RNA–Protein interactions for RNA: ENST00000441657.1

SP140-206, Transcript of SP140 nuclear body protein, humanhuman

TSL 3

Gene SP140, Length 387 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SP140-206ENST00000441657 AEBP2Q6ZN18 517 aaPredicted RBP17.35■□□□□ 0.37
SP140-206ENST00000441657 CHIC1Q5VXU3 224 aa16.31■□□□□ 0.2
SP140-206ENST00000441657 NISCHQ9Y2I1 1504 aa16.04■□□□□ 0.16
SP140-206ENST00000441657 ABCC9O60706 1549 aa15.7■□□□□ 0.1
SP140-206ENST00000441657 DNAJC5BQ9UF47 199 aa15.59■□□□□ 0.09
SP140-206ENST00000441657 DNAJC5Q9H3Z4 198 aa15.04■□□□□ -0
SP140-206ENST00000441657 CCDC180Q9P1Z9 1646 aa14.77□□□□□ -0.05
SP140-206ENST00000441657 SENP3Q9H4L4 574 aaPredicted RBP14.71□□□□□ -0.05
SP140-206ENST00000441657 PHF23Q9BUL5 403 aaPredicted RBP14.55□□□□□ -0.08
SP140-206ENST00000441657 RB1CC1Q8TDY2 1594 aa14.54□□□□□ -0.08
SP140-206ENST00000441657 PABPN1Q86U42 306 aaKnown RBP eCLIP14.5□□□□□ -0.09
SP140-206ENST00000441657 CECR2Q9BXF3 1484 aa14.26□□□□□ -0.13
SP140-206ENST00000441657 NACADO15069 1562 aa14.22□□□□□ -0.13
SP140-206ENST00000441657 UNC13AQ9UPW8 1703 aa14.15□□□□□ -0.14
SP140-206ENST00000441657 CC2D2AQ9P2K1 1620 aa14.13□□□□□ -0.15
SP140-206ENST00000441657 BICRAQ9NZM4 1560 aa14.12□□□□□ -0.15
SP140-206ENST00000441657 DCAF8L2P0C7V8 631 aa14□□□□□ -0.17
SP140-206ENST00000441657 TRIM41Q8WV44 630 aa13.98□□□□□ -0.17
SP140-206ENST00000441657 CUX2O14529 1486 aa13.93□□□□□ -0.18
SP140-206ENST00000441657 SHROOM4Q9ULL8 1493 aa13.87□□□□□ -0.19
SP140-206ENST00000441657 EIF4G1Q04637 1599 aaKnown RBP13.86□□□□□ -0.19
SP140-206ENST00000441657 FOXD1Q16676 465 aa13.8□□□□□ -0.2
SP140-206ENST00000441657 MYO15BQ96JP2 1530 aa13.72□□□□□ -0.21
SP140-206ENST00000441657 ERCC6Q03468 1493 aa13.64□□□□□ -0.23
SP140-206ENST00000441657 SCRIBQ14160 1630 aa13.43□□□□□ -0.26
SP140-206ENST00000441657 THOC2Q8NI27 1593 aaKnown RBP13.24□□□□□ -0.29
SP140-206ENST00000441657 NESP48681 1621 aa13.21□□□□□ -0.3
SP140-206ENST00000441657 OSCARQ8IYS5 282 aa13.2□□□□□ -0.3
SP140-206ENST00000441657 DCAF1Q9Y4B6 1507 aa13.18□□□□□ -0.3
SP140-206ENST00000441657 NCAPD3P42695 1498 aa13.16□□□□□ -0.3
SP140-206ENST00000441657 TRHP20396 242 aaPredicted RBP13.1□□□□□ -0.31
SP140-206ENST00000441657 BAZ1AQ9NRL2 1556 aaPredicted RBP13.09□□□□□ -0.31
SP140-206ENST00000441657 SMARCA2P51531 1590 aa13.07□□□□□ -0.32
SP140-206ENST00000441657 ZCCHC6Q5VYS8 1495 aaKnown RBP13.06□□□□□ -0.32
SP140-206ENST00000441657 RIMBP3CA6NJZ7 1639 aa13.04□□□□□ -0.32
SP140-206ENST00000441657 RIMBP3BA6NNM3 1639 aa13.04□□□□□ -0.32
SP140-206ENST00000441657 RIMBP3Q9UFD9 1639 aa13.04□□□□□ -0.32
SP140-206ENST00000441657 ILDR1Q86SU0 546 aaPredicted RBP13.02□□□□□ -0.33
SP140-206ENST00000441657 KIF21AQ7Z4S6 1674 aa12.98□□□□□ -0.33
SP140-206ENST00000441657 LAMC3Q9Y6N6 1575 aa12.98□□□□□ -0.33
SP140-206ENST00000441657 PDS5BQ9NTI5 1447 aa12.97□□□□□ -0.33
SP140-206ENST00000441657 ATAD2BQ9ULI0 1458 aa12.97□□□□□ -0.33
SP140-206ENST00000441657 PLPPR3Q6T4P5 718 aa12.95□□□□□ -0.34
SP140-206ENST00000441657 CYB5RLQ6IPT4 315 aa12.94□□□□□ -0.34
SP140-206ENST00000441657 HMGXB3Q12766 1538 aa12.93□□□□□ -0.34
SP140-206ENST00000441657 ARHGEF11O15085 1522 aa12.92□□□□□ -0.34
SP140-206ENST00000441657 MRC2Q9UBG0 1479 aa12.89□□□□□ -0.35
SP140-206ENST00000441657 WDR62O43379 1518 aa12.87□□□□□ -0.35
SP140-206ENST00000441657 MSH5O43196 834 aa12.86□□□□□ -0.35
SP140-206ENST00000441657 PPP6R1Q9UPN7 881 aa12.85□□□□□ -0.35
SP140-206ENST00000441657 PIAS4Q8N2W9 510 aaPredicted RBP12.83□□□□□ -0.36
SP140-206ENST00000441657 POTEDQ86YR6 584 aa12.81□□□□□ -0.36
SP140-206ENST00000441657 BAZ1BQ9UIG0 1483 aaKnown RBP12.78□□□□□ -0.36
SP140-206ENST00000441657 ADRA2BP18089 450 aa12.78□□□□□ -0.36
SP140-206ENST00000441657 ARAP1Q96P48 1450 aa12.72□□□□□ -0.37
SP140-206ENST00000441657 CADPSQ9ULU8 1353 aa12.71□□□□□ -0.37
SP140-206ENST00000441657 SMARCA4P51532 1647 aa12.68□□□□□ -0.38
SP140-206ENST00000441657 CEP164Q9UPV0 1460 aa12.65□□□□□ -0.38
SP140-206ENST00000441657 PEG3Q9GZU2 1588 aa12.58□□□□□ -0.4
SP140-206ENST00000441657 RSF1Q96T23 1441 aaPredicted RBP12.57□□□□□ -0.4
SP140-206ENST00000441657 FANCD2Q9BXW9 1451 aa12.55□□□□□ -0.4
SP140-206ENST00000441657 ZNF608Q9ULD9 1512 aaPredicted RBP12.5□□□□□ -0.41
SP140-206ENST00000441657 URB2Q14146 1524 aaKnown RBP12.49□□□□□ -0.41
SP140-206ENST00000441657 KDM4FA0A1W2PPD8 638 aa12.44□□□□□ -0.42
SP140-206ENST00000441657 IFT140Q96RY7 1462 aa12.44□□□□□ -0.42
SP140-206ENST00000441657 FBLN2P98095 1184 aa12.43□□□□□ -0.42
SP140-206ENST00000441657 CHD1O14646 1710 aa12.42□□□□□ -0.42
SP140-206ENST00000441657 FBXO41Q8TF61 875 aa12.37□□□□□ -0.43
SP140-206ENST00000441657 CFTRP13569 1480 aa12.36□□□□□ -0.43
SP140-206ENST00000441657 EIF4G3O43432 1585 aaKnown RBP12.35□□□□□ -0.43
SP140-206ENST00000441657 MROH2BQ7Z745 1585 aa12.33□□□□□ -0.44
SP140-206ENST00000441657 ERCC6L2Q5T890 1561 aa12.3□□□□□ -0.44
SP140-206ENST00000441657 LMTK3Q96Q04 1460 aa12.3□□□□□ -0.44
SP140-206ENST00000441657 AQRO60306 1485 aaKnown RBP eCLIP12.28□□□□□ -0.44
SP140-206ENST00000441657 CLASP1Q7Z460 1538 aa12.28□□□□□ -0.44
SP140-206ENST00000441657 SOCS7O14512 581 aa12.27□□□□□ -0.45
SP140-206ENST00000441657 GAPVD1Q14C86 1478 aa12.27□□□□□ -0.45
SP140-206ENST00000441657 SYNJ1O43426 1573 aa12.21□□□□□ -0.46
SP140-206ENST00000441657 HECW2Q9P2P5 1572 aa12.2□□□□□ -0.46
SP140-206ENST00000441657 TOPBP1Q92547 1522 aa12.2□□□□□ -0.46
SP140-206ENST00000441657 KIF13AQ9H1H9 1805 aa12.19□□□□□ -0.46
SP140-206ENST00000441657 CHMP7Q8WUX9 453 aaPredicted RBP12.19□□□□□ -0.46
SP140-206ENST00000441657 ABCC8Q09428 1581 aa12.15□□□□□ -0.46
SP140-206ENST00000441657 TARBP1Q13395 1621 aaKnown RBP12.15□□□□□ -0.47
SP140-206ENST00000441657 ILDR2Q71H61 639 aa12.14□□□□□ -0.47
SP140-206ENST00000441657 WIZO95785 1651 aa12.12□□□□□ -0.47
SP140-206ENST00000441657 FAM69CQ0P6D2 419 aa12.11□□□□□ -0.47
SP140-206ENST00000441657 SNAPC4Q5SXM2 1469 aa12.1□□□□□ -0.47
SP140-206ENST00000441657 PRDM2Q13029 1718 aa12.1□□□□□ -0.47
SP140-206ENST00000441657 KDM6BO15054 1643 aa12.1□□□□□ -0.47
SP140-206ENST00000441657 SYNJ2O15056 1496 aa12.09□□□□□ -0.47
SP140-206ENST00000441657 ADGRL1O94910 1474 aa12.08□□□□□ -0.48
SP140-206ENST00000441657 TDRD9Q8NDG6 1382 aaKnown RBP12.06□□□□□ -0.48
SP140-206ENST00000441657 DNMBPQ6XZF7 1577 aa12.06□□□□□ -0.48
SP140-206ENST00000441657 MAGI1Q96QZ7 1491 aaPredicted RBP12.06□□□□□ -0.48
SP140-206ENST00000441657 DISP3Q9P2K9 1392 aa12.05□□□□□ -0.48
SP140-206ENST00000441657 ABCC10Q5T3U5 1492 aa12.04□□□□□ -0.48
SP140-206ENST00000441657 POLA1P09884 1462 aaPredicted RBP12.02□□□□□ -0.49
SP140-206ENST00000441657 RAD54L2Q9Y4B4 1467 aa11.99□□□□□ -0.49
SP140-206ENST00000441657 SOGA1O94964 1423 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms