RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 NISCHQ9Y2I1 1504 aa25.78■■□□□ 1.72
SCN9A-205ENST00000454569 AEBP2Q6ZN18 517 aaPredicted RBP24.8■■□□□ 1.56
SCN9A-205ENST00000454569 CHIC1Q5VXU3 224 aa24.78■■□□□ 1.56
SCN9A-205ENST00000454569 CCDC180Q9P1Z9 1646 aa22.64■■□□□ 1.21
SCN9A-205ENST00000454569 PHF23Q9BUL5 403 aaPredicted RBP21.92■■□□□ 1.1
SCN9A-205ENST00000454569 ABCC9O60706 1549 aa21.76■■□□□ 1.07
SCN9A-205ENST00000454569 ZCCHC6Q5VYS8 1495 aaKnown RBP21.57■■□□□ 1.04
SCN9A-205ENST00000454569 DCAF8L2P0C7V8 631 aa21.4■■□□□ 1.02
SCN9A-205ENST00000454569 DCAF1Q9Y4B6 1507 aa21.27■□□□□ 0.99
SCN9A-205ENST00000454569 NACADO15069 1562 aa21.13■□□□□ 0.97
SCN9A-205ENST00000454569 MYO15BQ96JP2 1530 aa21.12■□□□□ 0.97
SCN9A-205ENST00000454569 RB1CC1Q8TDY2 1594 aa21.04■□□□□ 0.96
SCN9A-205ENST00000454569 SENP3Q9H4L4 574 aaPredicted RBP20.84■□□□□ 0.93
SCN9A-205ENST00000454569 SHROOM4Q9ULL8 1493 aa20.83■□□□□ 0.93
SCN9A-205ENST00000454569 SCRIBQ14160 1630 aa20.81■□□□□ 0.92
SCN9A-205ENST00000454569 UNC13AQ9UPW8 1703 aa20.79■□□□□ 0.92
SCN9A-205ENST00000454569 BICRAQ9NZM4 1560 aa20.52■□□□□ 0.88
SCN9A-205ENST00000454569 PABPN1Q86U42 306 aaKnown RBP eCLIP20.46■□□□□ 0.87
SCN9A-205ENST00000454569 PLPPR3Q6T4P5 718 aa20.36■□□□□ 0.85
SCN9A-205ENST00000454569 CECR2Q9BXF3 1484 aa20.13■□□□□ 0.81
SCN9A-205ENST00000454569 MROH2BQ7Z745 1585 aa19.95■□□□□ 0.78
SCN9A-205ENST00000454569 SMARCA4P51532 1647 aa19.91■□□□□ 0.78
SCN9A-205ENST00000454569 BAZ1AQ9NRL2 1556 aaPredicted RBP19.9■□□□□ 0.78
SCN9A-205ENST00000454569 EIF4G1Q04637 1599 aaKnown RBP19.87■□□□□ 0.77
SCN9A-205ENST00000454569 RSF1Q96T23 1441 aaPredicted RBP19.87■□□□□ 0.77
SCN9A-205ENST00000454569 SUPT5HO00267 1087 aaKnown RBP19.83■□□□□ 0.77
SCN9A-205ENST00000454569 WIZO95785 1651 aa19.81■□□□□ 0.76
SCN9A-205ENST00000454569 CC2D2AQ9P2K1 1620 aa19.7■□□□□ 0.74
SCN9A-205ENST00000454569 PEG3Q9GZU2 1588 aa19.65■□□□□ 0.74
SCN9A-205ENST00000454569 ATAD2BQ9ULI0 1458 aa19.65■□□□□ 0.74
SCN9A-205ENST00000454569 DNAJC5BQ9UF47 199 aa19.6■□□□□ 0.73
SCN9A-205ENST00000454569 SMARCA2P51531 1590 aa19.58■□□□□ 0.73
SCN9A-205ENST00000454569 NCAPD3P42695 1498 aa19.52■□□□□ 0.71
SCN9A-205ENST00000454569 TOP2AP11388 1531 aaKnown RBP19.5■□□□□ 0.71
SCN9A-205ENST00000454569 BAZ1BQ9UIG0 1483 aaKnown RBP19.49■□□□□ 0.71
SCN9A-205ENST00000454569 HMGXB3Q12766 1538 aa19.45■□□□□ 0.7
SCN9A-205ENST00000454569 CCDC88BA6NC98 1476 aa19.33■□□□□ 0.68
SCN9A-205ENST00000454569 FOXD1Q16676 465 aa19.32■□□□□ 0.68
SCN9A-205ENST00000454569 ADRA2BP18089 450 aa19.14■□□□□ 0.65
SCN9A-205ENST00000454569 PPP6R1Q9UPN7 881 aa19.12■□□□□ 0.65
SCN9A-205ENST00000454569 NESP48681 1621 aa19.04■□□□□ 0.64
SCN9A-205ENST00000454569 CFTRP13569 1480 aa18.99■□□□□ 0.63
SCN9A-205ENST00000454569 CADPSQ9ULU8 1353 aa18.98■□□□□ 0.63
SCN9A-205ENST00000454569 PRDM2Q13029 1718 aa18.96■□□□□ 0.63
SCN9A-205ENST00000454569 LAMC3Q9Y6N6 1575 aa18.91■□□□□ 0.62
SCN9A-205ENST00000454569 ABCC8Q09428 1581 aa18.85■□□□□ 0.61
SCN9A-205ENST00000454569 KIF21AQ7Z4S6 1674 aa18.83■□□□□ 0.6
SCN9A-205ENST00000454569 FANCD2Q9BXW9 1451 aa18.79■□□□□ 0.6
SCN9A-205ENST00000454569 PDS5BQ9NTI5 1447 aa18.72■□□□□ 0.59
SCN9A-205ENST00000454569 SYNJ1O43426 1573 aa18.7■□□□□ 0.58
SCN9A-205ENST00000454569 CEP164Q9UPV0 1460 aa18.68■□□□□ 0.58
SCN9A-205ENST00000454569 WRNQ14191 1432 aaPredicted RBP eCLIP18.67■□□□□ 0.58
SCN9A-205ENST00000454569 CUX1P39880 1505 aa18.67■□□□□ 0.58
SCN9A-205ENST00000454569 URB2Q14146 1524 aaKnown RBP18.63■□□□□ 0.57
SCN9A-205ENST00000454569 TRIM41Q8WV44 630 aa18.61■□□□□ 0.57
SCN9A-205ENST00000454569 BIVM-ERCC5R4GMW8 1640 aa18.61■□□□□ 0.57
SCN9A-205ENST00000454569 ERCC6Q03468 1493 aa18.61■□□□□ 0.57
SCN9A-205ENST00000454569 TOP2BQ02880 1626 aa18.6■□□□□ 0.57
SCN9A-205ENST00000454569 TOPBP1Q92547 1522 aa18.57■□□□□ 0.56
SCN9A-205ENST00000454569 DNMBPQ6XZF7 1577 aa18.56■□□□□ 0.56
SCN9A-205ENST00000454569 THOC2Q8NI27 1593 aaKnown RBP18.56■□□□□ 0.56
SCN9A-205ENST00000454569 MRC2Q9UBG0 1479 aa18.54■□□□□ 0.56
SCN9A-205ENST00000454569 FGD5Q6ZNL6 1462 aa18.49■□□□□ 0.55
SCN9A-205ENST00000454569 WDR62O43379 1518 aa18.48■□□□□ 0.55
SCN9A-205ENST00000454569 POLA1P09884 1462 aaPredicted RBP18.45■□□□□ 0.54
SCN9A-205ENST00000454569 RAD54L2Q9Y4B4 1467 aa18.43■□□□□ 0.54
SCN9A-205ENST00000454569 RUSC2Q8N2Y8 1516 aa18.41■□□□□ 0.54
SCN9A-205ENST00000454569 SOGA1O94964 1423 aa18.4■□□□□ 0.54
SCN9A-205ENST00000454569 CUX2O14529 1486 aa18.4■□□□□ 0.54
SCN9A-205ENST00000454569 KCNA4P22459 653 aa18.39■□□□□ 0.53
SCN9A-205ENST00000454569 TARBP1Q13395 1621 aaKnown RBP18.36■□□□□ 0.53
SCN9A-205ENST00000454569 FAM9AQ8IZU1 332 aaPredicted RBP18.34■□□□□ 0.53
SCN9A-205ENST00000454569 WDR97A6NE52 1622 aa18.34■□□□□ 0.53
SCN9A-205ENST00000454569 PIAS4Q8N2W9 510 aaPredicted RBP18.32■□□□□ 0.52
SCN9A-205ENST00000454569 ABCA10Q8WWZ4 1543 aa18.29■□□□□ 0.52
SCN9A-205ENST00000454569 ZNF608Q9ULD9 1512 aaPredicted RBP18.26■□□□□ 0.51
SCN9A-205ENST00000454569 TDRD9Q8NDG6 1382 aaKnown RBP18.26■□□□□ 0.51
SCN9A-205ENST00000454569 IFT140Q96RY7 1462 aa18.25■□□□□ 0.51
SCN9A-205ENST00000454569 ABCA5Q8WWZ7 1642 aa18.22■□□□□ 0.51
SCN9A-205ENST00000454569 AQRO60306 1485 aaKnown RBP eCLIP18.21■□□□□ 0.516e-14■□□□□ 9.4
SCN9A-205ENST00000454569 KIF27Q86VH2 1401 aa18.19■□□□□ 0.5
SCN9A-205ENST00000454569 EIF4G3O43432 1585 aaKnown RBP18.17■□□□□ 0.5
SCN9A-205ENST00000454569 CSRNP3Q8WYN3 585 aa18.16■□□□□ 0.5
SCN9A-205ENST00000454569 PBRM1Q86U86 1689 aa18.15■□□□□ 0.5
SCN9A-205ENST00000454569 GAPVD1Q14C86 1478 aa18.15■□□□□ 0.5
SCN9A-205ENST00000454569 EEA1Q15075 1411 aa18.14■□□□□ 0.5
SCN9A-205ENST00000454569 IGF1RP08069 1367 aa18.14■□□□□ 0.49
SCN9A-205ENST00000454569 EHMT2Q96KQ7 1210 aa18.14■□□□□ 0.49
SCN9A-205ENST00000454569 LOC105371045A0A1W2PR82 267 aa18.13■□□□□ 0.49
SCN9A-205ENST00000454569 ERICH3Q5RHP9 1530 aa18.06■□□□□ 0.48
SCN9A-205ENST00000454569 PPP4R3CPQ6ZMV5 832 aa18.04■□□□□ 0.48
SCN9A-205ENST00000454569 GRIN2BQ13224 1484 aa18.04■□□□□ 0.48
SCN9A-205ENST00000454569 PRXQ9BXM0 1461 aa18.04■□□□□ 0.48
SCN9A-205ENST00000454569 RAPGEF2Q9Y4G8 1499 aa18.03■□□□□ 0.48
SCN9A-205ENST00000454569 KIF21BO75037 1637 aa18.02■□□□□ 0.48
SCN9A-205ENST00000454569 CARMIL1Q5VZK9 1371 aa18.01■□□□□ 0.47
SCN9A-205ENST00000454569 CUL7Q14999 1698 aa18.01■□□□□ 0.47
SCN9A-205ENST00000454569 SNAPC4Q5SXM2 1469 aa18■□□□□ 0.47
SCN9A-205ENST00000454569 ADAMTS12P58397 1594 aa17.99■□□□□ 0.47
SCN9A-205ENST00000454569 GOLGA3Q08378 1498 aa17.93■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms