 aa18.16■□□□□ 0.5
NEDD9-206ENST00000461055 CEP164Q9UPV0 1460 aa18.14■□□□□ 0.5
NEDD9-206ENST00000461055 CFTRP13569 1480 aa18.09■□□□□ 0.49
NEDD9-206ENST00000461055 OSCARQ8IYS5 282 aa18.09■□□□□ 0.49
NEDD9-206ENST00000461055 URB2Q14146 1524 aaKnown RBP18.06■□□□□ 0.48
NEDD9-206ENST00000461055 WRNQ14191 1432 aaPredicted RBP eCLIP17.99■□□□□ 0.47
NEDD9-206ENST00000461055 ABCC8Q09428 1581 aa17.96■□□□□ 0.46
NEDD9-206ENST00000461055 EEA1Q15075 1411 aa17.93■□□□□ 0.46
NEDD9-206ENST00000461055 ZNF608Q9ULD9 1512 aaPredicted RBP17.92■□□□□ 0.46
NEDD9-206ENST00000461055 PRDM2Q13029 1718 aa17.86■□□□□ 0.45
NEDD9-206ENST00000461055 TOP2BQ02880 1626 aa17.82■□□□□ 0.44
NEDD9-206ENST00000461055 LOC105371045A0A1W2PR82 267 aa17.81■□□□□ 0.44
NEDD9-206ENST00000461055 SYNJ1O43426 1573 aa17.8■□□□□ 0.44
NEDD9-206ENST00000461055 TOPBP1Q92547 1522 aa17.79■□□□□ 0.44
NEDD9-206ENST00000461055 RIMBP3CA6NJZ7 1639 aa17.79■□□□□ 0.44
NEDD9-206ENST00000461055 RIMBP3BA6NNM3 1639 aa17.79■□□□□ 0.44
NEDD9-206ENST00000461055 RIMBP3Q9UFD9 1639 aa17.79■□□□□ 0.44
NEDD9-206ENST00000461055 BIVM-ERCC5R4GMW8 1640 aa17.79■□□□□ 0.44
NEDD9-206ENST00000461055 IFT140Q96RY7 1462 aa17.78■□□□□ 0.44
NEDD9-206ENST00000461055 CYB5RLQ6IPT4 315 aa17.78■□□□□ 0.44
NEDD9-206ENST00000461055 FAM9AQ8IZU1 332 aaPredicted RBP17.78■□□□□ 0.44
NEDD9-206ENST00000461055 AQRO60306 1485 aaKnown RBP eCLIP17.75■□□□□ 0.43
NEDD9-206ENST00000461055 FBLN2P98095 1184 aa17.73■□□□□ 0.43
NEDD9-206ENST00000461055 CSRNP3Q8WYN3 585 aa17.73■□□□□ 0.43
NEDD9-206ENST00000461055 ARHGEF11O15085 1522 aa17.72■□□□□ 0.43
NEDD9-206ENST00000461055 SOGA1O94964 1423 aa17.71■□□□□ 0.43
NEDD9-206ENST00000461055 CUX1P39880 1505 aa17.68■□□□□ 0.42
NEDD9-206ENST00000461055 EIF4G3O43432 1585 aaKnown RBP17.66■□□□□ 0.42
NEDD9-206ENST00000461055 RAD54L2Q9Y4B4 1467 aa17.65■□□□□ 0.42
NEDD9-206ENST00000461055 DNMBPQ6XZF7 1577 aa17.64■□□□□ 0.41
NEDD9-206ENST00000461055 TDRD9Q8NDG6 1382 aaKnown RBP17.64■□□□□ 0.41
NEDD9-206ENST00000461055 TARBP1Q13395 1621 aaKnown RBP17.61■□□□□ 0.41
NEDD9-206ENST00000461055 TRHP20396 242 aaPredicted RBP17.61■□□□□ 0.41
NEDD9-206ENST00000461055 POLA1P09884 1462 aaPredicted RBP17.6■□□□□ 0.41
NEDD9-206ENST00000461055 CHD1O14646 1710 aa17.58■□□□□ 0.41
NEDD9-206ENST00000461055 RUSC2Q8N2Y8 1516 aa17.57■□□□□ 0.4
NEDD9-206ENST00000461055 GOLGA3Q08378 1498 aa17.57■□□□□ 0.4
NEDD9-206ENST00000461055 KIF27Q86VH2 1401 aa17.57■□□□□ 0.4
NEDD9-206ENST00000461055 TNIKQ9UKE5 1360 aa17.57■□□□□ 0.4
NEDD9-206ENST00000461055 ARAP1Q96P48 1450 aa17.56■□□□□ 0.4
NEDD9-206ENST00000461055 KIF21BO75037 1637 aa17.56■□□□□ 0.4
NEDD9-206ENST00000461055 CHMP7Q8WUX9 453 aaPredicted RBP17.49■□□□□ 0.39
NEDD9-206ENST00000461055 FGD5Q6ZNL6 1462 aa17.49■□□□□ 0.39
NEDD9-206ENST00000461055 UBTFP17480 764 aaKnown RBP17.47■□□□□ 0.39
NEDD9-206ENST00000461055 SNAPC4Q5SXM2 1469 aa17.47■□□□□ 0.39
NEDD9-206ENST00000461055 ERICH3Q5RHP9 1530 aa17.47■□□□□ 0.39
NEDD9-206ENST00000461055 PRXQ9BXM0 1461 aa17.44■□□□□ 0.38
NEDD9-206ENST00000461055 ABCA10Q8WWZ4 1543 aa17.42■□□□□ 0.38
NEDD9-206ENST00000461055 EHMT2Q96KQ7 1210 aa17.4■□□□□ 0.38
NEDD9-206ENST00000461055 CEP162Q5TB80 1403 aa17.39■□□□□ 0.38
NEDD9-206ENST00000461055 CLASP1Q7Z460 1538 aa17.37■□□□□ 0.37
NEDD9-206ENST00000461055 IGF1RP08069 1367 aa17.37■□□□□ 0.37
NEDD9-206ENST00000461055 RAPGEF2Q9Y4G8 1499 aa17.36■□□□□ 0.37
NEDD9-206ENST00000461055 GRIN2BQ13224 1484 aa17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms