RNA–Protein interactions for RNA: ENST00000444268.1

COL28A1-204, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 5

Gene COL28A1, Length 1,755 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-204ENST00000444268 NISCHQ9Y2I1 1504 aa28.36■■■□□ 2.13
COL28A1-204ENST00000444268 CCDC180Q9P1Z9 1646 aa24.84■■□□□ 1.57
COL28A1-204ENST00000444268 ABCC9O60706 1549 aa23.87■■□□□ 1.41
COL28A1-204ENST00000444268 ZCCHC6Q5VYS8 1495 aaKnown RBP23.76■■□□□ 1.39
COL28A1-204ENST00000444268 DCAF8L2P0C7V8 631 aa23.57■■□□□ 1.36
COL28A1-204ENST00000444268 DCAF1Q9Y4B6 1507 aa23.39■■□□□ 1.33
COL28A1-204ENST00000444268 MYO15BQ96JP2 1530 aa23.21■■□□□ 1.31
COL28A1-204ENST00000444268 NACADO15069 1562 aa23.2■■□□□ 1.3
COL28A1-204ENST00000444268 RB1CC1Q8TDY2 1594 aa23.09■■□□□ 1.29
COL28A1-204ENST00000444268 SHROOM4Q9ULL8 1493 aa23■■□□□ 1.27
COL28A1-204ENST00000444268 SCRIBQ14160 1630 aa22.88■■□□□ 1.25
COL28A1-204ENST00000444268 UNC13AQ9UPW8 1703 aa22.69■■□□□ 1.22
COL28A1-204ENST00000444268 BICRAQ9NZM4 1560 aa22.47■■□□□ 1.19
COL28A1-204ENST00000444268 PABPN1Q86U42 306 aaKnown RBP eCLIP22.46■■□□□ 1.19
COL28A1-204ENST00000444268 SUPT5HO00267 1087 aaKnown RBP22.24■■□□□ 1.15
COL28A1-204ENST00000444268 CECR2Q9BXF3 1484 aa22.12■■□□□ 1.13
COL28A1-204ENST00000444268 MROH2BQ7Z745 1585 aa21.94■■□□□ 1.1
COL28A1-204ENST00000444268 BAZ1AQ9NRL2 1556 aaPredicted RBP21.89■■□□□ 1.1
COL28A1-204ENST00000444268 RSF1Q96T23 1441 aaPredicted RBP21.89■■□□□ 1.09
COL28A1-204ENST00000444268 SMARCA4P51532 1647 aa21.88■■□□□ 1.09
COL28A1-204ENST00000444268 EIF4G1Q04637 1599 aaKnown RBP21.79■■□□□ 1.08
COL28A1-204ENST00000444268 WIZO95785 1651 aa21.76■■□□□ 1.07
COL28A1-204ENST00000444268 ATAD2BQ9ULI0 1458 aa21.59■■□□□ 1.05
COL28A1-204ENST00000444268 PEG3Q9GZU2 1588 aa21.58■■□□□ 1.05
COL28A1-204ENST00000444268 CHIC1Q5VXU3 224 aa21.58■■□□□ 1.04
COL28A1-204ENST00000444268 CC2D2AQ9P2K1 1620 aa21.57■■□□□ 1.04
COL28A1-204ENST00000444268 SMARCA2P51531 1590 aa21.53■■□□□ 1.04
COL28A1-204ENST00000444268 TOP2AP11388 1531 aaKnown RBP21.46■■□□□ 1.03
COL28A1-204ENST00000444268 BAZ1BQ9UIG0 1483 aaKnown RBP21.45■■□□□ 1.02
COL28A1-204ENST00000444268 NCAPD3P42695 1498 aa21.43■■□□□ 1.02
COL28A1-204ENST00000444268 DNAJC5BQ9UF47 199 aa21.38■■□□□ 1.01
COL28A1-204ENST00000444268 HMGXB3Q12766 1538 aa21.37■■□□□ 1.01
COL28A1-204ENST00000444268 CCDC88BA6NC98 1476 aa21.27■□□□□ 0.99
COL28A1-204ENST00000444268 TRIM41Q8WV44 630 aa20.92■□□□□ 0.94
COL28A1-204ENST00000444268 CFTRP13569 1480 aa20.88■□□□□ 0.93
COL28A1-204ENST00000444268 NESP48681 1621 aa20.88■□□□□ 0.93
COL28A1-204ENST00000444268 CADPSQ9ULU8 1353 aa20.87■□□□□ 0.93
COL28A1-204ENST00000444268 ABCC8Q09428 1581 aa20.76■□□□□ 0.91
COL28A1-204ENST00000444268 PRDM2Q13029 1718 aa20.75■□□□□ 0.91
COL28A1-204ENST00000444268 LAMC3Q9Y6N6 1575 aa20.75■□□□□ 0.91
COL28A1-204ENST00000444268 LOC105371045A0A1W2PR82 267 aa20.72■□□□□ 0.91
COL28A1-204ENST00000444268 FANCD2Q9BXW9 1451 aa20.66■□□□□ 0.9
COL28A1-204ENST00000444268 WRNQ14191 1432 aaPredicted RBP eCLIP20.6■□□□□ 0.89
COL28A1-204ENST00000444268 KIF21AQ7Z4S6 1674 aa20.6■□□□□ 0.89
COL28A1-204ENST00000444268 PDS5BQ9NTI5 1447 aa20.59■□□□□ 0.89
COL28A1-204ENST00000444268 SYNJ1O43426 1573 aa20.57■□□□□ 0.88
COL28A1-204ENST00000444268 CEP164Q9UPV0 1460 aa20.55■□□□□ 0.88
COL28A1-204ENST00000444268 CUX1P39880 1505 aa20.53■□□□□ 0.88
COL28A1-204ENST00000444268 FAM9AQ8IZU1 332 aaPredicted RBP20.49■□□□□ 0.87
COL28A1-204ENST00000444268 TOP2BQ02880 1626 aa20.47■□□□□ 0.87
COL28A1-204ENST00000444268 BIVM-ERCC5R4GMW8 1640 aa20.45■□□□□ 0.86
COL28A1-204ENST00000444268 ERCC6Q03468 1493 aa20.45■□□□□ 0.86
COL28A1-204ENST00000444268 URB2Q14146 1524 aaKnown RBP20.45■□□□□ 0.86
COL28A1-204ENST00000444268 EEA1Q15075 1411 aa20.43■□□□□ 0.86
COL28A1-204ENST00000444268 PCGF6Q9BYE7 350 aa20.41■□□□□ 0.86
COL28A1-204ENST00000444268 TOPBP1Q92547 1522 aa20.41■□□□□ 0.86
COL28A1-204ENST00000444268 DNMBPQ6XZF7 1577 aa20.4■□□□□ 0.86
COL28A1-204ENST00000444268 MRC2Q9UBG0 1479 aa20.38■□□□□ 0.85
COL28A1-204ENST00000444268 TRIM26Q12899 539 aaPredicted RBP20.34■□□□□ 0.85
COL28A1-204ENST00000444268 FGD5Q6ZNL6 1462 aa20.34■□□□□ 0.85
COL28A1-204ENST00000444268 THOC2Q8NI27 1593 aaKnown RBP20.33■□□□□ 0.84
COL28A1-204ENST00000444268 HRCP23327 699 aa20.31■□□□□ 0.84
COL28A1-204ENST00000444268 POLA1P09884 1462 aaPredicted RBP20.29■□□□□ 0.84
COL28A1-204ENST00000444268 SOGA1O94964 1423 aa20.29■□□□□ 0.84
COL28A1-204ENST00000444268 WDR62O43379 1518 aa20.29■□□□□ 0.84
COL28A1-204ENST00000444268 RUSC2Q8N2Y8 1516 aa20.26■□□□□ 0.83
COL28A1-204ENST00000444268 RAD54L2Q9Y4B4 1467 aa20.25■□□□□ 0.83
COL28A1-204ENST00000444268 CUX2O14529 1486 aa20.18■□□□□ 0.82
COL28A1-204ENST00000444268 CSRNP3Q8WYN3 585 aa20.16■□□□□ 0.82
COL28A1-204ENST00000444268 TNIKQ9UKE5 1360 aa20.14■□□□□ 0.81
COL28A1-204ENST00000444268 TARBP1Q13395 1621 aaKnown RBP20.13■□□□□ 0.81
COL28A1-204ENST00000444268 EHMT2Q96KQ7 1210 aa20.13■□□□□ 0.81
COL28A1-204ENST00000444268 GOLGA3Q08378 1498 aa20.12■□□□□ 0.81
COL28A1-204ENST00000444268 WDR97A6NE52 1622 aa20.12■□□□□ 0.81
COL28A1-204ENST00000444268 ABCA10Q8WWZ4 1543 aa20.12■□□□□ 0.81
COL28A1-204ENST00000444268 KIF21BO75037 1637 aa20.1■□□□□ 0.81
COL28A1-204ENST00000444268 KIF27Q86VH2 1401 aa20.08■□□□□ 0.8
COL28A1-204ENST00000444268 TDRD9Q8NDG6 1382 aaKnown RBP20.08■□□□□ 0.8
COL28A1-204ENST00000444268 CEP162Q5TB80 1403 aa20.07■□□□□ 0.8
COL28A1-204ENST00000444268 IFT140Q96RY7 1462 aa20.06■□□□□ 0.8
COL28A1-204ENST00000444268 ZNF608Q9ULD9 1512 aaPredicted RBP20.04■□□□□ 0.8
COL28A1-204ENST00000444268 ABCA5Q8WWZ7 1642 aa20.01■□□□□ 0.79
COL28A1-204ENST00000444268 AQRO60306 1485 aaKnown RBP eCLIP20■□□□□ 0.79
COL28A1-204ENST00000444268 IGF1RP08069 1367 aa19.97■□□□□ 0.79
COL28A1-204ENST00000444268 GAPVD1Q14C86 1478 aa19.97■□□□□ 0.79
COL28A1-204ENST00000444268 UBTFP17480 764 aaKnown RBP19.95■□□□□ 0.78
COL28A1-204ENST00000444268 EIF4G3O43432 1585 aaKnown RBP19.94■□□□□ 0.78
COL28A1-204ENST00000444268 PBRM1Q86U86 1689 aa19.9■□□□□ 0.78
COL28A1-204ENST00000444268 ZEB1P37275 1124 aaPredicted RBP19.9■□□□□ 0.78
COL28A1-204ENST00000444268 PRXQ9BXM0 1461 aa19.89■□□□□ 0.77
COL28A1-204ENST00000444268 ERICH3Q5RHP9 1530 aa19.88■□□□□ 0.77
COL28A1-204ENST00000444268 RAPGEF2Q9Y4G8 1499 aa19.88■□□□□ 0.77
COL28A1-204ENST00000444268 GRIN2BQ13224 1484 aa19.85■□□□□ 0.77
COL28A1-204ENST00000444268 CARMIL1Q5VZK9 1371 aa19.85■□□□□ 0.77
COL28A1-204ENST00000444268 CUL7Q14999 1698 aa19.81■□□□□ 0.76
COL28A1-204ENST00000444268 SNAPC4Q5SXM2 1469 aa19.8■□□□□ 0.76
COL28A1-204ENST00000444268 CLIP1P30622 1438 aa19.79■□□□□ 0.76
COL28A1-204ENST00000444268 ADAMTS12P58397 1594 aa19.77■□□□□ 0.76
COL28A1-204ENST00000444268 FHAD1B1AJZ9 1412 aa19.73■□□□□ 0.75
COL28A1-204ENST00000444268 VPS8Q8N3P4 1428 aa19.71■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms