RNA–Protein interactions for RNA: ENST00000454018.6

SYNE1-214, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,546 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-214ENST00000454018 CHIC1Q5VXU3 224 aa21.29■■□□□ 1
SYNE1-214ENST00000454018 NISCHQ9Y2I1 1504 aa20.91■□□□□ 0.94
SYNE1-214ENST00000454018 AEBP2Q6ZN18 517 aaPredicted RBP20.9■□□□□ 0.94
SYNE1-214ENST00000454018 PHF23Q9BUL5 403 aaPredicted RBP18.91■□□□□ 0.62
SYNE1-214ENST00000454018 CCDC180Q9P1Z9 1646 aa18.63■□□□□ 0.57
SYNE1-214ENST00000454018 ABCC9O60706 1549 aa17.79■□□□□ 0.44
SYNE1-214ENST00000454018 PLPPR3Q6T4P5 718 aa17.67■□□□□ 0.42
SYNE1-214ENST00000454018 ZCCHC6Q5VYS8 1495 aaKnown RBP17.51■□□□□ 0.39
SYNE1-214ENST00000454018 SENP3Q9H4L4 574 aaPredicted RBP17.43■□□□□ 0.38
SYNE1-214ENST00000454018 DCAF1Q9Y4B6 1507 aa17.37■□□□□ 0.37
SYNE1-214ENST00000454018 NACADO15069 1562 aa17.37■□□□□ 0.37
SYNE1-214ENST00000454018 MYO15BQ96JP2 1530 aa17.36■□□□□ 0.37
SYNE1-214ENST00000454018 RB1CC1Q8TDY2 1594 aa17.33■□□□□ 0.37
SYNE1-214ENST00000454018 DCAF8L2P0C7V8 631 aa17.19■□□□□ 0.34
SYNE1-214ENST00000454018 UNC13AQ9UPW8 1703 aa17.05■□□□□ 0.32
SYNE1-214ENST00000454018 SCRIBQ14160 1630 aa16.92■□□□□ 0.3
SYNE1-214ENST00000454018 BICRAQ9NZM4 1560 aa16.77■□□□□ 0.28
SYNE1-214ENST00000454018 SHROOM4Q9ULL8 1493 aa16.68■□□□□ 0.26
SYNE1-214ENST00000454018 ADRA2BP18089 450 aa16.67■□□□□ 0.26
SYNE1-214ENST00000454018 EHMT2Q96KQ7 1210 aa16.66■□□□□ 0.26
SYNE1-214ENST00000454018 KCNA4P22459 653 aa16.58■□□□□ 0.24
SYNE1-214ENST00000454018 PABPN1Q86U42 306 aaKnown RBP eCLIP16.57■□□□□ 0.24
SYNE1-214ENST00000454018 PPP6R1Q9UPN7 881 aa16.39■□□□□ 0.21
SYNE1-214ENST00000454018 EIF4G1Q04637 1599 aaKnown RBP16.31■□□□□ 0.2
SYNE1-214ENST00000454018 BAZ1AQ9NRL2 1556 aaPredicted RBP16.24■□□□□ 0.19
SYNE1-214ENST00000454018 SMARCA4P51532 1647 aa16.24■□□□□ 0.19
SYNE1-214ENST00000454018 CECR2Q9BXF3 1484 aa16.2■□□□□ 0.18
SYNE1-214ENST00000454018 CC2D2AQ9P2K1 1620 aa16.18■□□□□ 0.18
SYNE1-214ENST00000454018 FOXD1Q16676 465 aa16.15■□□□□ 0.18
SYNE1-214ENST00000454018 MROH2BQ7Z745 1585 aa16.1■□□□□ 0.17
SYNE1-214ENST00000454018 PEG3Q9GZU2 1588 aa16.08■□□□□ 0.16
SYNE1-214ENST00000454018 SMARCA2P51531 1590 aa16.06■□□□□ 0.16
SYNE1-214ENST00000454018 CSRNP3Q8WYN3 585 aa16■□□□□ 0.15
SYNE1-214ENST00000454018 ATAD2BQ9ULI0 1458 aa16■□□□□ 0.15
SYNE1-214ENST00000454018 WIZO95785 1651 aa15.99■□□□□ 0.15
SYNE1-214ENST00000454018 HMGXB3Q12766 1538 aa15.99■□□□□ 0.15
SYNE1-214ENST00000454018 RSF1Q96T23 1441 aaPredicted RBP15.98■□□□□ 0.15
SYNE1-214ENST00000454018 DNAJC5BQ9UF47 199 aa15.98■□□□□ 0.15
SYNE1-214ENST00000454018 NCAPD3P42695 1498 aa15.95■□□□□ 0.14
SYNE1-214ENST00000454018 BAZ1BQ9UIG0 1483 aaKnown RBP15.91■□□□□ 0.14
SYNE1-214ENST00000454018 SLC4A1APQ9BWU0 796 aaKnown RBP15.91■□□□□ 0.14
SYNE1-214ENST00000454018 TOP2AP11388 1531 aaKnown RBP15.85■□□□□ 0.13
SYNE1-214ENST00000454018 PPP4R3CPQ6ZMV5 832 aa15.76■□□□□ 0.11
SYNE1-214ENST00000454018 SUPT5HO00267 1087 aaKnown RBP15.67■□□□□ 0.1
SYNE1-214ENST00000454018 PRDM2Q13029 1718 aa15.6■□□□□ 0.09
SYNE1-214ENST00000454018 CCDC88BA6NC98 1476 aa15.57■□□□□ 0.08
SYNE1-214ENST00000454018 LAMC3Q9Y6N6 1575 aa15.57■□□□□ 0.08
SYNE1-214ENST00000454018 NCBP3Q53F19 620 aaKnown RBP15.54■□□□□ 0.08
SYNE1-214ENST00000454018 NESP48681 1621 aa15.47■□□□□ 0.07
SYNE1-214ENST00000454018 CADPSQ9ULU8 1353 aa15.47■□□□□ 0.07
SYNE1-214ENST00000454018 CFTRP13569 1480 aa15.47■□□□□ 0.07
SYNE1-214ENST00000454018 PIAS4Q8N2W9 510 aaPredicted RBP15.44■□□□□ 0.06
SYNE1-214ENST00000454018 KIF21AQ7Z4S6 1674 aa15.44■□□□□ 0.06
SYNE1-214ENST00000454018 NPM3O75607 178 aaKnown RBP15.43■□□□□ 0.06
SYNE1-214ENST00000454018 PDS5BQ9NTI5 1447 aa15.38■□□□□ 0.05
SYNE1-214ENST00000454018 ERCC6Q03468 1493 aa15.35■□□□□ 0.05
SYNE1-214ENST00000454018 FANCD2Q9BXW9 1451 aa15.34■□□□□ 0.05
SYNE1-214ENST00000454018 CEP164Q9UPV0 1460 aa15.32■□□□□ 0.04
SYNE1-214ENST00000454018 ZBTB22O15209 634 aa15.32■□□□□ 0.04
SYNE1-214ENST00000454018 THOC2Q8NI27 1593 aaKnown RBP15.3■□□□□ 0.04
SYNE1-214ENST00000454018 MRC2Q9UBG0 1479 aa15.23■□□□□ 0.03
SYNE1-214ENST00000454018 WDR62O43379 1518 aa15.22■□□□□ 0.03
SYNE1-214ENST00000454018 DNMBPQ6XZF7 1577 aa15.18■□□□□ 0.02
SYNE1-214ENST00000454018 URB2Q14146 1524 aaKnown RBP15.16■□□□□ 0.02
SYNE1-214ENST00000454018 ABCC8Q09428 1581 aa15.16■□□□□ 0.02
SYNE1-214ENST00000454018 BIVM-ERCC5R4GMW8 1640 aa15.13■□□□□ 0.01
SYNE1-214ENST00000454018 TOPBP1Q92547 1522 aa15.13■□□□□ 0.01
SYNE1-214ENST00000454018 CUX2O14529 1486 aa15.13■□□□□ 0.01
SYNE1-214ENST00000454018 CUX1P39880 1505 aa15.11■□□□□ 0.01
SYNE1-214ENST00000454018 TOP2BQ02880 1626 aa15.1■□□□□ 0.01
SYNE1-214ENST00000454018 WRNQ14191 1432 aaPredicted RBP eCLIP15.09■□□□□ 0.01
SYNE1-214ENST00000454018 SYNJ1O43426 1573 aa15.09■□□□□ 0.01
SYNE1-214ENST00000454018 CNKSR2Q8WXI2 1034 aa15.05■□□□□ -0
SYNE1-214ENST00000454018 POLA1P09884 1462 aaPredicted RBP15.02□□□□□ -0.01
SYNE1-214ENST00000454018 FGD5Q6ZNL6 1462 aa15.02□□□□□ -0.01
SYNE1-214ENST00000454018 SLC24A1O60721 1099 aa15.02□□□□□ -0.01
SYNE1-214ENST00000454018 WDR97A6NE52 1622 aa15.01□□□□□ -0.01
SYNE1-214ENST00000454018 TARBP1Q13395 1621 aaKnown RBP14.99□□□□□ -0.01
SYNE1-214ENST00000454018 IFT140Q96RY7 1462 aa14.97□□□□□ -0.01
SYNE1-214ENST00000454018 POTEDQ86YR6 584 aa14.91□□□□□ -0.02
SYNE1-214ENST00000454018 EIF4G3O43432 1585 aaKnown RBP14.9□□□□□ -0.02
SYNE1-214ENST00000454018 SOGA1O94964 1423 aa14.9□□□□□ -0.02
SYNE1-214ENST00000454018 RTN4Q9NQC3 1192 aaKnown RBP14.9□□□□□ -0.02
SYNE1-214ENST00000454018 ABCA10Q8WWZ4 1543 aa14.9□□□□□ -0.02
SYNE1-214ENST00000454018 RAD54L2Q9Y4B4 1467 aa14.89□□□□□ -0.03
SYNE1-214ENST00000454018 FOXD4L1Q9NU39 408 aa14.89□□□□□ -0.03
SYNE1-214ENST00000454018 ABCA5Q8WWZ7 1642 aa14.88□□□□□ -0.03
SYNE1-214ENST00000454018 PBRM1Q86U86 1689 aa14.87□□□□□ -0.03
SYNE1-214ENST00000454018 ZNF608Q9ULD9 1512 aaPredicted RBP14.84□□□□□ -0.03
SYNE1-214ENST00000454018 SCAF1Q9H7N4 1312 aaKnown RBP14.84□□□□□ -0.03
SYNE1-214ENST00000454018 TRIM41Q8WV44 630 aa14.82□□□□□ -0.04
SYNE1-214ENST00000454018 GAPVD1Q14C86 1478 aa14.78□□□□□ -0.04
SYNE1-214ENST00000454018 AMER1Q5JTC6 1135 aaPredicted RBP14.77□□□□□ -0.04
SYNE1-214ENST00000454018 AQRO60306 1485 aaKnown RBP eCLIP14.76□□□□□ -0.05
SYNE1-214ENST00000454018 TDRD9Q8NDG6 1382 aaKnown RBP14.75□□□□□ -0.05
SYNE1-214ENST00000454018 KIF27Q86VH2 1401 aa14.75□□□□□ -0.05
SYNE1-214ENST00000454018 GRIN2BQ13224 1484 aa14.75□□□□□ -0.05
SYNE1-214ENST00000454018 ERICH3Q5RHP9 1530 aa14.75□□□□□ -0.05
SYNE1-214ENST00000454018 CUL7Q14999 1698 aa14.73□□□□□ -0.05
SYNE1-214ENST00000454018 MAGI1Q96QZ7 1491 aaPredicted RBP14.71□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms