RNA–Protein interactions for RNA: ENST00000445770.3

LINC01949-201, Transcript of long intergenic non-protein coding RNA 1949, humanhuman

TSL 1 (best) BASIC

Gene LINC01949, Length 2,721 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01949-201ENST00000445770 NISCHQ9Y2I1 1504 aa20.73■□□□□ 0.91
LINC01949-201ENST00000445770 AEBP2Q6ZN18 517 aaPredicted RBP18.39■□□□□ 0.53
LINC01949-201ENST00000445770 SHROOM4Q9ULL8 1493 aa18.03■□□□□ 0.48
LINC01949-201ENST00000445770 DCAF8L2P0C7V8 631 aa17.75■□□□□ 0.43
LINC01949-201ENST00000445770 CHIC1Q5VXU3 224 aa17.58■□□□□ 0.4
LINC01949-201ENST00000445770 SUPT5HO00267 1087 aaKnown RBP17.55■□□□□ 0.4
LINC01949-201ENST00000445770 CCDC180Q9P1Z9 1646 aa17.49■□□□□ 0.39
LINC01949-201ENST00000445770 ZCCHC6Q5VYS8 1495 aaKnown RBP17.47■□□□□ 0.39
LINC01949-201ENST00000445770 ABCC9O60706 1549 aa16.83■□□□□ 0.28
LINC01949-201ENST00000445770 DCAF1Q9Y4B6 1507 aa16.77■□□□□ 0.27
LINC01949-201ENST00000445770 SCRIBQ14160 1630 aa16.75■□□□□ 0.27
LINC01949-201ENST00000445770 MYO15BQ96JP2 1530 aa16.75■□□□□ 0.27
LINC01949-201ENST00000445770 LOC105371045A0A1W2PR82 267 aa16.47■□□□□ 0.23
LINC01949-201ENST00000445770 RSF1Q96T23 1441 aaPredicted RBP16.43■□□□□ 0.22
LINC01949-201ENST00000445770 EHMT2Q96KQ7 1210 aa16.39■□□□□ 0.21
LINC01949-201ENST00000445770 CECR2Q9BXF3 1484 aa16.38■□□□□ 0.21
LINC01949-201ENST00000445770 FAM9AQ8IZU1 332 aaPredicted RBP16.31■□□□□ 0.2
LINC01949-201ENST00000445770 RB1CC1Q8TDY2 1594 aa16.3■□□□□ 0.2
LINC01949-201ENST00000445770 NACADO15069 1562 aa16.28■□□□□ 0.2
LINC01949-201ENST00000445770 MROH2BQ7Z745 1585 aa16.23■□□□□ 0.19
LINC01949-201ENST00000445770 PCGF6Q9BYE7 350 aa16.23■□□□□ 0.19
LINC01949-201ENST00000445770 PABPN1Q86U42 306 aaKnown RBP eCLIP16.19■□□□□ 0.18
LINC01949-201ENST00000445770 TRIM41Q8WV44 630 aa16.19■□□□□ 0.18
LINC01949-201ENST00000445770 WIZO95785 1651 aa16.14■□□□□ 0.17
LINC01949-201ENST00000445770 UNC13AQ9UPW8 1703 aa15.95■□□□□ 0.14
LINC01949-201ENST00000445770 PPARGC1BQ86YN6 1023 aaKnown RBP15.93■□□□□ 0.14
LINC01949-201ENST00000445770 HRCP23327 699 aa15.89■□□□□ 0.13
LINC01949-201ENST00000445770 BAZ1AQ9NRL2 1556 aaPredicted RBP15.89■□□□□ 0.13
LINC01949-201ENST00000445770 SMARCA4P51532 1647 aa15.82■□□□□ 0.12
LINC01949-201ENST00000445770 ABCC8Q09428 1581 aa15.82■□□□□ 0.12
LINC01949-201ENST00000445770 CCDC88BA6NC98 1476 aa15.79■□□□□ 0.12
LINC01949-201ENST00000445770 BICRAQ9NZM4 1560 aa15.78■□□□□ 0.12
LINC01949-201ENST00000445770 PHF23Q9BUL5 403 aaPredicted RBP15.78■□□□□ 0.12
LINC01949-201ENST00000445770 TTBK1Q5TCY1 1321 aaPredicted RBP15.76■□□□□ 0.11
LINC01949-201ENST00000445770 TOP2AP11388 1531 aaKnown RBP15.73■□□□□ 0.11
LINC01949-201ENST00000445770 TRIM26Q12899 539 aaPredicted RBP15.71■□□□□ 0.11
LINC01949-201ENST00000445770 SMARCA2P51531 1590 aa15.7■□□□□ 0.1
LINC01949-201ENST00000445770 EIF4G1Q04637 1599 aaKnown RBP15.68■□□□□ 0.1
LINC01949-201ENST00000445770 SOGA1O94964 1423 aa15.63■□□□□ 0.09
LINC01949-201ENST00000445770 RUSC2Q8N2Y8 1516 aa15.6■□□□□ 0.09
LINC01949-201ENST00000445770 RANGAP1P46060 587 aaPredicted RBP15.54■□□□□ 0.08
LINC01949-201ENST00000445770 ATAD2BQ9ULI0 1458 aa15.51■□□□□ 0.07
LINC01949-201ENST00000445770 UBTFP17480 764 aaKnown RBP15.51■□□□□ 0.07
LINC01949-201ENST00000445770 BAZ1BQ9UIG0 1483 aaKnown RBP15.48■□□□□ 0.07
LINC01949-201ENST00000445770 WRNQ14191 1432 aaPredicted RBP eCLIP15.44■□□□□ 0.06
LINC01949-201ENST00000445770 CSRNP3Q8WYN3 585 aa15.43■□□□□ 0.06
LINC01949-201ENST00000445770 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.39■□□□□ 0.05
LINC01949-201ENST00000445770 SYNJ1O43426 1573 aa15.39■□□□□ 0.05
LINC01949-201ENST00000445770 CEP162Q5TB80 1403 aa15.39■□□□□ 0.05
LINC01949-201ENST00000445770 PEG3Q9GZU2 1588 aa15.37■□□□□ 0.05
LINC01949-201ENST00000445770 TNIKQ9UKE5 1360 aa15.25■□□□□ 0.03
LINC01949-201ENST00000445770 CCER1Q8TC90 406 aaPredicted RBP15.23■□□□□ 0.03
LINC01949-201ENST00000445770 GOLGA3Q08378 1498 aa15.22■□□□□ 0.03
LINC01949-201ENST00000445770 RAPGEF2Q9Y4G8 1499 aa15.21■□□□□ 0.03
LINC01949-201ENST00000445770 EEA1Q15075 1411 aa15.16■□□□□ 0.02
LINC01949-201ENST00000445770 HNRNPUL2Q1KMD3 747 aaKnown RBP15.14■□□□□ 0.01
LINC01949-201ENST00000445770 NCAPD3P42695 1498 aa15.14■□□□□ 0.01
LINC01949-201ENST00000445770 CLIP1P30622 1438 aa15.13■□□□□ 0.01
LINC01949-201ENST00000445770 CEP164Q9UPV0 1460 aa15.12■□□□□ 0.01
LINC01949-201ENST00000445770 SENP3Q9H4L4 574 aaPredicted RBP15.12■□□□□ 0.01
LINC01949-201ENST00000445770 ZEB1P37275 1124 aaPredicted RBP15.11■□□□□ 0.01
LINC01949-201ENST00000445770 CUX1P39880 1505 aa15.1■□□□□ 0.01
LINC01949-201ENST00000445770 TOP2BQ02880 1626 aa15.08■□□□□ 0
LINC01949-201ENST00000445770 HMGXB3Q12766 1538 aa15.06■□□□□ 0
LINC01949-201ENST00000445770 DNAJC5BQ9UF47 199 aa15.06■□□□□ 0
LINC01949-201ENST00000445770 KIF21BO75037 1637 aa15.03■□□□□ -0
LINC01949-201ENST00000445770 CFTRP13569 1480 aa15.02□□□□□ -0.01
LINC01949-201ENST00000445770 APLP2Q06481 763 aa15□□□□□ -0.01
LINC01949-201ENST00000445770 CC2D2AQ9P2K1 1620 aa14.99□□□□□ -0.01
LINC01949-201ENST00000445770 BIVM-ERCC5R4GMW8 1640 aa14.97□□□□□ -0.01
LINC01949-201ENST00000445770 VPS8Q8N3P4 1428 aa14.96□□□□□ -0.01
LINC01949-201ENST00000445770 KANK4Q5T7N3 995 aaPredicted RBP14.96□□□□□ -0.01
LINC01949-201ENST00000445770 NESP48681 1621 aa14.95□□□□□ -0.02
LINC01949-201ENST00000445770 CADPSQ9ULU8 1353 aa14.93□□□□□ -0.02
LINC01949-201ENST00000445770 CUX2O14529 1486 aa14.93□□□□□ -0.02
LINC01949-201ENST00000445770 P3H3Q8IVL6 736 aa14.93□□□□□ -0.02
LINC01949-201ENST00000445770 KIF27Q86VH2 1401 aa14.93□□□□□ -0.02
LINC01949-201ENST00000445770 PRXQ9BXM0 1461 aa14.92□□□□□ -0.02
LINC01949-201ENST00000445770 ITGAEP38570 1179 aa14.9□□□□□ -0.02
LINC01949-201ENST00000445770 ARAP1Q96P48 1450 aa14.9□□□□□ -0.02
LINC01949-201ENST00000445770 FGD5Q6ZNL6 1462 aa14.87□□□□□ -0.03
LINC01949-201ENST00000445770 ATP1B4Q9UN42 357 aaPredicted RBP14.86□□□□□ -0.03
LINC01949-201ENST00000445770 RAD54L2Q9Y4B4 1467 aa14.85□□□□□ -0.03
LINC01949-201ENST00000445770 IGF1RP08069 1367 aa14.84□□□□□ -0.03
LINC01949-201ENST00000445770 FANCD2Q9BXW9 1451 aa14.83□□□□□ -0.04
LINC01949-201ENST00000445770 ERICH3Q5RHP9 1530 aa14.79□□□□□ -0.04
LINC01949-201ENST00000445770 ARHGAP35Q9NRY4 1499 aa14.79□□□□□ -0.04
LINC01949-201ENST00000445770 CARMIL1Q5VZK9 1371 aa14.78□□□□□ -0.04
LINC01949-201ENST00000445770 DIEXFQ68CQ4 756 aaKnown RBP14.77□□□□□ -0.04
LINC01949-201ENST00000445770 TDRD9Q8NDG6 1382 aaKnown RBP14.72□□□□□ -0.05
LINC01949-201ENST00000445770 POLA1P09884 1462 aaPredicted RBP14.71□□□□□ -0.06
LINC01949-201ENST00000445770 PRDM2Q13029 1718 aa14.7□□□□□ -0.06
LINC01949-201ENST00000445770 TOPBP1Q92547 1522 aa14.69□□□□□ -0.06
LINC01949-201ENST00000445770 FHOD3Q2V2M9 1422 aa14.67□□□□□ -0.06
LINC01949-201ENST00000445770 YTHDC1Q96MU7 727 aaKnown RBP14.66□□□□□ -0.06
LINC01949-201ENST00000445770 SCAF1Q9H7N4 1312 aaKnown RBP14.66□□□□□ -0.06
LINC01949-201ENST00000445770 URB2Q14146 1524 aaKnown RBP14.64□□□□□ -0.07
LINC01949-201ENST00000445770 FAM50AQ14320 339 aaKnown RBP14.64□□□□□ -0.07
LINC01949-201ENST00000445770 ARID3CA6NKF2 412 aa14.64□□□□□ -0.07
LINC01949-201ENST00000445770 ZNF316A6NFI3 1004 aaPredicted RBP14.63□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms